KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:47 2014 Check: 00 .. Name: ENSTTRP00000011007/1-337 Len: 381 Check: 126 Weight: 1.00 Name: BACU019841/1-341 Len: 381 Check: 3944 Weight: 1.00 Name: bmy_10443T0/1-212 Len: 381 Check: 9625 Weight: 1.00 Name: ENSP00000326888/1-365 Len: 381 Check: 3536 Weight: 1.00 Name: ENSBTAP00000008216/1-341 Len: 381 Check: 1036 Weight: 1.00 // 1 50 ENSTTRP00000011007/1-337 ---------- ---------- --------NM SNALANAVCQ RCQARFAPAE BACU019841/1-341 ---------- ---------- --------NM SNALANAVCQ RCQARFAPAE bmy_10443T0/1-212 ---------- ---------- ---------- ------ASVQ AAGGGWG--- ENSP00000326888/1-365 MAARLGALAA SGLYRRRQHR QSPPPATGNM SDALANAVCQ RCQARFSPAE ENSBTAP00000008216/1-341 ---------- ---------- ----MTGSNM SNALANAVCQ RCQARFAPAE 51 100 ENSTTRP00000011007/1-337 RIVNSSGELY HEHCFVCAQC FRPFPDGLFY ELEGRKYCEH DFQMLFAPCC BACU019841/1-341 RIVNSNGELY HEHCFVCAQC FRPFPEGLFY ELEGRKYCEH DFQMLFAPCC bmy_10443T0/1-212 RLLQGGG--- ---------- ---------- ---------- -------PGC ENSP00000326888/1-365 RIVNSNGELY HEHCFVCAQC FRPFPEGLFY EFEGRKYCEH DFQMLFAPCC ENSBTAP00000008216/1-341 RIVNSNGELY HEHCFVCAQC FRPFPEGLFY EFEGRKYCEH DFQMLFAPCC 101 150 ENSTTRP00000011007/1-337 RTCGEFIIGR VIKAMNNNWH PGCFRCELCD VELADLGFVK NAGXXXXXXX BACU019841/1-341 RTCGEFIIGR VIKAMNNNWH PGCFRCELCD VELADLGFVK NAGR---RPF bmy_10443T0/1-212 -------LGR KRSGSAPDPH L--------- ---------- TSHRHLCRPC ENSP00000326888/1-365 GSCGEFIIGR VIKAMNNNWH PGCFRCELCD VELADLGFVK NAGRHLCRPC ENSBTAP00000008216/1-341 GSCGEFIIGR VIKAMNNNWH PGCFRCELCD VELADLGFVK NAGRHLCRPC 151 200 ENSTTRP00000011007/1-337 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX--XXXXXX XXXXXXXXXX BACU019841/1-341 KLRA---GAG LLFSRK---- VAQAAWGGRG AALPLTPSSL LTGTCADPAT bmy_10443T0/1-212 HNREKAKGLG KYICQRCHLV IDEQPLMFRN DA--YHPDHF SCTHCGKELT ENSP00000326888/1-365 HNREKAKGLG KYICQRCHLV IDEQPLMFRS DA--YHPDHF NCTHCGKELT ENSBTAP00000008216/1-341 HNREKAKGLG KYICQRCHLV IDEQPLMFKN DA--YHPDHF SCTHCGKELT 201 250 ENSTTRP00000011007/1-337 X--XXXXXXX XXXXXXXXXX XXXXXXX--- -----XXXXX XXXXXXXXXX BACU019841/1-341 TVRRPRAWAS TSVSAATWSS TSSPSCSGMM PTTRTTSAAP TAGR--GTAG bmy_10443T0/1-212 A--EARELKG ELYCLPCHDK MGVPICG--- -----ACRRP IEGRVVNALG ENSP00000326888/1-365 A--EARELKG ELYCLPCHDK MGVPICG--- -----ACRRP IEGRVVNALG ENSBTAP00000008216/1-341 A--EARELKG ELYCLPCHDK MGVPICG--- -----ACRRP IEGRVVNALG 251 300 ENSTTRP00000011007/1-337 XXXXXXHFVC AKCEKPFLGH RHYEKKGLAY CETHYNQL-- -FGDVCYTCS BACU019841/1-341 ARPTGKHFVC AKCEKPFLGH RHYEKKGLAY CETHYNQVGP GAGEAGAAGS bmy_10443T0/1-212 KQWHVEHFVC AKCEKPFLGH RHYEKKGLAY CETHYNQL-- -FGDVCYTCS ENSP00000326888/1-365 KQWHVEHFVC AKCEKPFLGH RHYEKKGLAY CETHYNQL-- -FGDVCYNCS ENSBTAP00000008216/1-341 KQWHVEHFVC AKCEKPFLGH RHYEKKGLAY CETHYNQL-- -FGDVCYTCS 301 350 ENSTTRP00000011007/1-337 HVIEGDV-VS ALNKAWCVHC FSCSTCNSRL TLKNKFVEFD MKPVCKRCYE BACU019841/1-341 RQGAGCVMVS ALNKAWCVHC FSCSTCNSRL TLKNKFVEFD MKPVCKRCYE bmy_10443T0/1-212 HVIEGDV-VS ALNKAWCVHC FSCSTCNSRL TLK------- ---------- ENSP00000326888/1-365 HVIEGDV-VS ALNKAWCVSC FSCSTCNSKL TLKNKFVEFD MKPVCKRCYE ENSBTAP00000008216/1-341 HVIEGDV-VS ALNKAWCVHC FSCSTCNSRL TLKNKFVEFD MKPVCKRCYE 351 400 ENSTTRP00000011007/1-337 KFPLELKKRL KKLSELAARR AQPKSAGLQP A BACU019841/1-341 KFPLELKKRL KKLSELAARR AQPKSAGLQP A bmy_10443T0/1-212 ---------- ---------- ---------- - ENSP00000326888/1-365 KFPLELKKRL KKLSELTSRK AQPKATDLNS A ENSBTAP00000008216/1-341 KFPLELKKRL KKLSELAARR AQPKSSGLHP A