KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:55 2014 Check: 00 .. Name: ENSTTRP00000007300/1-806 Len: 854 Check: 804 Weight: 1.00 Name: BACU002382/1-754 Len: 854 Check: 6296 Weight: 1.00 Name: bmy_06031T0/1-742 Len: 854 Check: 5560 Weight: 1.00 Name: ENSP00000343054/1-815 Len: 854 Check: 2552 Weight: 1.00 Name: ENSBTAP00000008305/1-815 Len: 854 Check: 1769 Weight: 1.00 // 1 50 ENSTTRP00000007300/1-806 MGSDKRVSRT ERSGRYGSII DRDDRDERES RSRRRDSDYR SSDD--RGDR BACU002382/1-754 ---------- ---------- ---------- ---------- ---------- bmy_06031T0/1-742 MGSDKRVSRT ERSGRYGSII DRDDRDERES RSRRRDSDYK RSSDDRRGDR ENSP00000343054/1-815 MGSDKRVSRT ERSGRYGSII DRDDRDERES RSRRRDSDYK RSSDDRRGDR ENSBTAP00000008305/1-815 MGSDKRVSRT ERSGRYGSII DRDDRDERES RSRRRDSDYK RSSDDRRGDR 51 100 ENSTTRP00000007300/1-806 YDDYRDYDXX XRERERRNSD RSEDGYHSDG DYGEHDYRHD ISDERESKTI BACU002382/1-754 ---------- ---------- ---------- ---------- ---------- bmy_06031T0/1-742 YDDYRDYDSP E--------- ---------- ---------- ---------- ENSP00000343054/1-815 YDDYRDYDSP ERERERRNSD RSEDGYHSDG DYGEHDYRHD ISDERESKTI ENSBTAP00000008305/1-815 YDDYRDYDSP ERERERRNSD RSEDGYHSDG DYGEHDYRHD ISDERESKTI 101 150 ENSTTRP00000007300/1-806 MLRGLPITIT ESDIREMMES FEGPQPADVR LMKRKTGVSR GFAFVEFYHL BACU002382/1-754 MLRGLPITIT ESDIREMMES FEGPQPADVR LMKRKTGVSR GFAFVEFYHL bmy_06031T0/1-742 ---------- ---IREMMES FEGPQPADVR LMKRKTGVSR GFAFVEFYHL ENSP00000343054/1-815 MLRGLPITIT ESDIREMMES FEGPQPADVR LMKRKTGVSR GFAFVEFYHL ENSBTAP00000008305/1-815 MLRGLPITIT ESDIREMMES FEGPQPADVR LMKRKTGVSR GFAFVEFYHL 151 200 ENSTTRP00000007300/1-806 QDATSWMEAN QKKLVIQGKH IAMHXXXXXX XXXXXXXXXC CLNNFRKRLK BACU002382/1-754 QDATSWMEAN QKKLVIQGKH IAMHYSNPRP KFEDWLCNKC CLNNFRKRLK bmy_06031T0/1-742 QDATSWMEAN QKKLVIQGKH IAMHYSNPRP KFEDWLCNKC CLNNFRKRLK ENSP00000343054/1-815 QDATSWMEAN QKKLVIQGKH IAMHYSNPRP KFEDWLCNKC CLNNFRKRLK ENSBTAP00000008305/1-815 QDATSWMEAN QKKLVIQGKH IAMHYSNPRP KFEDWLCNKC CLNNFRKRLK 201 250 ENSTTRP00000007300/1-806 CFRC-----D SEQEVPPGTT ESVQSVDYYC DTIILRNIAP HTVVDSIMTA BACU002382/1-754 CFRCGADKFD SEQEVPPGTT ESVQSVDYYC DTIILRNIAP HTVVDSIMTA bmy_06031T0/1-742 CFRCGADKFD SEQEVPPGTT ESVQSVDYYC DTIILRNIAP HTVVDSIMTA ENSP00000343054/1-815 CFRCGADKFD SEQEVPPGTT ESVQSVDYYC DTIILRNIAP HTVVDSIMTA ENSBTAP00000008305/1-815 CFRCGADKFD SEQEVPPGTT ESVQSVDYYC DTIILRNIAP HTVVDSIMTA 251 300 ENSTTRP00000007300/1-806 LSPYASLAVN NIRLIKDKQT