KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:56 2014 Check: 00 .. Name: ENSP00000300134/1-847 Len: 961 Check: 178 Weight: 1.00 Name: ENSTTRP00000012398/1-847 Len: 961 Check: 3849 Weight: 1.00 Name: ENSBTAP00000008311/1-847 Len: 961 Check: 4105 Weight: 1.00 Name: bmy_03893T0/1-879 Len: 961 Check: 9576 Weight: 1.00 Name: BACU008149/1-875 Len: 961 Check: 3177 Weight: 1.00 // 1 50 ENSP00000300134/1-847 ---------- ---------- ---------- ---------- -------MSL ENSTTRP00000012398/1-847 ---------- ---------- ---------- ---------- -------MSL ENSBTAP00000008311/1-847 ---------- ---------- ---------- ---------- -------MSL bmy_03893T0/1-879 PLSLVCVVRA PGRDLGSRRS RKQRAGAATA YTEEEGRERI APSKPQIMSL BACU008149/1-875 ---------- ---------- ---------- ---------- -------MSL 51 100 ENSP00000300134/1-847 WGLVSKMPPE KVQRLYVDFP QHLRHLLGDW LESQPWEFLV GSDAFCCNLA ENSTTRP00000012398/1-847 WGLVSKMPPE KLQRLYVDFP QHLRHLLGDW LENQPWEFLV GSDAFCCNMA ENSBTAP00000008311/1-847 WGLVSKMPPE KLQRLYVDFP QHLRHLLGDW LENQPWEFLV GSDTFCCNMA bmy_03893T0/1-879 WGLVSKMPPE KLQRLYVDFP QHLRHLLGDW LENQPWEFLV GSDAFCCNMA BACU008149/1-875 WGLVSKMPPE KLQRLYVDFP QHLRHLLGDW LENQPWEFLV GSDAFCCNMA 101 150 ENSP00000300134/1-847 SALLSDTVQH LQASVGEQGE GSTILQHIST LESIYQRDPL KLVATFRQIL ENSTTRP00000012398/1-847 SALLSATVQR LQASAGEQGE GSTILQHIST LESIYQRDPL KLVATFRHIL ENSBTAP00000008311/1-847 SALLSATVQR LQASAGEQGE GNTILQHIST LETIYQRDPL KLVATCRHIL bmy_03893T0/1-879 SALLSATVQR LQASAGEQGE GSTILQHIST LESIYQRDPL KLVATFRHIL BACU008149/1-875 SALLSATVQR LQASAGEQGE GSTILQHIST LESIYQRDPL KLVATFRHIL 151 200 ENSP00000300134/1-847 QGEKKAVMEQ FRHLPMPFHW KQEELKFKTG LRRLQHRVGE IHLLREALQK ENSTTRP00000012398/1-847 QGEKKAIMEQ FRHLPMPFHW KQEELKFNTV LRRLQHRVGE TCLLRKALQP ENSBTAP00000008311/1-847 QGEKKAVMEQ FHHLPMSFHW KQEELKFNTV LRRLQHRAGE TRLLREALQP bmy_03893T0/1-879 QGEKKAIMEQ FRHLPMPFHW KQEELKFNTV LRRLQHR--- ---------- BACU008149/1-875 QGEKKAIMEQ FRHLPMPFHW KQEELKFNTV LRRLQHRVGE TCLLRKALQP 201 250 ENSP00000300134/1-847 GAEAGQVSLH SLIETPANGT GPSEALAMLL QETTGELEAA KALVLKRIQI ENSTTRP00000012398/1-847 GAEGGQVSLH SLIETPANGT GPSEXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000008311/1-847 GAEAGQVSLH SLIETPTNGT GPSEALVTLL QETVGELEAA QALVLKRIQI bmy_03893T0/1-879 ---------- ---------- ---------- ---------- -ALVLKRIQI BACU008149/1-875 GAEGGQVSLH SLIETPANGT GPSEALATFL QETVGELEAA QALVLKRIQI 251 300 ENSP00000300134/1-847 WKRQQQLAGN GAPFEESLAP LQERCESLVD IYSQLQQEVG AAGGELEPKT ENSTTRP00000012398/1-847 XXXXXXXXXX XXXXXXXXXX XXXXCESLVD IYSQLQQEVG AAGGELEPKT ENSBTAP00000008311/1-847 WKRQQQLAGN GAPFEESLAP LQERCESLVD IYSQLQQEVG AAGGELDPKT bmy_03893T0/1-879 WKRQQQLAGN GAPFEESLAP LQERCESLVD IYSQLQQEVG AAGGELEPKT