KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:34:23 2014 Check: 00 ..
Name: bmy_16837T0/1-148 Len: 253 Check: 3858 Weight: 1.00
Name: ENSP00000465075/1-197 Len: 253 Check: 3018 Weight: 1.00
Name: ENSBTAP00000008128/1-197 Len: 253 Check: 1386 Weight: 1.00
Name: BACU002481/1-246 Len: 253 Check: 6560 Weight: 1.00
Name: ENSTTRP00000009017/1-197 Len: 253 Check: 3682 Weight: 1.00
//
1 50
bmy_16837T0/1-148 MGALR--PPS APGL-----S WGARVEGRRL LPALQRSSLR ----------
ENSP00000465075/1-197 MAAFRDIEEV SQGLLSLLGA NRAEAQQRRL LGRHEQVVER LLETQDGAEK
ENSBTAP00000008128/1-197 MAAFRDMEEV SQGLLSLLGA NRAEAQQRRL LGRHEQMVER LLETQDGAEK
BACU002481/1-246 MAAFRDMEEV SQGLLSLLGA NRAEAQQRRL LRRHEQVVER LLETQD----
ENSTTRP00000009017/1-197 MAAFRDMEEV SQGLLSLLGA NRAEAQQRRL LRRHEQVVER LLETQDGAEQ
51 100
bmy_16837T0/1-148 --------RR RWPRASSTRR SRHTRAALSC SSLKPSFRGP ARKTP-----
ENSP00000465075/1-197 QLREILTMEK EVAQSLLNAK EQVHQGGVEL QQLEAGLQEA GEEDTRLKAS
ENSBTAP00000008128/1-197 WLREILTAEK EVAQRLLDAK EQAHQGGVEV RQLEAELQRA SEEDAHLKAN
BACU002481/1-246 ---EVLTAEK EVAQSLLNAK AEAHQGGVEL QQLEAELQRA SEEDARLKTS
ENSTTRP00000009017/1-197 RLREVLTAEK EVAQSLLNAK EQAHQGGAEL QQLEAELQRA SEEDARLKAS
101 150
bmy_16837T0/1-148 ---------- ---------- ---------- ---------- ----------
ENSP00000465075/1-197 LLQ------- ---------- ---------- ---------- ----------
ENSBTAP00000008128/1-197 LLQ------- ---------- ---------- ---------- ----------
BACU002481/1-246 LLYPFLCVQN SRAPASPRRP LFTLENTPGA NSPGPNGVGV STWAALPSKP
ENSTTRP00000009017/1-197 LLY------- ---------- ---------- ---------- ----------
151 200
bmy_16837T0/1-148 ---------L SRELEELKEI EADLERQERE VDEDTTVTIP SAVYVAQLYR
ENSP00000465075/1-197 ---------L TRELEELKEI EADLERQEKE VDEDTTVTIP SAVYVAQLYH
ENSBTAP00000008128/1-197 ---------L TRELEELKEI EADLERQEKE VDEDTTVTIP SAVYVAQLYR
BACU002481/1-246 GVLNCLFTQL SRELEELKEI EADLERQERE VDEDTTVTIP SAVYVAQLYR
ENSTTRP00000009017/1-197 ---------L SREREELKEI ETDHERQERE VEEDTTVTIP SAVYVAQLYR
201 250
bmy_16837T0/1-148 RI-------- --------IH HGPSVAQPIH LESTQLSKKF ISDYLWSLVD
ENSP00000465075/1-197 QVSKIEWDYE CEPGMVKGIH HGPSVAQPIH LDSTQLSRKF ISDYLWSLVD
ENSBTAP00000008128/1-197 RISKIEWDYE CEPGMIKGIH HGPSVAQPIH LDSTQLSKKF ISDYLWNLVD
BACU002481/1-246 RISKIEWDYE CEPGMIKGIH HGPSVAQPIH LESTQLSKKF ISDYLWSLVD
ENSTTRP00000009017/1-197 RISKIEWDYE CEPGMIKGIH HGPSVAQPIH LDSTQLSKKF ISDYLWSLVD
251 300
bmy_16837T0/1-148 TEW
ENSP00000465075/1-197 TEW
ENSBTAP00000008128/1-197 TEW
BACU002481/1-246 TEW
ENSTTRP00000009017/1-197 TEW