KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:31 2014 Check: 00 .. Name: ENSP00000363031/1-643 Len: 676 Check: 7502 Weight: 1.00 Name: ENSBTAP00000008171/1-667 Len: 676 Check: 5843 Weight: 1.00 Name: ENSTTRP00000007099/1-637 Len: 676 Check: 9742 Weight: 1.00 Name: bmy_18071T0/1-639 Len: 676 Check: 3174 Weight: 1.00 Name: BACU003253/1-640 Len: 676 Check: 380 Weight: 1.00 // 1 50 ENSP00000363031/1-643 MEPVPLQDFV RALDPASLPR VLRVCSGVYF EGSIYEISGN ECCLSTGDLI ENSBTAP00000008171/1-667 MEPVSLQDFV CALDPASLPR VLRVCSGVYF QGSIYEISGN ECCLSTGDLI ENSTTRP00000007099/1-637 MEPVSLQDFV CALDPASLPR VLRVCSGVYF QGSIYEISGN ECSLSTGDLI bmy_18071T0/1-639 MEPVSLQDFV CALDPACLPR VLRVCSGVYF QGSIYEISGN ECSLSTGDLI BACU003253/1-640 MEPVSLQDFV CALDPASLPR VLRVCSGVYF QGSVYEISGN ECSLSTGDLI 51 100 ENSP00000363031/1-643 KVTQVRLQKV VCENPKTSQT MELAPNFQGY FTPLNTPQSY ETLEELVSAT ENSBTAP00000008171/1-667 KVTHVRLQKV VCENPGTGQT TELAPNFQGL FSPLTGPQSY GTLEELVCAA ENSTTRP00000007099/1-637 KVTCVRLQ-V VCENPGXXXX XXXXXXXXXN FSPLTGPQSY GTLEELVSAA bmy_18071T0/1-639 KVTCVRLQKV VCENPGTGQT MELAPNFQGN FSPLTGPQSY GTLEELVSAA BACU003253/1-640 KVTCVRLQKV VCENPGTGQT MELAPNFQGN FSPLTGPRSY ATLEELVSAA 101 150 ENSP00000363031/1-643 TQSSKQLPTC FMSTHRIVTE GRVVTEDQLL MLEAVVMHLG IRSARCVLGM ENSBTAP00000008171/1-667 TQSSKSLPIR FMSTHRIATK ARVVPQEQPL KLEAVEMHQG ACCARCVLDS ENSTTRP00000007099/1-637 TQSSKQLPIC FMSTHRITTK ARVVPQEQPL KLEAVEMHLG TCCARCVLGT bmy_18071T0/1-639 TQSSKQLPIC FMSTHRITTK ARVVPQEQPL KLEAVEMHLG TCXARCVLGT BACU003253/1-640 TQSSKQLPIC FMSTHRITTK ARVVPQEQPL KLEAVEMHLG TCCACCVLGT 151 200 ENSP00000363031/1-643 EGQQVILHLP LSQKGPFWTW EPSAPRTLLQ VLQDPALKDL VLTCPTLPWH ENSBTAP00000008171/1-667 GAQQGFLHLP LSQQGPFWKL EPGPPRTLLQ VLQDPTVRDT LLTCSAFPWR ENSTTRP00000007099/1-637 GAQQVILHLP LSQKGPFWEL EPGPPRTLLQ VLQDPALRDT ILTCPALPWH bmy_18071T0/1-639 GAQQVLLHLP LSQKGPFWEL QPGPPRTLLQ VLQDPALRDT ILTCPALPWR BACU003253/1-640 GAQQVLLHLP LSQKGPFWEL QPGPPRTLLQ VLQDPALKDT ILTCPTLPWR 201 250 ENSP00000363031/1-643 SLILRPQYEI QAIMHMRRTI VKIPSTLEVD VEDVTASSRH VHFIKPLLLS ENSBTAP00000008171/1-667 SLTLKPQYEV EAIMHFRRTV VKIPSTLEVD VEDVTTSSQH IHFIQPLLLS ENSTTRP00000007099/1-637 SLTLMPQYEV EAIMHLRRTI VKIPSTLEVD VEDITASSQH IHFIQPLLLS bmy_18071T0/1-639 SLTLMPQYEV EAIMHLRRTI VKIPSTLEVD VEDITASSQH IHFMQPLLLS BACU003253/1-640 SLTLMPQYEV EAIMHLRRTI VKIPSTLEVD VEDITASSQH IHFMQPLLLS 251 300 ENSP00000363031/1-643 EVLAWEGPFP LSMEILEVPE GRPIFLSPWV GSLQKGQRLC VYGLASPPWR ENSBTAP00000008171/1-667 EALARGGPFP LATEILEVPQ GSPNFLSPWL SSLQKGQRLC LHGVASPPWR ENSTTRP00000007099/1-637 EALARGGPFP LPTEILEVPE GPPIFLSPWL SSLRKGQRLC IYGVASPPWR bmy_18071T0/1-639 EALARGGPFP LPTEILEVPE GPPIFLSPWL SSLQKGQRLC IYGLASPPWR BACU003253/1-640 EALARGGPFP LPTEILEVPE GPPIFLSPWL SSLQKGQRLC IYGLASPPWR 301 350 ENSP00000363031/1-643 VLASSKGRKV PRHFLVSGGY QGKLRRRPRE FPTAYDLLGA FQPGRPLRVV ENSBTAP00000008171/1-667 FLASTRGRKV PRHFMISGAY