BACU008149/1-875 WKRQQQLAGN GAPFEESLAP LQERCESLVD IYSQLQQEVG AAGGELEPKT 301 350 ENSP00000300134/1-847 RASLTGRLDE VLRTLVTSCF LVEKQPPQVL KTQTKFQAGV ---------- ENSTTRP00000012398/1-847 RAALISRLDE VLRTLITSSF LVEKQPPQVL KTQTKFQAGV ---------- ENSBTAP00000008311/1-847 RAALISRLDE VLRTLVTSSF LVEKQPPQVL KTQTKFQAGV ---------- bmy_03893T0/1-879 QAALISRLDE VLRTLITSSF LVEKQPPQVL KTQTKFQAGV ---------- BACU008149/1-875 QAALISRLDE VLRTLITSSF LVEKQPPQVL KTQTKFQAGV XXXXXXXXXX 351 400 ENSP00000300134/1-847 ---------- --------RF LLGLRFLGAP AKPPLVRADM VTEKQARELS ENSTTRP00000012398/1-847 ---------- --------RF LLGLRFLAAP AKPLMVRADM VTEKQARELS ENSBTAP00000008311/1-847 ---------- --------RF LLGLRFLGAP AKPPLVRADM VTEKQARELS bmy_03893T0/1-879 ---------- --------RF LLGLRFLAAP AKPLMVRADM VTEKQARELS BACU008149/1-875 XXXXXXXXXX XXXXXXXXXF LLGLRLLAAP AKPLMVRADM VTEKQARELS 401 450 ENSP00000300134/1-847 VPQGPGAGA- ---------- ---------- ---------- --------ES ENSTTRP00000012398/1-847 MPQGPGAGV- ---------- ---------- ---------- --------ES ENSBTAP00000008311/1-847 MPQGPGAGA- ---------- ---------- ---------- --------ES bmy_03893T0/1-879 MPQGPGAGAT QVGRWRLGAS SPGHSLVDSS SCHSWSSWDE PLSDLPGRES BACU008149/1-875 MPQGPGAGA- ---------- ---------- ---------- --------ES 451 500 ENSP00000300134/1-847 TGEIINNTVP LENSIPGNCC SALFKNLLLK KIKRCERKGT ESVTEEKCAV ENSTTRP00000012398/1-847 TGEIINNTVP LENSIPGNCC TALFKNLLLK KIKRCERKGT ESVTEEKCAV ENSBTAP00000008311/1-847 TGEIINNTVP LENSIPGNCC SALFKNLLLK KIKRCERKGT ESVTEEKCAV bmy_03893T0/1-879 TGEIINNTVS LENSIPGNCC SALFKNLLLK KIKRCERKGT ESVTEEKCAV BACU008149/1-875 TGEIINNTVS LENSIPGNCC SALFKNLLLK KIKRCERKGT ESVTEEKCAV 501 550 ENSP00000300134/1-847 LFSASFTLGP GKLPIQLQAL SLPLVVIVHG NQDNNAKATI LWDNAFSEMD ENSTTRP00000012398/1-847 LFSTSFTLSP NKLPIQLQAL SLPLVVIVHG NQDNNAKATI LWDNAFSEMD ENSBTAP00000008311/1-847 LFSTSLTLGP NKLPIQLQAL SLPLVVIVHG NQDNNAKATI LWDNAFSEMD bmy_03893T0/1-879 LFSTSFTLSP NKLPIQLQAL SLPLVVIVHG NQDNNAKATI LWDNAFSEMD BACU008149/1-875 LFSTSFTLSP NKLPIQLQAL SLPLVVIVHG NQDNNAKATI LWDNAFSEMD 551 600 ENSP00000300134/1-847 RVPFVVAERV PWEKMCETLN LKFMAEVGTN RGLLPEHFLF LAQKIFNDNS ENSTTRP00000012398/1-847 RVPFVVAERV PWEKMCETLN LKFMAEVGTN RGLLPEHFLF LAQKIFTDNS ENSBTAP00000008311/1-847 RVPFVVAERV PWEKMCETLN LKFMAEVGTN RGLLPEHFLF LAQKIFNDNS bmy_03893T0/1-879 RVPFVVAERV PWEKMCETLN LKFMAEVGTN RGLLPEHFLF LAQKIFTDNS BACU008149/1-875 RVPFVVAERV PWEKMCETLN LKFMAEVGTN RGLLPEHFLF LAQKIFTDNS 601 650 ENSP00000300134/1-847 LSMEAFQHRS VSWSQFNKEI LLGRGFTFWQ WFDGVLDLTK RCLRSYWSDR ENSTTRP00000012398/1-847 LSMEAFQHRS VSWSQFNKEI LLGRGFTFWQ WFDGVLDLTK RCLRSYWSDR ENSBTAP00000008311/1-847 LSIEAFQHRS VSWSQFNKEI LLGRGFTFWQ WFDGVLDLTK RCLRSYWSDR