KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:35 2014 Check: 00 .. Name: ENSTTRP00000014009/1-1038 Len: 1083 Check: 4854 Weight: 1.00 Name: ENSP00000318641/1-1042 Len: 1083 Check: 2569 Weight: 1.00 Name: bmy_09684T0/1-1017 Len: 1083 Check: 4649 Weight: 1.00 Name: BACU007489/1-981 Len: 1083 Check: 9226 Weight: 1.00 Name: ENSBTAP00000008186/1-1040 Len: 1083 Check: 3666 Weight: 1.00 // 1 50 ENSTTRP00000014009/1-1038 MELQKGKG-- AAAAAAAASG AAGGGGGAGA GAPGGGRLLL ATSLDAKDEL ENSP00000318641/1-1042 MELQKGKGAA AAAAASGAAG --GGGGGAGA GAPGGGRLLL STSLDAKDEL bmy_09684T0/1-1017 MELQKGKGAA AAAAAAAASG AAGGGGGAGA GAPGGGRLLL STSLDAKDEL BACU007489/1-981 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008186/1-1040 MELQKGKG-- --AAAAAASG AAGGGGGAGA GAPGGGRLLL STSLDAKDEL 51 100 ENSTTRP00000014009/1-1038 EERLERCMSI VTSMTTGVSE REANDALNAY VCKGPPQHEE ICLGLFTLVL ENSP00000318641/1-1042 EERLERCMSI VTSMTAGVSE REANDALNAY VCKGLPQHEE ICLGLFTLIL bmy_09684T0/1-1017 EE-------- ---------- ---------- VCKGPPQHEE ICLGLFTLVL BACU007489/1-981 ---------- ---MTTGVSE REANDALNAY VCKGPPQHEE ICLGLFTLVL ENSBTAP00000008186/1-1040 EERLERCMSI VTSMTTGVSE REANDALNAY VCKGPPQHEE ICLGLFTLVL 101 150 ENSTTRP00000014009/1-1038 TEPAQAQKCY RDLALVSRDG MNIVLNKINQ ILMEKYLKLQ DTCRTQLVWL ENSP00000318641/1-1042 TEPAQAQKCY RDLALVSRDG MNIVLNKINQ ILMEKYLKLQ DTCRTQLVWL bmy_09684T0/1-1017 TEPAQAQKCY RDLALVSRDG MNIVLNKINQ ILMEKYLKLQ DTCRTQLVWL BACU007489/1-981 TEPAQAQKCY RDLALVSRDG MNIVLNKINQ ILMEKYLKLQ DTCRTQLVWL ENSBTAP00000008186/1-1040 TEPAQAQKCY RDLALVSRDG MNIVLNKINQ ILMEKYLKLQ DTCRTQLVWL 151 200 ENSTTRP00000014009/1-1038 VRELVKSGVL GADGVCMTFM KQIAGGDVTA KNIWLAESVL DILMEQREWV ENSP00000318641/1-1042 VRELVKSGVL GADGVCMTFM KQIAGGDVTA KNIWLAESVL DILTEQREWV bmy_09684T0/1-1017 VRELVKSGVL GADGVCMTFM KQIAGGDVTA KNIWLAESVL DILMEQREWV BACU007489/1-981 VRELVKSGVL GADGVCMTFM KQIAGGDVTA KNIWLAESVL DILMEQREWV ENSBTAP00000008186/1-1040 VRELVKSGVL GADGVCMTFM KQIAGGDVTA KNIWLAESVL DILMEQREWV 201 250 ENSTTRP00000014009/1-1038 LKSSILIAMA VYTYLRLIVD HHGTAQLQAL RQKEVDFCIS LLRERFMECL ENSP00000318641/1-1042 LKSSILIAMA VYTYLRLIVD HHGTAQLQAL RQKEVDFCIS LLRERFMECL bmy_09684T0/1-1017 LKSSILIAMA VYTYLRLIVD HHGTAQLQAL RQKEVDFCIS LLRERFMECL BACU007489/1-981 LKSSILIAMA VYTYLRLIVD HHGTAQLQAL