KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:30 2014 Check: 00 .. Name: bmy_00385T0/1-802 Len: 1085 Check: 2150 Weight: 1.00 Name: ENSTTRP00000008371/1-927 Len: 1085 Check: 3545 Weight: 1.00 Name: BACU012007/1-883 Len: 1085 Check: 6190 Weight: 1.00 Name: ENSP00000397566/1-976 Len: 1085 Check: 9727 Weight: 1.00 Name: ENSBTAP00000008161/1-960 Len: 1085 Check: 5559 Weight: 1.00 // 1 50 bmy_00385T0/1-802 MAHGHLRLLL SSIQATMALL GKRCDVSTNG CGPDRWNSAI ARKDEIITSL ENSTTRP00000008371/1-927 ---------- ------MALL GKRCDVPTNG CGPDRWNSAI ARKDEIITSL BACU012007/1-883 ---------- ------MALL GKRCDVPTNG CGPDRWNSAI ARKDEIITSL ENSP00000397566/1-976 ---------- ------MALL GKRCDVPTNG CGPDRWNSAF TRKDEIITSL ENSBTAP00000008161/1-960 ---------- ------MALL GKRCDIPANG CGPDRWTSAF TRKDEIITSL 51 100 bmy_00385T0/1-802 VSALDSMCSA LSKLNAEVAC VAVHDESAFV VGTEKGRMFL NARKELQSDF ENSTTRP00000008371/1-927 VSALDSMCSA LSKLNAEVAC VAVHDESAFV VGTDKGRMFL NARKELQSDF BACU012007/1-883 VSALDSMCSA LSKLNAEVAC VAVHDESAFV LGTEKGRMFL NARKELQSDF ENSP00000397566/1-976 VSALDSMCSA LSKLNAEVAC VAVHDESAFV VGTEKGRMFL NARKELQSDF ENSBTAP00000008161/1-960 VSALDSMCSA LSKLNAEVAC VAVHDESAFV VGTEKGRMFL NARKELQSDF 101 150 bmy_00385T0/1-802 LRFC------ ---------- ---------- ------RGPP WKEPEAEHPK ENSTTRP00000008371/1-927 LRFC------ ---------- ---------- ------RGPP WKEPEAEHPK BACU012007/1-883 LRFC------ ---------- ---------- ---------- ---------- ENSP00000397566/1-976 LRFCLSAAQH RAATSQLEGR VVRRVLTVAS RALCPTGGPP WKDPEAEHPK ENSBTAP00000008161/1-960 LRFC------ ---------- ---------- ------RGAP WKEPEAEHPK 151 200 bmy_00385T0/1-802 KVPRGEGGSR NIPRSALEHG SDVYLLRKMV EEVFDVLYSE ALGRASVVPL ENSTTRP00000008371/1-927 KVPRGEGGSR NIPRSALEHG SDVYLLRKMV EEVFDVLYSE ALGRASVVPL BACU012007/1-883 ---------- ---------- ---------- --------RE ALGRASVVPL ENSP00000397566/1-976 KVQRGEGGGR SLPRSSLEHG SDVYLLRKMV EEVFDVLYSE ALGRASVVPL ENSBTAP00000008161/1-960 KVPRGEGGGR NVPRSALEHG SDVYLLRKMV EEVFDVLYSE ALGRASVVPL 201 250 bmy_00385T0/1-802 PYERLLREPG LLAVQGLPEG LAFRRPAEYD PKALMAILEH SHRIRFKLKR ENSTTRP00000008371/1-927 PYERLLREPG LLAVQGLPEG LAFRRPAEYD PKALMAILEH SHRIRFKLKR BACU012007/1-883 PYERLLREPG LLAVQGLPEG LAFRRPAEYD PKALMAILEH SHRIRFKLKR ENSP00000397566/1-976 PYERLLREPG