bmy_03893T0/1-879 LSMEAFQHRS VSWSQFNKEI LLGRGFTFWQ WFDGVLDLTK RCLRSYWSDR BACU008149/1-875 LSMEAFQHRS VSWSQFNKEI LLGRGFTFWQ WFDGVLDLTK RCLRSYWSDR 651 700 ENSP00000300134/1-847 LIIGFISKQY VTSLLLNEPD GTFLLRFSDS EIGGITIAHV IRGQDGSPQI ENSTTRP00000012398/1-847 LIIGFISKQY VTSLLLNEPD GTFLLRFSDS EIGGITIAHV IRGQDGSPQI ENSBTAP00000008311/1-847 LIIGFISKQY VTSLLLNEPD GTFLLRFSDS EIGGITIAHV IRGQDGSPQI bmy_03893T0/1-879 LIIGFISKQY VTSLLLNEPD GTFLLRFSDS EIGGITIAHV IRGQDGSPQI BACU008149/1-875 LIIGFISKQY VTSLLLNEPD GTFLLRFSDS EIGGITIAHV IRGQDGSPQI 701 750 ENSP00000300134/1-847 ENIQPFSAKD LSIRSLGDRI RDLAQLKNLY PKKPKDEAFR SHYKPEQMGK ENSTTRP00000012398/1-847 ENIQPFSAKD LSIRSLGDRI RDLAQLKNLY PKKPKDEAFR SHYKPEQMGK ENSBTAP00000008311/1-847 ENIQPFSAKD LSIRSLGDRI RDLAQLKNLY PKKPKDEAFR SHYKPEQMGK bmy_03893T0/1-879 ENIQPFSAKD LSIRSLGDRI RDLAQLRNLY PKKPKDEAFR SHYKPEQMGK BACU008149/1-875 ENIQPFSAKD LSIRSLGDRI RDLAQLRNLY PKKPKDEAFR SHYKPEQMGK 751 800 ENSP00000300134/1-847 DGRGYVPATI KMTVERDQPL PTPELQMPTM VPSYDLGMAP DSSMSMQLGP ENSTTRP00000012398/1-847 DGRGYVPATI KMTVERDQPL TTPEPQTPTM MPSYDLGMVP DCSMNMQLGP ENSBTAP00000008311/1-847 DGRGYVPATI KMTVERDQPL PTPEPQMPTM VPSYDLGMAP DSSMNLQLGP bmy_03893T0/1-879 DGRGYVPATI KMTVERDQPL TTPEPQMPTM MPSYDLGMVP DCSMNMQLSP BACU008149/1-875 DGRGYVPATI KMTVERDQPL TTPEPQMPTM MPSYDLGMVP DCSVNMQLGP 801 850 ENSP00000300134/1-847 DMVPQVYPPH SHSIPPYQGL SPEESVNVLS AFQEPHLQMP PSLGQMSLPF ENSTTRP00000012398/1-847 DMAPQGYPPR SHSIPSYPAL PREESVNVLP AFQEPHLQMP PSLSQMSLPF ENSBTAP00000008311/1-847 DMVPQVYPPR SHSIPSYPAL PREESVNMLP AFQEPHLPMP PNLSQMSLPF bmy_03893T0/1-879 DMVPQVYPPR SHSIPSYPAL PREESVNVLP AFQERHLQMP PNLSQMSLPF BACU008149/1-875 DMVPQVFPPR SHSIPSYPAL PREESVNVLP AFQEPHLQMP ANLSQMSLPF 851 900 ENSP00000300134/1-847 DQPHPQGLLP CQPQEHAVSS PDPLLCSDVT MVEDSCLSQP VTAFPQGTWI ENSTTRP00000012398/1-847 DQPHPQGLLP CQPQEHAGSS SKPLLCSDVT MAEDSCLTQP VGGFPQGTWV ENSBTAP00000008311/1-847 DQPHPQGLLP CPPQDHAVSS PEPLLCSDVT MAEDSCLNQP VGGFPQGTWV bmy_03893T0/1-879 DQPHPQGLLP CQPQEHAVSS PEPLLCSDVT MAEESCLRQS VGGFPQGTWV BACU008149/1-875 DQPHPQGLLP CQPQEHAVSS PESLLCSDVT MAEESCLRQS VGGFPQGTWV 901 950 ENSP00000300134/1-847 GEDIFPPLLP PTEQDLTKLL LEGQGESGGG SLGAQPLLQP SHYGQSGISM ENSTTRP00000012398/1-847 REDMLPPLLP PTEQDLTKLL LEGQGESEGG SLGAQPLLQP SCYGQSGISM ENSBTAP00000008311/1-847 REDMFPPLLP PTEQDLTKLL LEGQGESGGG SLGPQPLLQP SPYGQSGISM bmy_03893T0/1-879 REDMLPPLLP PTEQDLTKLL LEGQGGSEGG SLGAQPLLQP SRYGQSGISV BACU008149/1-875 REDMLPPLLP PTEQDLTKLL LEGQGGSEGG SLGAQPLLQP SRYGQSGISM 951 1000 ENSP00000300134/1-847 SHMDLRANPS W ENSTTRP00000012398/1-847 SHLDIRANPT W ENSBTAP00000008311/1-847 SHLDLRANPS W bmy_03893T0/1-879 SHLDLRANPT W BACU008149/1-875 SHLDLRANPT W