KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:29 2014 Check: 00 .. Name: ENSP00000373572/1-318 Len: 335 Check: 9357 Weight: 1.00 Name: ENSBTAP00000008160/1-312 Len: 335 Check: 3655 Weight: 1.00 Name: ENSTTRP00000014542/1-260 Len: 335 Check: 439 Weight: 1.00 Name: bmy_01369T0/1-329 Len: 335 Check: 2573 Weight: 1.00 Name: BACU020319/1-245 Len: 335 Check: 1848 Weight: 1.00 // 1 50 ENSP00000373572/1-318 ---------- ------MATY CDDLGPSSAP PGQAQATAHP PGYEPGDLGA ENSBTAP00000008160/1-312 ---------- ------MAEY GDGSGPSAAP QSQARAAARP SGYARGDLGA ENSTTRP00000014542/1-260 ---------- ---------- ---------- ---------- ---------- bmy_01369T0/1-329 MSFGSEPPAQ ARERLAMAAY RDGSGPCAAP HGQARAAAHP AGYARGDLGA BACU020319/1-245 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000373572/1-318 V-GGGPLLWV NAPALSPKSY ASGPGPAPPY AAPSYGAPGP LLGAPGGLAG ENSBTAP00000008160/1-312 A-GAGPRLWL NAPALSSAPY APGPVPAAP- ----FGAPGP LLAAPGGLAG ENSTTRP00000014542/1-260 ---------- -------ETY AQEPAPESP- ----YGATGP LLRNPGGLTG bmy_01369T0/1-329 AGGGGPRLWL NAPALSSAPY APGPAPASP- ----YGTPGP LLGAPGGLAG BACU020319/1-245 ---------- ---------- ---------- ---------P LLGAPGGLAG 101 150 ENSP00000373572/1-318 ADLAWLSLSG QQELLRLVRP PYSYSALIAM AIQSAPLRKL TLSQIYQYVA ENSBTAP00000008160/1-312 ADLAWLSLPG QQELLRLVRP PYSYSALIAM AIQSAPRRKL TLSQIYQYVA ENSTTRP00000014542/1-260 ADLAWLSLSG QQELLMMLQP PY-YSTIITM TIQSAPLCRM TISQIYQYVA bmy_01369T0/1-329 ADLAWLSLSG QQELLRLVRP PYSYSALIAM AIQSAPLRRL TLSQIYQYVA BACU020319/1-245 ADLAWLSLSG QQELLRLVRP PYSYSALIAM AIESAPLRRL TLSQIYQYVA 151 200 ENSP00000373572/1-318 GNFPFYKRSK AGWQNSIRHN LSLNDCFKKV PRDEDDPGKG NYWTLDPNCE ENSBTAP00000008160/1-312 GNFPFYKRSK AGWQNSIRHN LSLNDCFKKV PRDEDDPGKG NYWTLDPNCE ENSTTRP00000014542/1-260 GNFPFYQRSK AGWQNSIRHN LSLNDCFKKV PRDEDDPGKG NYWTLDPNCE bmy_01369T0/1-329 GNFPFYKRSK AGWQNSIRHN LSLNDCFKKV PRDEDDPGKG NYWTLDPNCE BACU020319/1-245 GNFPFYQRSK AGWQNSIRHN LSLNDCFQKV PRDEDDPGKG NYWTLDPNCE 201 250 ENSP00000373572/1-318 KMFDNGNFRR KRKRRAEASA AVRSGARSVG GAEAPALEPP SAACLDLQAS ENSBTAP00000008160/1-312 KMFDNGNFRR KRKRRGEAGA VAPSGPRSQA GARAPELEPL GAASPDLRAS ENSTTRP00000014542/1-260 KMFDNGNFRR KRKRKGEASA AASSGAGSPG GAEAPELEPL GAASPDLRLS bmy_01369T0/1-329 KMFDNGNFRR KRKRRGEASA AAPSGARSPG GAKAPELEPL XAASPDLRLS BACU020319/1-245 KMFDNGNFRR KRKRRGEASA AAPSGARSPG GAKAPELEPL GAASPDLRLS 251 300 ENSP00000373572/1-318 PSPSAPEAAT CFSGFASAMS ALAGGLGTFP GGLAGDFSFG RRPPTVATHA ENSBTAP00000008160/1-312 ASPPAPEAAA CFSSLASAVG ALAGGFNPLP GGLAGDFSFG -RPATIATHS ENSTTRP00000014542/1-260 SSPPAPEAAA CFSSFASAMG ALAGGLGTFP GGLAGDFSFG -RP-TVAAHG bmy_01369T0/1-329 SSPPAPEAAS CFSSFASAMG ALAGGLATFP GGLAGDFSFG -RSTTVAAHG BACU020319/1-245 SSPPAPEAAA CFSSFASAMG ALAGGLGTFP GGLAGDFSFG -RSTTVAAHG 301 350 ENSP00000373572/1-318 PQTLNPSPGF APGHQTAAAG FRLSHLLYSR EGTEV ENSBTAP00000008160/1-312 PQVPRPAPGF AAGQQTAATG FRVSHFVYTR EGTEV ENSTTRP00000014542/1-260 TQAPGPALGF ASGHQTAATG FRVGHFVYSR EGTEV bmy_01369T0/1-329 TQAPGPALGF AAGHQTAATG FRVGHFVYSR EGTEV BACU020319/1-245 TQDPGPVLGF AAGHQTAATG FRVGHFVYSR EGTEV