KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:28 2014 Check: 00 .. Name: ENSTTRP00000012692/1-1080 Len: 1214 Check: 6810 Weight: 1.00 Name: ENSP00000378187/1-1080 Len: 1214 Check: 8225 Weight: 1.00 Name: ENSBTAP00000008153/1-1096 Len: 1214 Check: 2007 Weight: 1.00 Name: bmy_04253T0/1-1140 Len: 1214 Check: 5727 Weight: 1.00 Name: BACU001877/1-1080 Len: 1214 Check: 1124 Weight: 1.00 // 1 50 ENSTTRP00000012692/1-1080 ---------- ---------M PAKGRYFLNE GEAGPNHDTL YEKYRLTSQH ENSP00000378187/1-1080 ---------- ---------M PAKGRYFLNE GEEGPDQDAL YEKYQLTSQH ENSBTAP00000008153/1-1096 MLPRPWGFLR GPLGVPRWRM PAKGRYFLNE GEEGPDQDAL YEKYRLTSQH bmy_04253T0/1-1140 ---------- ---------M PAKGRYFLNE GEEDPNHDAL YEKYRLTSQH BACU001877/1-1080 ---------- ---------M PAKGRYFLNE GEEDPSHDTL YEKYRLTSQH 51 100 ENSTTRP00000012692/1-1080 GPLLLTLLLV AITACAVLII IAFSYGDPSR HQAVLGTAFF TLAVFVALYA ENSP00000378187/1-1080 GPLLLTLLLV AATACVALII IAFSQGDPSR HQAILGMAFL VLAVFAALSV ENSBTAP00000008153/1-1096 GPLLLMLLLV AIAACTTLIV ITFSYGDPSR HRAVLGTAFF TLAMFVLLYA bmy_04253T0/1-1140 GPLLLTLLL- ---------- ------DPSR HQAVLGTAFF TLAVFVALYA BACU001877/1-1080 GPLLLTLLLV AITACAVLIV IAFSYGDPSR HQAVLGTAFF TLAVFVALYA 101 150 ENSTTRP00000012692/1-1080 LVYVECLVRR WLRASALLIW ACLVTLGYVL V--FDSWMKE ACDWEQVPFF ENSP00000378187/1-1080 LMYVECLLRR WLRALALLTW ACLVALGYVL V--FDAWTKA ACAWEQVPFF ENSBTAP00000008153/1-1096 LVYVECLDRR GLRISALLIW ACLVTLGYVL VFDFDSPRKD TCVLGQVPFF bmy_04253T0/1-1140 LVYVECLVRR WLRASALLIW ACLVTLGYVL V--LDSWMKE ACDWEQVPFF BACU001877/1-1080 LVYVECLVRR WLRASALLVW ACLVTLGYVL V--FDSWMKE ACDWEQVPFF 151 200 ENSTTRP00000012692/1-1080 LFVVFVVYTL LPFSTRGAVV AGVVSSTSHL LVLGALMGAF TTPSVRVGLQ ENSP00000378187/1-1080 LFIVFVVYTL LPFSMRGAVA VGAVSTASHL LVLGSLMGGF TTPSVRVGLQ ENSBTAP00000008153/1-1096 LFVVFVVYTL LPFSMWGAVT AGLVSSISHL LVLAMHQEDF TSP---VGLK bmy_04253T0/1-1140 LFVVFVVYTL LPFSTRGAIV AGVVSSTSHL LVLGALMGAF TTPSVRVGLQ BACU001877/1-1080 LFVVFVVYTL LPFSTRGAVV AGVVSSTSHL LVLGALMGAF TTPSIRVGLQ 201 250 ENSTTRP00000012692/1-1080 ---------- ---------- ---------- ---------- LLANAVVFLC ENSP00000378187/1-1080 ---------- ---------- ---------- ---------- LLANAVIFLC ENSBTAP00000008153/1-1096 ---------- ---------- ---------- ---------- LLATAVVFVC bmy_04253T0/1-1140 SAGALPCSLF FAGLGYPRGS APPLSPDPRA SFLGPAHCGW LLANAVVFLC BACU001877/1-1080 ---------- ---------- ---------- ---------- LLANAVVFLC 251 300 ENSTTRP00000012692/1-1080 GNLTGAFHKH QMQDASRDLF TYTVKCIQIR RKLRIEKRQQ XXXXXXXXXX ENSP00000378187/1-1080 GNLTGAFHKH QMQDASRDLF TYTVKCIQIR