KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:49 2014 Check: 00 .. Name: ENSP00000462333/1-743 Len: 804 Check: 7727 Weight: 1.00 Name: ENSTTRP00000003447/1-673 Len: 804 Check: 7187 Weight: 1.00 Name: ENSBTAP00000008236/1-736 Len: 804 Check: 5924 Weight: 1.00 Name: bmy_17061T0/1-678 Len: 804 Check: 4594 Weight: 1.00 Name: BACU011579/1-727 Len: 804 Check: 104 Weight: 1.00 // 1 50 ENSP00000462333/1-743 MEAAAVTVTR SATRRRRRQL QGLAAPEAGT QEEQEDQEPR PRRRRPGRSI ENSTTRP00000003447/1-673 ---------- ---------- ---------- ---------- ---------I ENSBTAP00000008236/1-736 -----MEEAG TGTRTAARR- QGRRMRAPAT LEKQRDRRPA GRLTR--RRI bmy_17061T0/1-678 ---------- ---------- ---------- ---------- ---------- BACU011579/1-727 MIVEECVLTD GGAHADVNQ- EGLNIRCAGR ---------- ----S--SRT 51 100 ENSP00000462333/1-743 KDEEEETVFR EVVSFSPDPL PVRYYDKDTT KPISFYLSSL EELLAWKPRL ENSTTRP00000003447/1-673 EEDQEEAVFR EVVSFTPDPL PVRYYDKDTT KPISFYLSSL EELLAWTPNM ENSBTAP00000008236/1-736 EEDREEAVFR EVVSFTPDPL PVRYYDKDTT RPISFYLSSL EELLAWRPDA bmy_17061T0/1-678 ---------- ---------- ---------- ---------- ---------- BACU011579/1-727 EEDQEEAVFR EVVSFTPDPL PVRYYDKDTT KPISFYLSSL EELLAWTPDV 101 150 ENSP00000462333/1-743 EDGFNVALEP LACRQPPLSS QRPRTLLCHD MMGGYLDDRF IQGSVVQTPY ENSTTRP00000003447/1-673 EDGFNVALGP PECRQPPLSS RRPRTLMCHD MMGGYLDDXX XXXXXXXXXX ENSBTAP00000008236/1-736 EDGFNVALGP PECRQPPLSS RRPRTLMCHD MMGGYLDDKF IQGSATQTPY bmy_17061T0/1-678 ---------- ---------- ------MCHD MMGGYLDDKF IQGSAAQSPY BACU011579/1-727 EDSFNVALGP PECRQPPLSS RRPRTLMCHD MMGGYLDDKF IQGSAAQSPY 151 200 ENSP00000462333/1-743 AFYHWQCIDV FVYFSHHTVT IPPVGWTNTA HRHGVCVLGT FITEWNEGGR ENSTTRP00000003447/1-673 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXT FITEWKEGER ENSBTAP00000008236/1-736 SFYHWQYIDI FVYFSHHTVT IPPVGWTNAA HRHGVCVLGT FITEWKDGER bmy_17061T0/1-678 SFYHWQYIDI FVYFSHHTVT IPPVGWTNAA HRHGVCVLGT FITEWKEGER BACU011579/1-727 SFYHWQYIDI FVYFSHHTVT IPPVGWTNAA HRHGVCVLGT FITEWKEGER 201 250 ENSP00000462333/1-743 LCEAFLAGDE RSYQAVADRL VQITQFFRFD GWLINIENSL SLAAVGNMPP ENSTTRP00000003447/1-673 LCEAFLAGDE RSYQAVARQL VLIAQFFRFD GWLINIENSL SLAAVGNVPH ENSBTAP00000008236/1-736 LCQAFLAGDE HSYRAVADQL VLIAQFFRFD GWLINIENSL SLAAVGNVPH bmy_17061T0/1-678 LCEAFLAGDE RSYRAVAHQL VLIAQFFRFD GWLINIENSL