LLAVQGLPEG LAFRRPAEYD PKALMAILEH SHRIRFKLKR ENSBTAP00000008161/1-960 PYERLLREPG LLAVQGLPEG LAFRRPAEYD PKALMAILEH SHRIRFKLKR 251 300 bmy_00385T0/1-802 PLEDGGRDSK ALVELNGISL IAKGSRDCGL HGQAPKGPPQ DLPPTATSSS ENSTTRP00000008371/1-927 PLEDGGRDSK ALVELNGISL IAKGSRDCGL HGQAPKGPPQ DLPPTATSSS BACU012007/1-883 PLEDGGRESK ALVELNGISL IAKGSRDCGL HGQAPKGPPQ DLPPTATSSS ENSP00000397566/1-976 PLEDGGRDSK ALVELNGVSL IPKGSRDCGL HGQAPKVPPQ DLPPTATSSS ENSBTAP00000008161/1-960 PLEDGGRDSK ALVELNGVSL LAKGARDCGL HGQTPKGPPQ DLPPPATSSS 301 350 bmy_00385T0/1-802 VASFLYSTAL ANHTVRELKQ EAPACPLASS DLGLGRPGPE PKAPAAQDFP ENSTTRP00000008371/1-927 VASFLYSTAL ANRTARELKQ EAPACPLASS DLGLGRPGPE PKAPTAQDFP BACU012007/1-883 VASFLYSTAL ANHTVRELKQ EAPACPLASS DLGLGRPGPE PKAPAAQDFP ENSP00000397566/1-976 MASFLYSTAL PNHAIRELKQ EAPSCPLAPS DLGLSRPMPE PKATGAQDFS ENSBTAP00000008161/1-960 VASFLYSTAL PNHAVRELKQ EAPACPLGPS DLGLGRPGPE PKAPAAQDFP 351 400 bmy_00385T0/1-802 DCCGQKPTGP GGPLIQNVHA SKRILFSIVH DKSEKWDAFI KETEDINTLR ENSTTRP00000008371/1-927 DCCXXXXXXX XXXXXXNVHA SKRILFSIVH DKSEKWDAFI KETEDINTLR BACU012007/1-883 DCCGQKPTGP GGPLIQNVHA SKRILFSIVH DKSEKWDAFI KETEDINTLR ENSP00000397566/1-976 DCCGQKPTGP GGPLIQNVHA SKRILFSIVH DKSEKWDAFI KETEDINTLR ENSBTAP00000008161/1-960 DCCGQKPTGP GGPLIQNVHA SKRILFSIVH DKSEKWDAFI KETEDINTLR 401 450 bmy_00385T0/1-802 ECVQILFNSR YAEALGLDHM VPVPYRKIAC DPEAVEIVGI PDKIPFKRPC ENSTTRP00000008371/1-927 ECVQILFNSR YXXXXXXXXX XXXXXXXXXX XXXXXXXXGI PDKIPFKRPC BACU012007/1-883 ECVQILFNSR YAEALGLDHM VPVPYRKIAC DPEAVEIVGI PDKIPFKRPC ENSP00000397566/1-976 ECVQILFNSR YAEALGLDHM VPVPYRKIAC DPEAVEIVGI PDKIPFKRPC ENSBTAP00000008161/1-960 ECVQILFNSR YAEALGLDHM VPVPYRKIAC DPEAVEIVGI PDKIPFKRPC 451 500 bmy_00385T0/1-802 TYGVPKLKRI LEERHSIHFV IKRMFDERIF TGNKFTKDPT KLEPASPPED ENSTTRP00000008371/1-927 T-GVPKLKRI LEERHSIHFV IKRMFDERIF TGNKFTKDPT KLEPASPPED BACU012007/1-883 TYGVPKLKRI LEERHSIHFV IKRMFDERIF TGNKFTKDPT KLEPASPPED ENSP00000397566/1-976 TYGVPKLKRI LEERHSIHFI IKRMFDERIF TGNKFTKDTT KLEPASPPED ENSBTAP00000008161/1-960 TYGVPKLKRI LEERHSIHFV IKRMFDERIF TGNKFTKDPT KLEPASPPED 501 550 bmy_00385T0/1-802 ISAEVSRAAV LDLAGTARSD KSSLSEDCGP GTSGELGGLR PIKIEPEDLD ENSTTRP00000008371/1-927 ISAEVSRAAV LDLAGTARSD KSSLSEDCGP