RQKEVDFCIS LLRERFMECL ENSBTAP00000008186/1-1040 LKSSILIAMA VYTYLRLIVD HHGTAQLQAL RQKEVDFCIS LLRERFMECL 251 300 ENSTTRP00000014009/1-1038 MIGRDLVRLL QNVARIPEFE LLWKDIIHNP QALSPQFTGI LQLLQSRTSR ENSP00000318641/1-1042 MIGRDLVRLL QNVARIPEFE LLWKDIIHNP QALSPQFTGI LQLLQSRTSR bmy_09684T0/1-1017 MIGRDLVRLL QNVARIPEFE LLWKDIIHNP QALSPQFTGI LQLLQSRTSR BACU007489/1-981 MIGRDLVRLL QNVARIPEFE LLWKDIIHNP QALSPQFTGI LQLLQSRTSR ENSBTAP00000008186/1-1040 MVGRDLVRLL QNVARIPEFE LLWKDIIHNP QALSPQFTGI LQLLQSRTSR 301 350 ENSTTRP00000014009/1-1038 KFLACRLTPD METKLLFMTS RVRFGQQKRY QDWFQRQYLS TPDSQSLRCD ENSP00000318641/1-1042 KFLACRLTPD METKLLFMTS RVRFGQQKRY QDWFQRQYLS TPDSQSLRCD bmy_09684T0/1-1017 KFLACRLTPD METKLLFMTS RVRFGQQKRY QDWFQRQYLS TPDSQSLRCD BACU007489/1-981 KFLACRLTPD METKLLFMTS RVRFGQQKRY QDWFQRQYLS TPDSQSLRCD ENSBTAP00000008186/1-1040 KFLACRLTPD METKLLFMTS RVRFGQQKRY QDWFQRQYLS TPDSQSLRCD 351 400 ENSTTRP00000014009/1-1038 LIRYICGVVH PSNEVLSSDI LPRWAIIGWL LTTCTSNVAA SNAKLALFYD ENSP00000318641/1-1042 LIRYICGVVH PSNEVLSSDI LPRWAIIGWL LTTCTSNVAA SNAKLALFYD bmy_09684T0/1-1017 LIRYICGVVH PSNEVLSSDI LPRWAIIGWL LTTCTSNVAA SNAKLALFYD BACU007489/1-981 LIRYICGVVH PSNEVLSSDI LPRWAIIGWL LTTCTSNVAA SNAKLALFYD ENSBTAP00000008186/1-1040 LIRYICGVVH PSNEVLSSDI LPRWAIIGWL LTTCTSNVAA SNAKLALFYD 401 450 ENSTTRP00000014009/1-1038 WLFFSPDKDS IMNIEPAILV MHHSMKPHPA ITATLLDFMC RIIPNFYPPL ENSP00000318641/1-1042 WLFFSPDKDS IMNIEPAILV MHHSMKPHPA ITATLLDFMC RIIPNFYPPL bmy_09684T0/1-1017 WLFFSPDKDS IMNIEPAILV MHHSMKPHPA ITATLLDFMC RIIPNFYPPL BACU007489/1-981 WLFFSPDKDS IMNIEPAILV MHHSMKPHPA ITATLLDFMC RIIPNFYPPL ENSBTAP00000008186/1-1040 WLFFSPDKDS IMNIEPAILV MHHSMKPHPA ITATLLDFMC RIIPNFYPPL 451 500 ENSTTRP00000014009/1-1038 EGHVRQ-VFS SLNHIVE-RV LTHLAPLFDN PKLDKELRAM LREKFPEFCS ENSP00000318641/1-1042 EGHVRQGVFS SLNHIVEKRV LAHLAPLFDN PKLDKELRAM LREKFPEFCS bmy_09684T0/1-1017 EGHVRQGVFS SLNHIVEKRV LAHLAPLFDN PKLDKELRAM LREKFPEFCS BACU007489/1-981 EGHVRQGVFS SLNHIVEKRV LAHLAPLFDN PKLDKELRAM LREKFPEFCS ENSBTAP00000008186/1-1040 EGHVRQGVFS SLNHIVEKRV LAHLAPLFDN PKLDKELRAM LREKFPEFCS 501 550 ENSTTRP00000014009/1-1038 SPSPPVEVKI EEPVSMEMDN HMSDKDESCY DNAEAAFSDD EEDLNSKGKK ENSP00000318641/1-1042 SPSPPVEVKI EEPVSMEMDN HMSDKDESCY DNAEAAFSDD EEDLNSKGKK