RKLRIEKRQQ ENLLLSVLPA ENSBTAP00000008153/1-1096 GNLTGAFHKH HMQDASHDLF TYTVKCIQIR RKLRIEKRQQ ENLLLSVLPA bmy_04253T0/1-1140 GNLTGAFHKH QMQDASRDLF TYTVKCIQIR RKLRIEKRQQ ENLLLSVLPA BACU001877/1-1080 GNLTGAFHKH QMQDASRDLF TYTVKCIQIR RKLRIEKRQQ ENLLLSVLPA 301 350 ENSTTRP00000012692/1-1080 XXXXXXXXXX XXXXXXXXXX XXXXDNNFHS LYVKRHQNVS ILYADIVGFT ENSP00000378187/1-1080 HISMGMKLAI IERLKEHGDR RCMPDNNFHS LYVKRHQNVS ILYADIVGFT ENSBTAP00000008153/1-1096 HISMGMKLAI IERLKERGDR RYLPDNNFHN LYVKRHQNVS ILYADIVGFT bmy_04253T0/1-1140 HISMGMKLAI IERLKERGDR RYLPDNNFHS LYVKRHQNVS ILYADIVGFT BACU001877/1-1080 HISMGMKLAI IERLKERGDR RYLPDNNFHS LYVKRHQNVS ILYADIVGFT 351 400 ENSTTRP00000012692/1-1080 QLASDCSPKE LVVVLNELFG KFDQIAKANE CMRIKILGDC YYCVSGLPVS ENSP00000378187/1-1080 QLASDCSPKE LVVVLNELFG KFDQIAKANE CMRIKILGDC YYCVSGLPVS ENSBTAP00000008153/1-1096 RLASDCSPKE LVVVLNELFG KFDQIAKANE CMRIKILGDC YYCVSGLPVS bmy_04253T0/1-1140 QLASDCSPKE LVVVLNELFG KFDQIAKANE CMRIKILGDC YYCVSGLPVS BACU001877/1-1080 QLASDCSPKE LVVVLNELFG KFDQIAKANE CMRIKILGDC YYCVSGLPVS 401 450 ENSTTRP00000012692/1-1080 LPSHARNCVK MGLDMCEAIK QVREATGVDI SMRVGIHSGN VLCGVIGLRK ENSP00000378187/1-1080 LPTHARNCVK MGLDMCQAIK QVREATGVDI NMRVGIHSGN VLCGVIGLRK ENSBTAP00000008153/1-1096 LPNHARNCVK MGLDMCEAIK QVREATGVDI SMRVGIHSGN VLCGVIGLRK bmy_04253T0/1-1140 LPSHARNCVK MGLDMCEAIK QVREATGVDI SMRVGIHSGN VLCGVIGLRK BACU001877/1-1080 LPSHARNCVK MGLDMCEAIK QVREATGVDI SMRVGIHSGN VLCGVIGLRK 451 500 ENSTTRP00000012692/1-1080 WQYDVWSHDV SLANRMEAAG VPGRVHITEA TLNHLDKAYE VEDGHGQQRD ENSP00000378187/1-1080 WQYDVWSHDV SLANRMEAAG VPGRVHITEA TLKHLDKAYE VEDGHGQQRD ENSBTAP00000008153/1-1096 WQYDVWSHDV SLANRMEAAG VPGRVHITEA TLKHLDKAYE VEDGHGQQRD bmy_04253T0/1-1140 WQYDVWSHDV SLANRMEAAG VPGRVHITEA TLNHLDKAYE VEDGHGQQRD BACU001877/1-1080 WQYDVWSHDV SLANRMEAAG VPGRVHITEA TLNHLDKAYE VEDGHGQQRD 501 550 ENSTTRP00000012692/1-1080 PYLKEMNIRT YLVIDPRSQQ PPPPSLHLTK SKGDATLKMR ASVRMTRYLE ENSP00000378187/1-1080 PYLKEMNIRT YLVIDPRSQQ PPPPSQHLPR PKGDAALKMR ASVRMTRYLE ENSBTAP00000008153/1-1096 PYLKEMNIRT YLVIDPRSQQ PPQPSQHNSK NKGDATLKMR ASVRMTRYLE bmy_04253T0/1-1140 PYLKEMNIRT YLVIDPRSQQ PPPPSLHLTK SKGDATLKMR ASVRMTRYLE BACU001877/1-1080 PYLKEMNIRT YLVIDPRSQQ PPPPSLHLTK SKGDATLKMR ASVRMTRYLE 551 600 ENSTTRP00000012692/1-1080 SWGAARPFAH LNQRENVSSN ETPVPHGRRP KAIPLRRHRT PDRSASPKGR ENSP00000378187/1-1080 SWGAARPFAH LNHRESVSSG ETHVPNGRRP KSVPQRHRRT PDRSMSPKGR ENSBTAP00000008153/1-1096 SWGAARPFAH LNQRESVSSS ETLVSHGRRP KAVPLRRHRT PDRSASPKGR bmy_04253T0/1-1140 SWGAARPFAH LNQRESVSSN ETPVPHGRRP