GTSGELGGLR PIKIEPEDLD BACU012007/1-883 ISAEVSRAAV LDLAGTARSD KSSLSEDCGP GTSGELGGLR PIKIEPEDLD ENSP00000397566/1-976 TSAEVSRATV LDLAGNARSD KGSMSEDCGP GTSGELGGLR PIKIEPEDLD ENSBTAP00000008161/1-960 ASTEVARAAI LDLAGTTRSD KSSLSEDCGP GTSGELGGLR PIKIEPEDPD 551 600 bmy_00385T0/1-802 IIQVTVPDPS PTSEEMTDSM PGHVPSEDSG YGMEMLTDKG PSEDPRPEER ENSTTRP00000008371/1-927 IIQVTVPDPS PTSEEMTDSM PGHVPSEDSG YGMEMLTDKG PSEDPRPEER BACU012007/1-883 IIQVTVPDPS PASEEMTDSM PGHVPSEDSG YGMEMLTDKG PSEDPRPEER ENSP00000397566/1-976 IIQVTVPDPS PTSEEMTDSM PGHLPSEDSG YGMEMLTDKG LSEDARPEER ENSBTAP00000008161/1-960 IIQVTVPDPS PASEEMTDSM PGHLPSEDSG YGMEMLTDKG AGEDPRPEER 601 650 bmy_00385T0/1-802 PVEDSHGDMI RPLRKQVELL FNTRYAKAIG ISEPVKVPYS KFLMYPEELF ENSTTRP00000008371/1-927 PVEDSHGDVI RPLRKQVELL FXXXXXKAIG ISEPVKVPYS KFLMYPEELF BACU012007/1-883 PVEDSHGDVI RPLRKQVELL FNTRYAKAIG ISEPVKVPYS KFLMYPEELF ENSP00000397566/1-976 PVEDSHGDVI RPLRKQVELL FNTRYAKAIG ISEPVKVPYS KFLMHPEELF ENSBTAP00000008161/1-960 PVEDSHGDVI RPLRKQVELL FNTRYAKAIG ISEPVKVPYS KFLMYPEELF 651 700 bmy_00385T0/1-802 VVGLPEGISL RRPNCFGIAK LRKILEASSS IQFVIKRPEL LTEGVKEPLT ENSTTRP00000008371/1-927 VVGLPEGISL RRPNCFGIAK LRKILEASNS IQFVIKRPEL LTEGVKEPLT BACU012007/1-883 VVGLPEGISL RRPNCFGIAK LRKILEASNS IQFVIKRPEL LTEGVKEPLT ENSP00000397566/1-976 VVGLPEGISL RRPNCFGIAK LRKILEASNS IQFVIKRPEL LTEGVKEPIM ENSBTAP00000008161/1-960 VVGLPEGISL RRPNCFGIAK LRKILEASNS IQFVIKRPEL LTEGVKEPLS 701 750 bmy_00385T0/1-802 DSQGTLRRVT GRGAGRAWEG SQASAITPPP ASSVLVPSTL ASPHCPPCWV ENSTTRP00000008371/1-927 DSQ------- ---------- ---------- ---------- ---------- BACU012007/1-883 DSQ------- ---------- ---------- ---------- ---------- ENSP00000397566/1-976 DSQ------- ---------- ---------- ---------- ---------- ENSBTAP00000008161/1-960 DSQ------- ---------- ---------- ---------- ---------- 751 800 bmy_00385T0/1-802 CPHQIPPLSR VPGAACSPWL LSPP--PPER DSGDPLVDES LKRQGFQENY ENSTTRP00000008371/1-927 ---------- --GAACSPGF SPP---PPER DSGDPLVDES LKRQGFQENY BACU012007/1-883 ---------- ---------- ---------- ---------- -------ENY ENSP00000397566/1-976 ---------- ---------- --------ER DSGDPLVDES LKRQGFQENY ENSBTAP00000008161/1-960 ---------- ---ATRSPWL LSPPPTPPER DSGDPLVDES LKRQGFQENY 801 850 