KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:34:36 2014 Check: 00 .. Name: ENSBTAP00000008193/1-999 Len: 1015 Check: 9033 Weight: 1.00 Name: bmy_04880T0/1-930 Len: 1015 Check: 9417 Weight: 1.00 Name: BACU003972/1-1008 Len: 1015 Check: 5779 Weight: 1.00 Name: ENSTTRP00000005038/1-1007 Len: 1015 Check: 3395 Weight: 1.00 // 1 50 ENSBTAP00000008193/1-999 MVGDARPSGV RAGGCRGAVG SRTSSRALRP PLPPLSSLFV LFLAAPCAWA bmy_04880T0/1-930 MGADARSSGV RAGGGRGAAG SRTSSWALWP PIPLLSFLFL LLLATPSAWA BACU003972/1-1008 MGADARSSGV YAGGGRGAAG SRTSSWALWP SIPLLSFLFL LLLATPSAWA ENSTTRP00000005038/1-1007 MAADARSSGV RAGGGRGAAA SRTSSWSLWP PLPPLSFLFL LLLATPSAWA 51 100 ENSBTAP00000008193/1-999 AGYKTCPKVK PDMLNVHLVP HTHDDVGWLK TVDQYFYGIY NNIQPAGVQY bmy_04880T0/1-930 AGYQTCPKVE PDMLNVHLVA HTHDDVGWLK TVDQYFYGIQ NDVQHAGVQY BACU003972/1-1008 AGYQTCPKVE PDMLNVHLVP HTHDDVGWLK TVDQYFYGIQ NDVQHAGVQY ENSTTRP00000005038/1-1007 AGYQTCPKVE PDMLNVHLVA HTHDDVGWLK TVDQYFYGIK NDVQHAGVQY 101 150 ENSBTAP00000008193/1-999 ILDSVISSLL ANPTRRFIYV EIAFFSRWWR QQTNATQKIV RELVRQGRLE bmy_04880T0/1-930 ILDSVISSLL VEPTRRFIYV EIAFFSRWWR QQTNATQEIV RDLVRQGRLE BACU003972/1-1008 ILDSVISSLL AEPTRRFIYV EIAFFSRWWR QQTNATQEIV RDLVRQGRLE ENSTTRP00000005038/1-1007 ILDSVISSLL AEPTRRFIYV EIAFFSRWWR QQTNATQEIV RDLVRQGRLE 151 200 ENSBTAP00000008193/1-999 FANGGWVMND EATTHYGAII DQMTLGLRFL EETFGSDGRP RVAWHIDPFG bmy_04880T0/1-930 FANGGWVMND EAATHYGAII DQMTLGLRFL EDTFGSDGRP RVAWHIDPFG BACU003972/1-1008 FANGGWVMND EAATHYGAII DQMTLGLRFL EDTFGSDGRP RVAWHIDPFG ENSTTRP00000005038/1-1007 FANGGWVMND EAATHYGAII DQMTLGLRFL EDTFGSDGRP RVAWHIDPFG 201 250 ENSBTAP00000008193/1-999 HSREQASLFA QMGFDGFFFG RLDYQDKKVR KKTLQMEQVW RASTSLKPPT bmy_04880T0/1-930 HSREQASLFA QMGFDGFFFG RLDYQDKSAR KEKMEME--- ---------- BACU003972/1-1008 HSREQASLFA QMGFDGFFFG RLDYQDKSAR KEKMEMEQVW RASASLKPPT ENSTTRP00000005038/1-1007 HSREQASLFA QMGFDGFFFG RLDYQDKSAR KEKMEMEQVW RASASLKPPA 251 300 ENSBTAP00000008193/1-999 ADLFTSVLPN MYNPPEGLCW DMLCADKPVV EDTRSPEYNA KELVRYFLKL bmy_04880T0/1-930 ---------- ---------- ---------- ---------- ---------- BACU003972/1-1008 ADLFTSVLPN IYNPPDGLCW DTLCADRPFV EDPLSPEYNA KDLVHYFLKL ENSTTRP00000005038/1-1007 ADLFTSVLPN IYNPPDGLCW DTLCADRPFV EDPLSPEYNA KDLVHYFLQL 301 350 ENSBTAP00000008193/1-999 ATDQGKLYRT