SLAAVGNMPH BACU011579/1-727 LCEAFLAGDE RSYRAVAHQL VLIAQFFRFD GWLINIENSL SLAAVGNVPH 251 300 ENSP00000462333/1-743 FLRYLTTQLH RQVPGGLVLW YDSVVQSGQL KWQDELNQHN RVFFDSCDGF ENSTTRP00000003447/1-673 FLRYLTTQLH QQVPRGLVLW YDSVVSSGQL TWQDELNEHN RVFFDSCDGF ENSBTAP00000008236/1-736 FLQYLTSQLH QQVPGGLVLW YDSVVSSGQL KWQNELNEQN RVFFDACDGF bmy_17061T0/1-678 FLRYLTTQLH QQVPRGLVLW YDSVVSSGQL TWQDELNEHN RVFFDSCDGF BACU011579/1-727 FLRYLTTQLH QQVPRGLVLW YDSVVSSGQL TWQDELNEQN RVFFDSCDGF 301 350 ENSP00000462333/1-743 FTNYNWREEH LERMLGQAGE RRADVYVGVD VFARGNVVGG RFDTDKSLEL ENSTTRP00000003447/1-673 FTNYNWREEH LERMLGQAGE RLADVYVGVD VFARGNVVGG RFHTDKLL-- ENSBTAP00000008236/1-736 FTNYNWREEH LERTLGQAGE RRADVYVGVD VFARGNVVGG RFDTNKSLEL bmy_17061T0/1-678 FTNYNWREEH LERMLGQAGE RLADVYVGVD VFARGNVVGG RFDTDKSLEL BACU011579/1-727 FTNYNWREEH LERMLGQAGE RLADVYVGVD VFARGNVVGG RFDTDKSLEL 351 400 ENSP00000462333/1-743 IRKHGFSVAL FAPGWVYECL EKKDFFQNQD KFWGRLERYL PTHSICSLPF ENSTTRP00000003447/1-673 --------AL FPWGW----- -------GQG KFWSLLERYL PTHSICSLPF ENSBTAP00000008236/1-736 IRKHGFSAAL FAPGWVYECL EKGNFFQNQD KFWSLLERYL PTHSICSLPF bmy_17061T0/1-678 IRKHGFSAAL FAPGWVYECL EKGDFFQNQD KFWSLLERYL PTHSICSLPF BACU011579/1-727 IRKHGFSVAL FAPGWVYECL EKGDFFQNQD KFWGLLERYL PTHSICSLPF 401 450 ENSP00000462333/1-743 VTSFCLGMGA RRVCYG---- ---------- ---------- ---------- ENSTTRP00000003447/1-673 VTSFCLGMGT RRVCYG---- ---------- ---------- ---------- ENSBTAP00000008236/1-736 VTSFCLGMGT RRVYYG---- ---------- ---------- ---------- bmy_17061T0/1-678 VTSFCLGMGT RRVCYGQVRG SPAGWPGARA FLDMPHLGEG AAFSLVFGPH BACU011579/1-727 VTSFCLGMGT RRVCYG---- ---------- ---------- ---------- 451 500 ENSP00000462333/1-743 ---------- ---------- ------QEEA VGPWYHLSAQ EIQPLFGEHR ENSTTRP00000003447/1-673 ---------- ---------- ------QEEA VGPWYHLSAQ EIQPLFGEHR ENSBTAP00000008236/1-736 ---------- ---------- ------QEEA VGPWYHPSAQ EIQPLFGEHR bmy_17061T0/1-678 LGPVGGGLGR DGSICPLPSL HFGLFLQEEA VGPWYHLSAQ EIQPLFGEHR BACU011579/1-727 ---------- ---------- ------QEEA VGPWYHLSAQ EIQPLFGEHR 501 550 ENSP00000462333/1-743 LGGDGRGWVR THCCLEDAWH GGSSLLVRGV IPPEVGNVAV RLFSLQAPVP ENSTTRP00000003447/1-673 LEGDGRGWVK MHCCLEDAWN GGSSLLIRGL IPPEVGNVSV RLFSLQVPVP ENSBTAP00000008236/1-736 LEGDGQGWVK THCCLEDSWN GGSSLLIRGL