bmy_09684T0/1-1017 SPSPPVEVKI EEPVSMEMDN HMSDKDESCY DNAEAAFSDD EEDLNSKGKK BACU007489/1-981 SPSPPVEVKI EEPVSMEMDN HMSDKDESCY DNAEAAFSDD EEDLNSKGKK ENSBTAP00000008186/1-1040 SPSPPVEVKI EEPVSMEMDN HMSDKDESCY DNAEAAFSDD EEDLNSKGKK 551 600 ENSTTRP00000014009/1-1038 RE-RFHPIKE TVVEEPVDIT PYLDQLDESL RD-VLQLXXX XDTEAQCEVM ENSP00000318641/1-1042 REFRFHPIKE TVVEEPVDIT PYLDQLDESL RDKVLQLQKG SDTEAQCEVM bmy_09684T0/1-1017 REFRFHPIKE TVVEEPVDIT PYLDQLDESL RDKVLQLQKG SDTEAQCEVM BACU007489/1-981 REFRFHPIKE TVVEEPVDIT PYLDQLDESL RDKVLQLQKG SDTEAQCEVM ENSBTAP00000008186/1-1040 REFRFHPIKE TVVEEPVDIT PYLDQLDESL RDKVLQLQKG SDTEAQCEVM 601 650 ENSTTRP00000014009/1-1038 QEIVDQVLEE DFDSEQLSVL ASCLQELFKG HFRGEVLPEE ITEESLEESV ENSP00000318641/1-1042 QEIVDQVLEE DFDSEQLSVL ASCLQELFKA HFRGEVLPEE ITEESLEESV bmy_09684T0/1-1017 QEIVDQVLEE DFDSEQLSVL ASCLQELFKG HFRGEVLPEE ITEESLEESV BACU007489/1-981 QEIVDQVLEE DFDSEQLSVL ASCLQELFKG HFRGEVLPEE ITEESLEESV ENSBTAP00000008186/1-1040 QEIVDQVLEE DFDSEQLSVL ASCLQELFKG HFRGEVLPEE ITEESLEESV 651 700 ENSTTRP00000014009/1-1038 GKPLYLIFXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXK ENSP00000318641/1-1042 GKPLYLIFRN LCQMQEDNSS FSLLLDLLSE LYQKQPKIGY HLLYYLRASK bmy_09684T0/1-1017 GKPLYLIFRN LCQMQEDNSS FSLLLDLLSE LYQKQPKIGY HLLYYLRASK BACU007489/1-981 GKPLYLIFRN LCQMQEDNSS FSLLLDLLSE LYQKQPKIGY HLLYYLRASK ENSBTAP00000008186/1-1040 GKPLYLIFRN LCQMQEDNSS FSLLLDLLSE LYQKQPKIGY HLLYYLRASK 701 750 ENSTTRP00000014009/1-1038 AAAGKMNLYE SFAQATQLGD LHTCLMMDMK ACQEDDVRLL CHLTPSIYTE ENSP00000318641/1-1042 AAAGKMNLYE SFAQATQLGD LHTCLMMDMK ACQEDDVRLL CHLTPSIYTE bmy_09684T0/1-1017 AAAGKMNLYE SFAQATQLGD LHTCLMMDMK ACQEDDVRLL CHLTPSIYTE BACU007489/1-981 AAAGKMNLYE SFAQATQLGD LHTCLMMDMK ACQEDDVRLL CHLTPSIYTE ENSBTAP00000008186/1-1040 AAAGKMNLYE SFAQATQLGD LHTCLMMDMK ACQEDDVRLL CHLTPSIYTE 751 800 ENSTTRP00000014009/1-1038 FPDETLRSGE LLNMIVAVID SAQLQELVCH VMMGNLVMFR KDSVLNILIQ ENSP00000318641/1-1042 FPDETLRSGE LLNMIVAVID SAQLQELVCH VMMGNLVMFR KDSVLNILIQ bmy_09684T0/1-1017 FPDETLRSGE LLNMIVAVID SAQLQELVCH VMMGNLVMFR KDSVLNIL-- BACU007489/1-981 FPDETLRSGE LLNMIVAVID SAQLQELVCH VMMGNLVMFR KDSVLNILIQ ENSBTAP00000008186/1-1040 FPDETLRSGE LLNMIVAVID SAQLQELVCH VMMGNLVMFR KDSVLNILIQ 801 850 ENSTTRP00000014009/1-1038 