RGKLRRRPRE FPTAYDLLGA LQPGQPLRVV ENSTTRP00000007099/1-637 VLASTKGRKV PRHFMISGAY QGKLRRRPRE FPTAYDLLGA LQPGQPLRVV bmy_18071T0/1-639 FLASTKGRKV PRHFMISGAY QGKLRRRPRE FPTAYDLLGA LQPGQPLRVV BACU003253/1-640 FLASTKGRKV PRHFMISGAY QGKLRRRPRE FPTAYDLLGA LQPGQPLRVV 351 400 ENSP00000363031/1-643 ATKDCEGERE ENPEFTSLAV GDRLEVLGPG QAHGAQGSDV DVLVCQRLSD ENSBTAP00000008171/1-667 ATKDCEGDEL ENLGFASLAV GDRLEVRGSG QALGQHERDI DVLVCQRLGE ENSTTRP00000007099/1-637 ATKDCEGDGL ENPGFMSLAM GDRLEVLGSG QALGVQERDM NVLVCQRLSD bmy_18071T0/1-639 ATKDCEGDEL ENPGFMSLAM GDRLEVLGSG QALGVQERDM DVLVCQRLSD BACU003253/1-640 ATKDCEGDGF ENPGFMSLAM GDRLEVLGSG QALGVQERDM DVLVCQRLSD 401 450 ENSP00000363031/1-643 QAGEDEEEEC KEEAESPERV LLPFHFPGSF VEEMSDSRRY SLADLTAQFS ENSBTAP00000008171/1-667 PTGEEEAGED -EEVEDQEQI LLPLYFSGGF VEELSDARRY SLQDLTAQFS ENSTTRP00000007099/1-637 QPGEE---EC -EEAEDQEQI LLPLHFSGGF VEELGDGRRY SLQDLIAQFP bmy_18071T0/1-639 QPGDEE--EY -EEAEDQEQI LLPLHLSGGF VEELGDGRRY SLQDLIAQFS BACU003253/1-640 QPGEGE--EY -EEAEDQEQI LLPLHLSGGF VEELGDGRRY SLQDLIAQFS 451 500 ENSP00000363031/1-643 LPCEVKVVAK DTSHPTDPLT SFLGLRLEEK ITEPFLVVSL DSEPGMCFEI ENSBTAP00000008171/1-667 LPCEVKVVAK DPRHPADPLP SFPGLQLEEK ILEPFLVVSL DSDPEMCFEI ENSTTRP00000007099/1-637 LPCEVKVVAK DASHPDDPLP SFLGLRLEEK IMEPFLVVSL DSNPEMCFEV bmy_18071T0/1-639 LPCEVKVVTK DASHPADPLP SFLGLRLEEK IMEPFLVVSL DSNPEMCFEV BACU003253/1-640 LPCEVKVVAK DASHPADPLP SFLGLRLEEK IMEPFLVVSL DSNPEMCFEV 501 550 ENSP00000363031/1-643 PPRWLDLTVV KAKGQPDLPE GSLPIATVEE LTDTFYYRLR KLPACEIQAP ENSBTAP00000008171/1-667 PPRWLDLTVV EVKELPGQPS GALPMATVEE LTEAFYYRLR KLPAVESQAP ENSTTRP00000007099/1-637 PPRWLDLTVV EAEGQPSQPA GPLPVVPVEE LTEAFYYHLR KSPAFEGQAP bmy_18071T0/1-639 PPRWLDLTVV EAEGQPSQPA GPLPVVPVEE LTEAFYYHLR KSPAFEGQAP BACU003253/1-640 PPRWLDLTVV EAEGQPSQPA GPLPVVPVEE LTEAFYYHLR KSPAFEGQAP 551 600 ENSP00000363031/1-643 PPRPPKNQGL SKQRRH-SSE GGVKSSQVLG LQQHARLPKP KAKTLPEFIK ENSBTAP00000008171/1-667 PPRPPKSKGL SEQKKQMSKE KGIKSSEVSE LQEPPLLPKL RTKSLLKVTQ ENSTTRP00000007099/1-637 PPRPPKSKGL SGQRAV-SKA KGVKSSEAFE LQEPPLMPKP KRKTLRKVIK bmy_18071T0/1-639 PPRPPKSKGL SGQKQQVSKA KGVKSSEAFQ LQKPSLLPKP KRKTLPKVTK BACU003253/1-640 PPRPPKSKGL SGQKKQVSKA KGVKSSEAFQ LQKSSLLPKP KRKTFPKVTK 601 650 ENSP00000363031/1-643 DGSSTYSKIP AHRKGHRPAK PQRQDLD--- ---------- ---------- ENSBTAP00000008171/1-667 DSSNLYSEVP GRKKGCRPAV PITEDSGKMT SSNYPPQRTQ EGWQSVQTQP ENSTTRP00000007099/1-637 DSCNLYSAIP GHKKGLRPTK PITQDTD--- ---------- ---------- bmy_18071T0/1-639 DSCNLYSKIP GHKKGLRPTK PITQDTG--- ---------- ---------- BACU003253/1-640 DSCNLYSEIP GHKKGLRLTK PITQDTG--- ---------- ---------- 651 700 ENSP00000363031/1-643 ---------D DEHDYEEILE QFQKTI ENSBTAP00000008171/1-667 ILTDLDSFAD DEHDYEEI-- ------ ENSTTRP00000007099/1-637 ---------- DEHNYEEILE QFPKTL bmy_18071T0/1-639 ---------- NNQEWTYLQM NILVD- BACU003253/1-640 ---------- DEHDYEEILE QFPKTL