QQNRGFAFVQ LSSAMDASQL LQILQSLHPP BACU002382/1-754 LSPYASLAVN NIRLIKDKQT QQNRGFAFVQ LSSAMDASQL LQILQSLHPP bmy_06031T0/1-742 LSPYASLAVN NIRLIKDKQT QQNRGFAFVQ LSSAMDASQL LQILQSLHPP ENSP00000343054/1-815 LSPYASLAVN NIRLIKDKQT QQNRGFAFVQ LSSAMDASQL LQILQSLHPP ENSBTAP00000008305/1-815 LSPYASLAVN NIRLIKDKQT QQNRGFAFVQ LSSAMDASQL LQILQSLHPP 301 350 ENSTTRP00000007300/1-806 LKIDGKTIGV DFAKSARKDL VLPDGNRVSA FSVASTAIAA AQWSSTQSQS BACU002382/1-754 LKIDGKTIGV DFAKSARKDL VLPDGNRVSA FSVASTAIAA AQWSSTQSQS bmy_06031T0/1-742 LKIDGKTIGV DFAKSARKDL VLPDGNRVSA FSVASTAIAA AQWSSTQSQS ENSP00000343054/1-815 LKIDGKTIGV DFAKSARKDL VLSDGNRVSA FSVASTAIAA AQWSSTQSQS ENSBTAP00000008305/1-815 LKIDGKTIGV DFAKSARKDL VLPDGNRVSA FSVASTAIAA AQWSSTQSQS 351 400 ENSTTRP00000007300/1-806 GEGGNVDYSY LQPGQDGYAQ YAQYSQDYQQ FYQQQAGGLE SDASSASGTA BACU002382/1-754 GEGGNVDYSY LQPGQDGYAQ YAQYSQDYQQ FYQQQAGGLE SDASSASGTA bmy_06031T0/1-742 GEGGNVDYSY LQPGQDGYAQ YAQYSQDYQQ FYQQQAGGLE SDASSASGTA ENSP00000343054/1-815 GEGGSVDYSY LQPGQDGYAQ YAQYSQDYQQ FYQQQAGGLE SDASSASGTA ENSBTAP00000008305/1-815 GEGGSVDYSY LQPGQDGYAQ YAQYSQDYQQ FYQQQAGGLE SDASSASGTA 401 450 ENSTTRP00000007300/1-806 VTTTSAAVVS QSPQLYNQTS NPPGSPTEEA QP--STSTQA PAASPTGVVP BACU002382/1-754 VTTTSAAVVS QSPQLYNQTS NPPGSPTEEA QPSTSTSTQA PAASPTGVVP bmy_06031T0/1-742 VTTTSAAVVS QSPQLYNQTS NPPGSPTEEA QPSTSTSTQA PAASPTGVVP ENSP00000343054/1-815 VTTTSAAVVS QSPQLYNQTS NPPGSPTEEA QPSTSTSTQA PAASPTGVVP ENSBTAP00000008305/1-815 VTTTSAAVVS QSPQLYNQTS NPPSSPTEEA QPSTSTSTQA PAASPTGVVP 451 500 ENSTTRP00000007300/1-806 GTKYAVPDTS TYQYDESSGY YYDPTTGLYY DPNSQYYYNS LTQQYLYWDG BACU002382/1-754 GTKYAVPDTS TYQYDESSGY YYDPTTGLYY DPNSQYYYNS LTQQYLYWDG bmy_06031T0/1-742 GTKYGKPN-- ---------- ----LMGLLT -----YYYNS LTQQYLYWDG ENSP00000343054/1-815 GTKYAVPDTS TYQYDESSGY YYDPTTGLYY DPNSQYYYNS LTQQYLYWDG ENSBTAP00000008305/1-815 GTKYAVPDTS TYQYDESSGY YYDPTTGLYY DPNSQYYYNS LTQQYLYWDG 501 550 ENSTTRP00000007300/1-806 EKETYVLAAE SNSHQQTGLP PAKEGKEKKE KPKSKTAQQI AKDMERWAKS BACU002382/1-754 EKETYVLAAE SNSHQQTGLP PAKEGKEKKE KPKSKTAQQI AKDMERWAKS bmy_06031T0/1-742 EKETYVLAAE SNSHQQTGLP PAKEGKEKKE KPKSKTAQQI AKDMERWAKS ENSP00000343054/1-815 EKETYVPAAE SSSHQQSGLP PAKEGKEKKE KPKSKTAQQI AKDMERWAKS ENSBTAP00000008305/1-815 EKETYMLAAE SNSHQQTGLP PAKEGKEKKE KPKSKTAQQI AKDMERWAKS 551 600 ENSTTRP00000007300/1-806 LNKQKENFKN SFQPVNSLRE EERRESAAAD AGFALFEKKG ALAERQQLIP