KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:34:50 2014  Check: 00 ..

 Name: BACU001643/1-114          Len:    286  Check:  4825  Weight:  1.00
 Name: ENSTTRP00000016424/1-259  Len:    286  Check:  2546  Weight:  1.00
 Name: ENSP00000244763/1-286     Len:    286  Check:  6234  Weight:  1.00
 Name: bmy_00862T0/1-286         Len:    286  Check:  7628  Weight:  1.00
 Name: ENSBTAP00000008253/1-286  Len:    286  Check:  6614  Weight:  1.00

//


                          1                                                   50
BACU001643/1-114          MKSLPRLLLL LLQ-FPASLL LRGDPGGSLA AARDLTEDEE TVEDSINEDE 
ENSTTRP00000016424/1-259  ---------- ---------- -------SLA AAQDLTEDEE TVEDSVIEDE 
ENSP00000244763/1-286     MRLLPRLLLL LLLVFPATVL FRGGPRGLLA VAQDLTEDEE TVEDSIIEDE 
bmy_00862T0/1-286         MKSLPRLLLL LLLVFPATLL LRGRPGGSLA AAQDLTEDEE TVEDSVIEDX 
ENSBTAP00000008253/1-286  MSSLRRLLLL LLLVFPATLL LRVGPGGSLA VAQDLTEDEE TVEDSIIEDE 


                          51                                                 100
BACU001643/1-114          DDEAEVEDDE PTYLAEDKEE EDVSGEPEAS PSADTTILFV KGE-FPADNI 
ENSTTRP00000016424/1-259  DDEAEVEEDE PTDLVKDKEE EDVSGEPEAS PSADTTILFV KGEDFPANNI 
ENSP00000244763/1-286     DDEAEVEEDE PTDLVEDKEE EDVSGEPEAS PSADTTILFV KGEDFPANNI 
bmy_00862T0/1-286         DDEAEVEEDE PTDLAEDKEE EDVSGEPEAS PSADTTILFV KGEDFPANNI 
ENSBTAP00000008253/1-286  DDEAEVEEDE PTDLAEDKEE DDVSGEPEAS PSADTTILFV KGEDFPANNI 


                          101                                                150
BACU001643/1-114          VKFLVGFTDQ ---------- ---------- ---------- ---------- 
ENSTTRP00000016424/1-259  VKFLVGFTNK GTEDFVVESL DASFRYPQDY QFYIQNFTAL PLNTVVPPQR 
ENSP00000244763/1-286     VKFLVGFTNK GTEDFIVESL DASFRYPQDY QFYIQNFTAL PLNTVVPPQR 
bmy_00862T0/1-286         VKFLVGFTNK GTEDFIVESL DASFRYPQDY QFYIQNFTAL PLNTVVPPQR 
ENSBTAP00000008253/1-286  VKFLVGFTNK GTEDFIVESL DASFRYPQDY QFYIQNFTAL PLNTVVPPQR 


                          151                                                200
BACU001643/1-114          ---------- ---------I LLLNL----- ---------- ---------- 
ENSTTRP00000016424/1-259  QATFEYSFIP AEPMGGRPFG LVINLNYKDL NGNVFQDAVF NQTVTVIERE 
ENSP00000244763/1-286     QATFEYSFIP AEPMGGRPFG LVINLNYKDL NGNVFQDAVF NQTVTVIERE 
bmy_00862T0/1-286         QATFEYSFIP AEPMGGRPFG LVINLNYKDL NGNVFQDAVF NQTVTIIERE 
ENSBTAP00000008253/1-286  QATFEYSFIP AEPMGGRPFG LVINLNYKDL NGNVFQDAVF NQTVTIIERE 


                          201                                                250
BACU001643/1-114          ---------- ---------- ---------- ---------- ---------- 
ENSTTRP00000016424/1-259  DGLDGETXXX XXXXXXXXXX XXXXXXXXXX XXXRKRPIQK VETGTSSQSD 
ENSP00000244763/1-286     DGLDGETIFM YMFLAGLGLL VIVGLHQLLE SRKRKRPIQK VEMGTSSQND 
bmy_00862T0/1-286         DGLDGETIFM YMFLAGLGLL VVVGLHQLLE SRKRKRPIQK VETGTSSQSD 
ENSBTAP00000008253/1-286  DGLDGETIFM YMFLAGLGLL VVVGLHQLLE SRKRKRPIQK VEMGTSSQND 


                          251                                                300
BACU001643/1-114          ---------- ---------- ---------- ------ 
ENSTTRP00000016424/1-259  VDMSWIPQET LNQINKASPR RLPRKRAQKR SVGSDE 
ENSP00000244763/1-286     VDMSWIPQET LNQINKASPR RLPRKRAQKR SVGSDE 
bmy_00862T0/1-286         VDMSWIPQET LNQINKASPR RLPRKRAQKR SVGSDE 
ENSBTAP00000008253/1-286  VDMSWIPQET LNQINKASPR RLPRKRAQKR SVGSDE