bmy_00385T0/1-802 DARLSRIDIA NTLREQVQDL FNKKY----- ---------- ---------- ENSTTRP00000008371/1-927 DARLSRIDIA NTLREQVQDL FNKKYG-ALG IKYPVQVPYX XXXXXXXXXX BACU012007/1-883 DARLSRIDIA NTLREQVQDL FNKKYGEALG IKYPVQVPYK RIKSNPGSVI ENSP00000397566/1-976 DARLSRIDIA NTLREQVQDL FNKKYGEALG IKYPVQVPYK RIKSNPGSVI ENSBTAP00000008161/1-960 DARLSRIDIA NTLREQVQDL FNKKYGEALG IKYPVQVPYK RIKSNPGSVI 851 900 bmy_00385T0/1-802 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008371/1-927 XXXXXXXXXX XXXCTFGSQN LERILAVADK IKFTVTRPFQ GLIPKPDEDD BACU012007/1-883 IEGLPPGIPF RKPCTFGSQN LERILAVADK IKFTVTRPFQ GLIPKPDEDD ENSP00000397566/1-976 IEGLPPGIPF RKPCTFGSQN LERILAVADK IKFTVTRPFQ GLIPKPDEDD ENSBTAP00000008161/1-960 IEGLPPGIPF RKPCTFGSQN LERILAVADK IKFTVTRPFQ GLIPKPDEDD 901 950 bmy_00385T0/1-802 ---------- ---------D RY-------- ---------K KEPEAEA--- ENSTTRP00000008371/1-927 ANRLGEKVIL REQVKELFNE KYGEALGLNR PVLVPYKLIR DSPDAVEVTG BACU012007/1-883 ANRLGEKVIL REQVKELFNE KYGEALGLNR PVLVPYKLIR DSPDAVEVTG ENSP00000397566/1-976 ANRLGEKVIL REQVKELFNE KYGEALGLNR PVLVPYKLIR DSPDAVEVTG ENSBTAP00000008161/1-960 ANRLGEKVIL REQVKELFNE KYGEALGLNR PVLVPYKLIR DSPDAVEVTG 951 1000 bmy_00385T0/1-802 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008371/1-927 LPDDIPFRNP NTYDIHRLEK ILKAREHVRM VIINQLQPFA EICNDAKVPA BACU012007/1-883 LPDDIPFRNP NTYDIHRLEK ILKAREHVRM VIINQLQPFA EICNDAKVPA ENSP00000397566/1-976 LPDDIPFRNP NTYDIHRLEK ILKAREHVRM VIINQLQPFA EICNDAKVPA ENSBTAP00000008161/1-960 LPDDIPFRNP NTYDIHRLEK ILKAREHVRM VIINQLQPFA EICNDAKVPA 1001 1050 bmy_00385T0/1-802 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008371/1-927 KDSSIPKRKR KRVSEGNSI- ------SSSS SSNPESVAST NQISLV---- BACU012007/1-883 KDSSLPKRKR KRVSEGNSI- ------SSSS SSNPESVAST NQISLVVKLH ENSP00000397566/1-976 KDSSIPKRKR KRVSEGNSV- SSSSSSSSSS SSNPDSVASA NQISLV---- ENSBTAP00000008161/1-960 KDSSIPKRKR KRVSEGNSVS SSSSSSSSSS SSNPESLAST NQISLV---- 1051 1100 bmy_00385T0/1-802 ---------- ---------- ---------- ----- ENSTTRP00000008371/1-927 ---------- ---------- ---------- ----- BACU012007/1-883 RPGPDCSSLW -LSAGTRAGS STLERGSGVW GDAGR ENSP00000397566/1-976 --------QW PMYMVDYAGL NVQLPGPLNY ----- ENSBTAP00000008161/1-960 --------QW PMYMVDYAGL NVQLPGPLNY -----