BACU002382/1-754 LNKQKENFKN SFQPVNSLRE EERRESAAAD AGFALFEKKG ALAERQQLIP bmy_06031T0/1-742 LNKQKENFKN SFQPVNSLRE EERRESAAAD AGFALFEKKG ALAERQQLIP ENSP00000343054/1-815 LNKQKENFKN SFQPVNSLRE EERRESAAAD AGFALFEKKG ALAERQQLIP ENSBTAP00000008305/1-815 LNKQKENFKN SFQPVNSLRE EERRESAAAD AGFALFEKKG ALAERQQLIP 601 650 ENSTTRP00000007300/1-806 ELVRNGDEEN PLKRGLVAAY SGDSDNEEEL VERLESEEEK LADWKKMACL BACU002382/1-754 ELVRNGDEEN PLKRGLVAAY SGDSDNEEEL VERLESEEEK LADWKKMACL bmy_06031T0/1-742 ELVRNGDEEN PLKRGLVAAY SGDSDNEEEL VERLESEEEK LADWKKMACL ENSP00000343054/1-815 ELVRNGDEEN PLKRGLVAAY SGDSDNEEEL VERLESEEEK LADWKKMACL ENSBTAP00000008305/1-815 ELVRNGDEDN PLKRGLVAAY SGDSDNEEEL VERLESEEEK LADWKKMACL 651 700 ENSTTRP00000007300/1-806 LCRRQFPNRD ALVRHQQLSD LHKQNMDIYR RSRLSEQELE ALELREREMK BACU002382/1-754 LCRRQFPNRD ALVRHQQLSD LHKQNMDIYR RSRLSEQELE ALELREREMK bmy_06031T0/1-742 LCRRQFPNRD ALVRHQQLSD LHKQNMDIYR RSRLSEQELE ALELREREMK ENSP00000343054/1-815 LCRRQFPNKD ALVRHQQLSD LHKQNMDIYR RSRLSEQELE ALELREREMK ENSBTAP00000008305/1-815 LCRRQFPNKD ALVRHQQLSD LHKQNMDIYR RSRLSEQELE ALELREREMK 701 750 ENSTTRP00000007300/1-806 YRDRAAERRE KYGIPEPPEP KRKKQFDAGT VNYEQPTKDG IDHSNIGXXX BACU002382/1-754 YRDRAAERRE KYGIPEPPEP KRKKQFDAGT VNYEQPTKDG IDHSNIGNKM bmy_06031T0/1-742 YRDRAAERRE KYGIPEPPEP KRKKQFDAGT VNYEQPTKDG IDHSNIGNKM ENSP00000343054/1-815 YRDRAAERRE KYGIPEPPEP KRKKQFDAGT VNYEQPTKDG IDHSNIGNKM ENSBTAP00000008305/1-815 YRDRAAERRE KYGIPEPPEP KRKKQFDAGT VNYEQPTKDG IDHSNIGNKM 751 800 ENSTTRP00000007300/1-806 XXXXXXXXXX XXXXXXXXXX XXXXA----- -----QVRLK GA-GLGAKGS BACU002382/1-754 LQAMGWREGS GLGRKCQGIT APIEVSSGLQ AYPRDEMRLK HPEGLGPSGS bmy_06031T0/1-742 LQAMGWREGS GLGRKCQGIT APIEA----- -----QVRLK GA-GLGAKGS ENSP00000343054/1-815 LQAMGWREGS GLGRKCQGIT APIEA----- -----QVRLK GA-GLGAKGS ENSBTAP00000008305/1-815 LQAMGWREGS GLGRKCQGIT APIEA----- -----QVRLK GA-GLGAKGS 801 850 ENSTTRP00000007300/1-806 AY-------- -------GLS GADSYKDAV- ------RKAM FARFTEME-- BACU002382/1-754 CLLCSPPIFH APLKMSVGRN GCGTLLDFSG LLVSLGKTYL LLRAVSMSFV bmy_06031T0/1-742 AY-------- -------GLS GADSYKDAV- ------RKAM FARFTEME-- ENSP00000343054/1-815 AY-------- -------GLS GADSYKDAV- ------RKAM FARFTEME-- ENSBTAP00000008305/1-815 AY-------- -------GLS GADSYKDAV- ------RKAM FARFTEME-- 851 900 ENSTTRP00000007300/1-806 ---- BACU002382/1-754 INKP bmy_06031T0/1-742 ---- ENSP00000343054/1-815 ---- ENSBTAP00000008305/1-815 ----