IPPEVGNVAV RLFSLQVPVP bmy_17061T0/1-678 LEGDGRGWVK MHCCLADAWN GGSSLVIRGL IPPEVGNVAV RLFSLQVPVP BACU011579/1-727 LQGDGRGWVK MHCCLADAWN GGSSLVIRGL IPPEVGNVAV RLFSLQVPVP 551 600 ENSP00000462333/1-743 PKIYLSMVYK LEGPTDVTVA LELTTGDAGS CHIGGISVLN AETSSRHSLR ENSTTRP00000003447/1-673 PKVFLSMVYK LEGPSAVGVA LELTTGDAGS CHVGGISALS AETSSRRSPR ENSBTAP00000008236/1-736 PKIFVSLVYK LEGPSAVGVA LELTTGDAGS CHVGGISVLS AETSSRRSPR bmy_17061T0/1-678 PKIFLSMVYK LEGPSAVGVA LELTTGDAGS CHVGGISALS AETSSRRSPR BACU011579/1-727 PKIFLSMVYK LEGPSAVGVA LELTTGDAGS CHVGGISALS AETSSRRSPR 601 650 ENSP00000462333/1-743 PLRVPPTKLA RWVGRCGRQL SGGWVQHCYE VSLRGCLLLD LLVCFSRPPG ENSTTRP00000003447/1-673 PLRVPPTKLA KWVGRCGQQL SGGWVQRCYE VNLRGCLLQA LFVNFSRPPG ENSBTAP00000008236/1-736 PLRVPPTKLA KWVGRCGQQL SGGWVQRCYE VTLRGCLLQD LFVNFSRPPG bmy_17061T0/1-678 PLRVPPTKLA KWVGRCGQQL SGGWVQRCYE VNLRGCLLQA LFVNFSRPPG BACU011579/1-727 PLRVPPTKLA KWVGRCGQQL SGGWVQRCYE VNLRGCLLQA LFVNFSRPPG 651 700 ENSP00000462333/1-743 SREEESFTCR LGEIQVVDAA SLLAPLPQVQ AVTISHIRWQ PSASEREGPP ENSTTRP00000003447/1-673 SQDEENFVCR LGEIQVVDAN SLLTPLPQVQ AVTVSQVRWQ PAASEGESGP ENSBTAP00000008236/1-736 SQKEENFICR LGELQVVDAN SLLTPLPQVQ AVTVSHVRWQ PFASEWEGGP bmy_17061T0/1-678 SQEEENFICR LGEIQVVDAN SLLTPLPQVQ AVTVSQVRWQ PAASEGESGA BACU011579/1-727 SQEEENFICR LGEIQVVDAS SLLSPLPQVQ AVTVSQVRWQ PAASEGESGA 701 750 ENSP00000462333/1-743 ALLQLSCTLH WSFLLSQVRC FRIHCWGGMS DDSPGRELPR PEMPMFLGLA ENSTTRP00000003447/1-673 AGLRLSCTLH WAYLLPHVRC FRIHCCRGSG GDSPCRGPSE PEKPTLLGLA ENSBTAP00000008236/1-736 AGLRLSCTLH WAYLLPRVRC FRIHCCRGSE GGSPSSGPSQ PGRPRLLGLA bmy_17061T0/1-678 AGLRLSCTLH WAYLLPPVRC FRIHCCRGSG GDSPCRGPSE PERPTLLGLA BACU011579/1-727 AGLRLSCTLH WGYLLPHVRC FRIHCCRGSG GDSPCRGPSE PEGPTLLGLA 751 800 ENSP00000462333/1-743 FATQYRIVDL LVEAAGPGQD RRMEFLVEPV PKEGFRVPQA EWGRAVLLYS ENSTTRP00000003447/1-673 FVNRYRIVDL AVAPAEPGRD GRVEFLVEPI PKEGFLVPRA EWGRAAMLYS ENSBTAP00000008236/1-736 FVNRYRIVGL AVAAAEPGQD GRVEFLVEPV PKEGFLVPQA EWGKAAILYS bmy_17061T0/1-678 FVNRYRIVDL AVAASEPGRD GRVEFLVEPI PKEGFLVPRA EWGRAAMLYS BACU011579/1-727 FVNRYRIVDL AVAAAEPGRD GRVEFLVEPI PKEGFLVPRA EWGRAAMLYS 801 850 ENSP00000462333/1-743 APA- ENSTTRP00000003447/1-673 TPRT ENSBTAP00000008236/1-736 MPRT bmy_17061T0/1-678 TPRT BACU011579/1-727 TPRT