KAIPLRRHRT PDRSASPKGR BACU001877/1-1080 SWGAARPFAH LNQRESVSSN ETPVPHGRRP KAIPLRRHRT PDRSASPKGR 601 650 ENSTTRP00000012692/1-1080 SEDDSYDDEM LSAIEGLSST RPCCSKSDDF YTFGSIFLEK GFERE----- ENSP00000378187/1-1080 SEDDSYDDEM LSAIEGLSST RPCCSKSDDF YTFGSIFLEK GFERE----- ENSBTAP00000008153/1-1096 SEDDSYDDEM LSAIEGLSST RPCCSKSDDF STFGSIFLEK GFERE----- bmy_04253T0/1-1140 SEDDSYDDEM LSAIEGLSST RPCCSKSDDF STFGSIFLEK GFEREVRTSE BACU001877/1-1080 SEDDSYDDEM LSAIEGLSST RPCCSKSDDF STFGSIFLEK GFERE----- 651 700 ENSTTRP00000012692/1-1080 ---------- ---------- ---------- ---------- ---------- ENSP00000378187/1-1080 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008153/1-1096 ---------- ---------- ---------- ---------- ---------- bmy_04253T0/1-1140 QPQEQELQGL GWGAGAGHRA ANTPRRSAQG GRWGVAPAAT GVGKGLNAAC BACU001877/1-1080 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000012692/1-1080 ---------- -----YRLAP IPRARYYFAC ASLVFICILL VHALLMPRMA ENSP00000378187/1-1080 ---------- -----YRLAP IPRARHDFAC ASLIFVCILL VHVLLMPRTA ENSBTAP00000008153/1-1096 ---------- -----YRLAP IPRVRYYFAC ASLVFVFILL IHVLLLYSMK bmy_04253T0/1-1140 LGSLLTGLAP APDTPYRLAP IPRARYYFAC ASLVFICILL VHALLMPRMA BACU001877/1-1080 ---------- -----YRLAP IPRARYYFAC ASLVFICILL VHALLMPRMA 751 800 ENSTTRP00000012692/1-1080 ALGVSFGLVA CVLGLVLCLS SAPQVSXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000378187/1-1080 ALGVSFGLVA CVLGLVLGLC FATKFSRCCP ARGTLCTISE RVETQPLLRL ENSBTAP00000008153/1-1096 TLGVSFGLVA CVLGLVLGLC FADVFLRCCP ALGKLRAIAE SVETQPLLRV bmy_04253T0/1-1140 ALGVSFGLVA CVLGLVLGLC FARELLRCCP ARGALRAISE RVETQPLLRV BACU001877/1-1080 ALGVSFGLVA CVLGLVLGLC FARELLRCCP ARGALRAISE RVETQPLLRA 801 850 ENSTTRP00000012692/1-1080 XXXXXXXXXX XXXXXXXXPL MPFPAPGLPA GNETGPGAVS SWERTLCKLL ENSP00000378187/1-1080 TLAVLTIGSL LTVAIINLPL MPFQVPELPV GNETGLLAAS SKTRALCEPL ENSBTAP00000008153/1-1096 SLAILTIGSL LVIAVVNLPL MPFRDRGLTA GNETGLRAVS GWEMSPCYLL bmy_04253T0/1-1140 SLAVLTIGSL LTVAVINL-- ---------- ---------- ---------- BACU001877/1-1080 SLAVLTIGSL LTVAVINLPL MPFPAPGLPA GNETGPGAMS GWERTLCKPL 851 900 ENSTTRP00000012692/1-1080 PYYTCSCILA FIACSVFLRM SLELKVVLLT VALVAYLVLF NISPCWQWDC ENSP00000378187/1-1080 PYYTCSCVLG FIACSVFLRM SLEPKVVLLT VALVAYLVLF NLSPCWQWDC ENSBTAP00000008153/1-1096 PYYTCSCILA FIACSVFLRM SLELKVVLLT VALVAYLVLF NVYPSWQWDC bmy_04253T0/1-1140 -YYTCSCILA FIACSVFLRM SLELKVMLLT VALVAYLVLF NISPCWQWDC BACU001877/1-1080 PYYTCSCILA FIACSVFLRM SLELKVVLLT VALVAYLVLF NVSPCWQWDC 901 950 ENSTTRP00000012692/1-1080 CGYSLGNLTK TNGTLSSSPS CSW-DLKTMI