SLDWETFEQY CAWQLFLAHN IPLETIIPIL QHLKYKEHPE ALSCLLLQLR ENSP00000318641/1-1042 SLDWETFEQY CAWQLFLAHN IPLETIIPIL QHLKYKEHPE ALSCLLLQLR bmy_09684T0/1-1017 ---------- ---------- ---------- ------KHPE ALSCLLLQLR BACU007489/1-981 SLDWETFEQY CAWQLFLAHN IPLETIIPIL QHLKYKEHPE ALSCLLLQLR ENSBTAP00000008186/1-1040 SLDWETFEQY CAWQLFLAHN IPLETIIPIL QHLKYKEHPE ALSCLLLQLR 851 900 ENSTTRP00000014009/1-1038 REKPSEEMVK MVLSRPCHPD DQFTTSILRH WCMKHDELLA EHIKSLLIKN ENSP00000318641/1-1042 REKPSEEMVK MVLSRPCHPD DQFTTSILRH WCMKHDELLA EHIKSLLIKN bmy_09684T0/1-1017 REKPSEEMVK MVLSRPCHPD DQFTTSILRH WCMKHDELLA EHIKSLLIKN BACU007489/1-981 REKPSEEMVK MVLSRPCHPD DQFTTSILRH WCMKHDELLA EHIKSLLIKN ENSBTAP00000008186/1-1040 REKPSEEMVK MVLSRPCHPD DQFTTSILRH WCMKHDELLA EHIKSLLIKN 901 950 ENSTTRP00000014009/1-1038 NSLPRKRQSL RSSSSKLAQL TLEQILEHLD NLRLNLTNTK QN-------- ENSP00000318641/1-1042 NSLPRKRQSL RSSSSKLAQL TLEQILEHLD NLRLNLTNTK QN-------- bmy_09684T0/1-1017 NSLPRKRQSL RSSSSKLAQL TLEQILEHLD NLRLNLTNTK QNCMLSCPLR BACU007489/1-981 NSLPRKRQSL RSSSSKLAQL TLEQILEHLD NLRLNLTNTK QN-------- ENSBTAP00000008186/1-1040 NSLPRKRQSL RSSSSKLAQL TLEQILEHLD NLRLNLTNTK QN-------- 951 1000 ENSTTRP00000014009/1-1038 ---------- ---------- ---------- -FFSQTPILQ ALQHVQASCD ENSP00000318641/1-1042 ---------- ---------- ---------- -FFSQTPILQ ALQHVQASCD bmy_09684T0/1-1017 VHGTALAHTT RGSEWGSSQT PHCSSFPVLP LVFSQTPILQ ALQHVQASCD BACU007489/1-981 ---------- ---------- ---------- -FFSQTPILQ ALQHVQASCD ENSBTAP00000008186/1-1040 ---------- ---------- ---------- -FFSQTPILQ ALQHVQASCD 1001 1050 ENSTTRP00000014009/1-1038 EAHKMKFSDL FSLAEEYEDS STKPPKSRRK AALSSPRSRK NATQPPNAEE ENSP00000318641/1-1042 EAHKMKFSDL FSLAEEYEDS STKPPKSRRK AALSSPRSRK NATQPPNAEE bmy_09684T0/1-1017 EAHKMKFSDL FSLAEEYEDS STKPPKSRRK AALSSPRSRK NATQPPNAEE BACU007489/1-981 EAHKMKFSDL FSLAEEYEDS STKPPKSRRK AALSSPRSRK NATQPPNAEE ENSBTAP00000008186/1-1040 EAHKMKFSDL FSLAEEYEDS STKPPKSRRK AALSSPRSRK NATQPPNAEE 1051 1100 ENSTTRP00000014009/1-1038 ESGSSSASEE EDTKPKPTKR KRKGSSAVGS DSD ENSP00000318641/1-1042 ESGSSSASEE EDTKPKPTKR KRKGSSAVGS DSD bmy_09684T0/1-1017 ESGSSSASEE EDTKPKPTKR KRKGSSAVGS DSD BACU007489/1-981 ESGSSSASEE EDTKPKPTKR KRKGSSAVGS DSD ENSBTAP00000008186/1-1040 ESGSSSASEE EDTKPKPTKR KRKGSSAVGS DSD