KHTVMTMGSD FQYENANTWF KNLDKLIQLV NAQQRANGIR bmy_04880T0/1-930 ---QGQHYRT NHTVMTMGSD FQYENANMWF KNLDKLIQLV NAQQQANGSR BACU003972/1-1008 ATAQGQQYRT NHTVMTMGSD FQYENANMWF KNLDKLIQLV NAQQQANGSR ENSTTRP00000005038/1-1007 ATAQGQHYRT NHTVMTMGSD FQYENANMWF KNLDKLIQLV NAQQ-ANGSR 351 400 ENSBTAP00000008193/1-999 VNVLYSTPAC YLWELNKANL SWSVKKDDFF PYADGPYMFW TGYFSSRPAL bmy_04880T0/1-930 VNVLYSTPAC YLWQLNKANL TWSLKEDDFF PYADGPHMFW TGYFSSRPAL BACU003972/1-1008 VNVLYSTPAC YLWQLNKANL TWSLKEDDFF PYADGPHMFW TGYFSSRPAL ENSTTRP00000005038/1-1007 VNVLYSTPAC YLWQLNKANL TWSLKEDDFF PYADGPHMFW TGYFSSRPAL 401 450 ENSBTAP00000008193/1-999 KRYERLSYNF LQVCNQLEAL AGPAANVGPY GSGDSAPLNE AMAVLQHHDA bmy_04880T0/1-930 KRYERLSYNF LQVCNQLEAL VGPAANVGPY GSGDSAPLNE AMAVLQHHDA BACU003972/1-1008 KRYERLSYNF LQVCNQLEAL VGPAANVGPY GSGDSAPLNE AMAVLQHHDA ENSTTRP00000005038/1-1007 KRYERLSYNF LQVCNQLEAL AGPAANVGPY GSGDSAPLNE AMAVLQHHDA 451 500 ENSBTAP00000008193/1-999 VSGTSRQHVA NDYARQLSEG WRPCEVLMSN ALAHLSGLKE DFAFCRKLNI bmy_04880T0/1-930 VSGTSRQHVA NDYARQLAEG WGPCEVLLSN ALARLSGSKE DFMFCRKLNI BACU003972/1-1008 VSGTSRQHVA NDYARQLAEG WGPCEVLLSN ALARLSGSKE DFMFCRKLNI ENSTTRP00000005038/1-1007 VSGTSRQHVA NDYARQLAEG WGPCEVLLSN ALARLSGSKE DFMFCRKLNI 501 550 ENSBTAP00000008193/1-999 SICPLTQTAE RFQVIVYNPL GRKVDWMVRL PVSKHVYLVK DPGGKIVPSD bmy_04880T0/1-930 SVCPLTQTSE SFQVTIYNPL GRKVDRMVRL PVSKHVFLVR DPSGTVVPSD BACU003972/1-1008 SVCPLTQTSE SFQVTIYNPL GRKVDWMVRL PVSKHVFLLR DPSGTVVPSD ENSTTRP00000005038/1-1007 SVCPLTQTSE SFQVTIYNPL GRKVDWMVRL PVSKHVFLVR DPSGTVVPSD 551 600 ENSBTAP00000008193/1-999 VVTIPSSDSQ ELLFSALVPA VGFSIYSVSQ MPNQRP---- -----QKSWS bmy_04880T0/1-930 VVMIPSSDSQ ELLFSASVPA LGFSIYSVTQ VPGQSPQAHI HHPRSQKPWS BACU003972/1-1008 VVMIPSSDSQ DLLFLASVPA LGFSIYSVTQ VPGQSPQAHI HHPRSQKPWS ENSTTRP00000005038/1-1007 VVMIPSSDSQ ELLFSASVPA LGFSIYSVTQ VPGQSPQAYI HHPRSQKPWS 601 650 ENSBTAP00000008193/1-999 RDLVIQNEYL RARFDPNTGL LMELENLEQN LLLPVRQAFY WYNASTGNNL bmy_04880T0/1-930 RALV-QRQY- ---------- -------RQQ SKLPGLRCLH LQTQPTGTTA BACU003972/1-1008 RVLVIQNEYI RARFDPDSGL LMELENLDQN LRLPVRQAFY WYNASTGNSL ENSTTRP00000005038/1-1007 RVLVIQNEYI RARFDPDSGL LMELENLDQN LRLPVRQAFY WYNASTGNGL 651 700 ENSBTAP00000008193/1-999 SSQA------ -SGAYIFRPN QNKPLFVSHW AQTHLVKASL VQEVHQNFSA bmy_04880T0/1-930 