NFYLVLFYTT LIMLSRQIDY ENSP00000378187/1-1080 CGQGLGNLTK PNGTTSGTPS CSWKDLKTMT NFYLVLFYIT LLTLSRQIDY ENSBTAP00000008153/1-1096 CGHSLGNLTG TNGTLS-SSS CSW-HLKTMT NFYLVLFYTT LIMLSRQIDY bmy_04253T0/1-1140 CGHSLGNLTK TNGTLS-SPS CSW-DLKTMI NFYLVLFYTT LIMLSRQIDY BACU001877/1-1080 CGHSLGNLTK ANGTLS-SPS CSW-DLKTMI NFYLVLFYTT LIMLSRQIDY 951 1000 ENSTTRP00000012692/1-1080 YCRLDCLWKK KFKKEHEEFE TMENVNRLLL ENVLPAHVAA HFIGDKLNE- ENSP00000378187/1-1080 YCRLDCLWKK KFKKEHEEFE TMENVNRLLL ENVLPAHVAA HFIGDKLNE- ENSBTAP00000008153/1-1096 YCRLDCLWKK KFKKEHEEFE TMENVNRLLL ENVLPAHVAA HFIGDKLNE- bmy_04253T0/1-1140 YCRLDCLWKK KFKKEHEEFE TMENVNRLLL ENVLPAHVAA HFIGDKLNEV BACU001877/1-1080 YCRLDCLWKK KFKKEHEEFE TMENVNRLLL ENVLPAHVAA HFIGDKLNEV 1001 1050 ENSTTRP00000012692/1-1080 -DWYHQSYDC VCVMFASVPD FKVFYTECDV NKEGLECLRL LNEIIADFDE ENSP00000378187/1-1080 -DWYHQSYDC VCVMFASVPD FKVFYTECDV NKEGLECLRL LNEIIADFDE ENSBTAP00000008153/1-1096 -DWYHQSYDC VCVMFASVPD FKVFYTECDV NKEGLECLRL LNEIIADFDE bmy_04253T0/1-1140 WDWYHQSYDC VCVMFASVPD FKVFYTECDV NKEGLECLRL LNEIIADFDE BACU001877/1-1080 WDWYHQSYDC VCVMFASVPD FKVFYTECDV NKEGLECLRL LNEIIADFDE 1051 1100 ENSTTRP00000012692/1-1080 LLLKPKFSGV EKIKTIGSTY MAAAGLSIPS GHENQDLERQ HAHIGIMVEF ENSP00000378187/1-1080 LLLKPKFSGV EKIKTIGSTY MAAAGLSVAS GHENQELERQ HAHIGVMVEF ENSBTAP00000008153/1-1096 LLLKPKFSGV EKIKTIGSTY MAAAGLSVPS GPENQDLERQ HAHIGIMVEF bmy_04253T0/1-1140 LLLKPKFSGV EKIKTIGSTY MAAAGLSIPS GHENQDLERQ HAHIGIMVEF BACU001877/1-1080 LLLKPKFSGV EKIKTIGSTY MAAAGLSIPS GHENQDLERQ HAHIGIMVEF 1101 1150 ENSTTRP00000012692/1-1080 STALMSKLDG INRHSFNSFR LRVGINHGPV IAGVIGARKP QYDIWGNTVN ENSP00000378187/1-1080 SIALMSKLDG INRHSFNSFR LRVGINHGPV IAGVIGARKP QYDIWGNTVN ENSBTAP00000008153/1-1096 STALMSKLDG INRHSFNSFR LRVGINHGPV IAGVIGARKP QYDIWGNTVN bmy_04253T0/1-1140 STALMSKLDG INRHSFNSFR LRVGINHGPV IAGVIGARKP QYDIWGNTVN BACU001877/1-1080 STALMSKLDG INRHSFNSFR LRVGINHGPV IAGVIGARKP QYDIWGNTVN 1151 1200 ENSTTRP00000012692/1-1080 VASRMESTGE LGKIQVTEET CTILQGLGYS CECRGLINVK GKGELRTYFV ENSP00000378187/1-1080 VASRMESTGE LGKIQVTEET CTILQGLGYS CECRGLINVK GKGELRTYFV ENSBTAP00000008153/1-1096 VASRMESTGE LGKIQVTEET CTILQGLGYS CECRGLIDVK GKGELRTYFV bmy_04253T0/1-1140 VASRMESTGE LGKIQVTEET CTILQGLGYS CECRGLINVK GKGELRTYFV BACU001877/1-1080 VASRMESTGE LGKIQVTEET CTILQGLGYS CECRGLINVK GKGELRTYFV 1201 1250 ENSTTRP00000012692/1-1080 CTDTAKFQGL GLNG ENSP00000378187/1-1080 CTDTAKFQGL GLN- ENSBTAP00000008153/1-1096 CTDTAKFQGL GLN- bmy_04253T0/1-1140 CTDTAKFQGL GLN- BACU001877/1-1080 CTDTAKFQGL GLN-