KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:34:47 2014 Check: 00 .. Name: ENSP00000370767/1-537 Len: 574 Check: 4557 Weight: 1.00 Name: ENSBTAP00000008217/1-534 Len: 574 Check: 9999 Weight: 1.00 Name: bmy_06291T0/1-515 Len: 574 Check: 9466 Weight: 1.00 Name: ENSTTRP00000001332/1-534 Len: 574 Check: 4756 Weight: 1.00 // 1 50 ENSP00000370767/1-537 ---------- ---------- ---------- -----MPHLM ERMVGSGLLW ENSBTAP00000008217/1-534 ---------- ---------- ---------- -----MSQLL ERM--TSVLW bmy_06291T0/1-515 MARGGGGMLC VLTSRSFPPA LPPAAWIICG PLSDRMSQLM ERM--APVLW ENSTTRP00000001332/1-534 ---------- ---------- ---------- -----MSQFM GRM----SLW 51 100 ENSP00000370767/1-537 LALVSCILTQ ASAVQRGYGN PIEASSYGLD LDCGAPGTPE AHVCFDPCQN ENSBTAP00000008217/1-534 LALASYILTL SSTEQQGYRN STNTGSYEKD LDCGAPGTPE AQLCFDPCQN bmy_06291T0/1-515 LALASCILTL ASTEQQGYRN PTNDSSYEQD LECGAPGTPE AQLCFDPCQN ENSTTRP00000001332/1-534 LALASCILTL ASTEQQGYRN PTSASSYEQG LECGAPGTPE AQLCFDPCQN 101 150 ENSP00000370767/1-537 YTLLDEPFRS TENSAGSQGC DKNMSGWYRF VGEGGVRMSE TCVQVHRCQT ENSBTAP00000008217/1-534 YTLLNEPFRS TENTEDIQGC DSDKHGWYRF VGDGGVRMPE DCVPTFRCQT bmy_06291T0/1-515 YTLLDEPSRS TENAEKVESC DSDKHGWYRF VGDGGVRMPE DCVPVYHCQT ENSTTRP00000001332/1-534 YTLLDEPSRS TENTGEDEKC DSDKHGWYRF VGDGGVRMPE DCVPVHHCQT 151 200 ENSP00000370767/1-537 DAPMWLNGTH PALGDGITNH TACAHWSGNC CFWKTEVLVK ACPGGYHVYR ENSBTAP00000008217/1-534 SAPLWLNGTH PGLGEGIVNR TACAHWSGNC CLWKTEVLVK ACPGPYYVYR bmy_06291T0/1-515 AAPMWLNGTH PTLGQGIVSR TACAHWSGNC CLWKTEVLVK ACPGQYHVYR ENSTTRP00000001332/1-534 AAPVWLNGTH PTVGEGIVNR IACAHWSGNC CLWKTEVLVK ACPGQYHVYR 201 250 ENSP00000370767/1-537 LEGTPWCNLR YCTVPRDPST VEDKCEKACR PEEECLALNS TWGCFCRQDL ENSBTAP00000008217/1-534 LEGTPQCSLR YCT---DPAT AEDKCDRTCR PEEECRLVSG TWGCFCRQDL bmy_06291T0/1-515 LEGTPQCSLR YCT------- ---------- ---------- ---------- ENSTTRP00000001332/1-534 LEGIPKCDLR YCTAS-DPAT TQHNCERTCR SKEECRFVSG TWDCFCRQDL 251 300 ENSP00000370767/1-537 NSSDVHSLQP QLDCGPREIK VKVDKCLLGG LGLGEEVIAY LRDP--NCSS ENSBTAP00000008217/1-534 NVSDVHSLQP QLDCGDTEIK VSLDKCLLGS LGFGDEVHAY LRDGNWNCSS bmy_06291T0/1-515 ---DVHSLQP QLDCGAKEIK VSLDKCLLGG LGFGDEVHAY LQDR--NCSS ENSTTRP00000001332/1-534 NISDVHSLQP QLDCQAKEIK VSLDKCLLEG LGFGDEVHAY LQDQNWNCSS 301 350 ENSP00000370767/1-537 ILQTEERNWV SVTSPVQASA CRNILERNQT HAIYKNTLSL VNDFIIRDTI ENSBTAP00000008217/1-534 LRQSEEENWI SVTNPTQAGA CGNILERNQT HAIYINTLSL VNDFIIRDTI bmy_06291T0/1-515 MMQREEKNWI SVTSPTQAGA CGNILERNQT HAIYKNTLSL VNDFIIRDII ENSTTRP00000001332/1-534 MMRREENNWI SVTSPAKAGA CGNILERNQT HAIYKNTLFL VNDFIIRDTI 351 400 ENSP00000370767/1-537 LNINFQCAYP LDMKVSLQAA LQPIVSSLNV SVDGNGEFIV RMALFQDQNY ENSBTAP00000008217/1-534 LSINFQCAYP LDMKVSLQMA LQPIVSSLNI TVDGEGEFTV RMALFQDQDY bmy_06291T0/1-515 LSVNFQCAYP LDMKVSLQTA LQPIVSSLNI SVDGEGEFTV RMALFQDQNY ENSTTRP00000001332/1-534 LSINFQCAYP LDMKVSLQTA LKPIVSSLNI SVDGEGEFTV RMALFQDQNY 401 450 ENSP00000370767/1-537 TNPYEGDAVE LSVESVLYVG AILEQGDTSR FNLVLRNCYA TPTEDKADLV ENSBTAP00000008217/1-534 TSPYEGTAVM LSVESMLYVG TILERGDTSR FNLVLKNCYA TPTEDKTDPV bmy_06291T0/1-515 TSPYEGAAVV LSVESMLYVG TILERGDTSR FNLVLRNCYA TPTGDMNDPV ENSTTRP00000001332/1-534 TSPYEGSAVV LSVESMLYVG AILERGDTSR FNLVLRNCYA TPTGDMNDPV 451 500 ENSP00000370767/1-537 KYFIIRNSCS NQRDSTIHVE ENGQSSESRF SVQMFMFAGH YDLVFLHCEI ENSBTAP00000008217/1-534 KYFIIRNSCP NQRDSTISVE ENGVSAESRF SVQMFKFAGN YDLVFLHCEV bmy_06291T0/1-515 RYFIIRNSCP NKRDSTIYVE ENGVSSESRF SVQMFMFAGN YDLVFLHCEI ENSTTRP00000001332/1-534 RYFIIRNSCP NKRDSTIYVE ENGVSPESRF SVQMFMFAGN YDLVFLHCEI 501 550 ENSP00000370767/1-537 HLCDSLNEQC QPSCSRSQVR SEVPAIDLAR VLDLGPITRR GAQSPGVMNG ENSBTAP00000008217/1-534 SLCDFIKEEC QPSCSRSQLR SEGVAIDPAR VLDLGPITRK GAQSLGVMSG bmy_06291T0/1-515 SLCDSLKEQC QPSCSRSQLR SEGVAIDPAR VLDLGPITRR ---------- ENSTTRP00000001332/1-534 SLCNSLKEQC QPSCSRNQLR SEGVAIDPAR VLDLGPITRR GAQSLGVMSG 551 600 ENSP00000370767/1-537 TPSTAGFLVA WPMVLLTVLL AWLF ENSBTAP00000008217/1-534 TPNTAGFLVA WPLVLLPVLL AGLF bmy_06291T0/1-515 -----VFLVA WPVLLLPVLL AGLL ENSTTRP00000001332/1-534 TTSTAVFLVA WPMLLLPVLL AGLF