CEPLGSNPPC EAGVDICRAH LCSAARLHLP FTPMCLQTAL VQEVHQNFSA BACU003972/1-1008 SSQV------ -SGAYIFRPN RQEPLLVSHW AQTHLVKTAL VQEVHQNFSA ENSTTRP00000005038/1-1007 SSQV------ -SGAYIFRPN RQQPLLVSHW AQTHLVKTAL VQEVHQNFSA 701 750 ENSBTAP00000008193/1-999 WCSQVVRLYP RQRHLELEWT VGPIPVGDGW GKEVISRFDT ALATRGLFYT bmy_04880T0/1-930 WCSQVVRLYP GQRHLELEWT VGPIPVGDGW GKEVISRFDT VLETDGLFYT BACU003972/1-1008 WCSQVVRLYP GQRHLELEWT VGPIPVGDGW GKEVISRFDT VLETDGLFYT ENSTTRP00000005038/1-1007 WCSQVVRLYP GQRHLELEWT VGPIPVGDGW GKEVISRFDT VLETDGLFYT 751 800 ENSBTAP00000008193/1-999 DSNGREILER RRNYRPTWKL NQTEPVAGNY YPVNSRIYIT DGNMQLTVLT bmy_04880T0/1-930 DSNGREILER RRDYRLTWKL NQTEPVAGNY YPVNSRIYIT DGNVQLTVLT BACU003972/1-1008 DSNGREILER RRDYRLTWKL NQTEPVAGNY YPVNSRIYIT DGNVQLTVLT ENSTTRP00000005038/1-1007 DSNGREILER RRDYRLTWKL NQTEPVAGNY YPVNSRIYIT DGNVQLTVLT 801 850 ENSBTAP00000008193/1-999 DRSQGGSSLR DGSLELMVHR RLLKDDARGV GEPLNKEGSG LWVRGRHLVL bmy_04880T0/1-930 DRSQGGSSLS DGSLELMVHR RLLRDDARGV GEPLLEEGSG LWVRGRHLVL BACU003972/1-1008 DRSQGGSSLS DGSLELMVHR RLLRDDARGV GEPLLEEGSG LWVRGRHLVL ENSTTRP00000005038/1-1007 DRSQGGSSLS DGSLELMVHR RLLRDDARGV GEPLLEEGSG LWVRGRHLVL 851 900 ENSBTAP00000008193/1-999 LDKKETAAAR HRLQAEMEVL APQVVLAQGG GARYRLEKAP RTQFSGLRRE bmy_04880T0/1-930 LDKARTAAAG HRLQAEKEVL APQVVLARGG GAPYRLEVAP RTQFSGLRRE BACU003972/1-1008 LDKARTAAAG HRLQAEKEVL APQVVLARGG GAPYRLEVAP RTQFSGLRRE ENSTTRP00000005038/1-1007 LDKARTAAAG HRLQAEKEVL APQVVLARGG GAPYRLEVAP RTQFSGLRRE 901 950 ENSBTAP00000008193/1-999 LPPSVRLLTL ARWGPETLLL RLEHQFAVGE DSGRNLSSPV TLDLTNLFSA bmy_04880T0/1-930 LPPSVHLLTL ARWGPETLLL RLEHQFAVGE DSGRNLSSPV TLDLMDLFSA BACU003972/1-1008 LPPSVHLLTL ARWGPETLLL RLEHQFAVGE DSGRNLSSPV TLDLTDLFSA ENSTTRP00000005038/1-1007 LPPSVHLLTL ARWGPETLLL RLEHQFAVGE DSGRNLSSPV TLDLTDLFSA 951 1000 ENSBTAP00000008193/1-999 FTITNLRETT LAANQLLAYA SRLQWTTDTG PTPHPSPSRP VSATITLQPM bmy_04880T0/1-930 FTITDLRETT LAANQLRAHA SRLQWTPNTG PTPHPSPSRL VSTTITLQPM BACU003972/1-1008 FTITDLRETT LAANQLRAHA SRLQWTPNTG PTPHPSPSRL VSTTITLQPM ENSTTRP00000005038/1-1007 FTITDLRETT LAANQLRAHA SRLQWTPNTG PTPHPSPSRL LSTTITLQPM 1001 1050 ENSBTAP00000008193/1-999 EIRTFLASVQ WEEDG bmy_04880T0/1-930 EIRTFLASVQ WEEDG BACU003972/1-1008 EIRTFLASVQ WEEDS ENSTTRP00000005038/1-1007 EIRTFLASVQ WEEDS