KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:34:57 2014 Check: 00 .. Name: ENSP00000250693/1-327 Len: 327 Check: 3305 Weight: 1.00 Name: ENSBTAP00000008325/1-326 Len: 327 Check: 1182 Weight: 1.00 Name: bmy_03654T0/1-276 Len: 327 Check: 4042 Weight: 1.00 Name: ENSTTRP00000015773/1-326 Len: 327 Check: 2481 Weight: 1.00 // 1 50 ENSP00000250693/1-327 MQMPAMMSLL LVSVGLMEAL QAQSHPITRR DLFSQEIQLD MALASFDDQY ENSBTAP00000008325/1-326 MQSPAVMSLL LVSMGLMEAL QAQSHPVIRR DLLSREMPLD MALASFDDQY bmy_03654T0/1-276 ---------- ---------- ---------- ------MPLD MALASFDDQY ENSTTRP00000015773/1-326 MQTXXXXXXX XXXXXXXXXX XAQSHPITRR DLFSREMPLD MALASFDDQY 51 100 ENSP00000250693/1-327 AGCAAAMTAA LPDLNHTEFQ ANQVYADSWT LASSQWQERQ ARWPEWSLSP ENSBTAP00000008325/1-326 AGCATAMAAA LPELNRTEFQ ANKVYADGWV QASSQWRERQ AWGPEWGVSP bmy_03654T0/1-276 AGCAAAMAAA LPDLNRTEFQ ANKVYADVWA QASSQWQERQ AWGLKWGLSP ENSTTRP00000015773/1-326 AGCAAAMAAA LPDLNRTEFQ ANKVYADVWA QASSQWQERQ AWGSKWGLSP 101 150 ENSP00000250693/1-327 TRPSPPPLGF RDEHGVALLA YTANSPLHKE FNAAVREAGR SRAHYLHHFS ENSBTAP00000008325/1-326 TRL-LAPLGF REEHGVALLA YTANSPLHKE FNAAVREAGR SRAHYLQHFS bmy_03654T0/1-276 TRL-PPPTGF REEHGVALLA YTANSPLHKE FNAAVREAGR SRAHYLHHFS ENSTTRP00000015773/1-326 TRL-SPPAGF REEHGVALLA YTANSPLHKE FNAAVREAGR SRLHYLHHFS 151 200 ENSP00000250693/1-327 FKTLHFLLTE ALQLLGSGQR PPRCHQVFRG VHGLRFRPAG PRATVRLGGF ENSBTAP00000008325/1-326 FKTLHFLLTE ALQLLSSGQR PPQCHQVFRG VQGLRFRPAG PGATVRLGGF bmy_03654T0/1-276 FKTLHFLLTE ALQLLGRGQR PPQCRQVFRG VQGLRFRPAG PGATVRLGGF ENSTTRP00000015773/1-326 FKTLHFLLTE ALQLLGRGQR PPQCRQVFRG VQGLRFRPAG PGATVRLGGF 201 250 ENSP00000250693/1-327 ASASLKHVAA QQFGEDTFFG IWTCLGAPIK GYSFFPGEEE VLIPPFETFQ ENSBTAP00000008325/1-326 ASASLQDAAA QHFGEDTFFG IWTCLGAPIK GYSFFPGEEE VLIPPFETFQ bmy_03654T0/1-276 ASASLQNVAA QQFGEDTFFG IWTCLGAPIK GYSFFPGEEE VLIPPFETFQ ENSTTRP00000015773/1-326 ASASLQNVAA QQFGEDTFFG IWTCLGAPIK GYSFFPGEEE VLIPPFETFQ 251 300 ENSP00000250693/1-327 VINASRLAQG PARIYLRALG KHSTYNCEYI KDKKCKSGPC HLDNSAMGQS ENSBTAP00000008325/1-326 VINASRPAQG PSRIYLRAVG KRSTYNCEYI KDKQCKSERC RLGNSAVGQS bmy_03654T0/1-276 VINASRPAQG PARIYLRALG KRSTYNCEYI K--------- -----AVGQG ENSTTRP00000015773/1-326 VINASRPAQG PTRIYLRALG QRSMYNCEYI KDKQCKSGPC RLDNSAMGQG 301 350 ENSP00000250693/1-327 PLSAVWSLLL LLWFLVVRAF PDGPGLL ENSBTAP00000008325/1-326 PLSAVWSLLL LLWFLVGEVF PESPGFL bmy_03654T0/1-276 PLSAVWSLLL LLWFLAVEAF PESPGLL ENSTTRP00000015773/1-326 PLSAVWSLLL LLWFLVGEAF PESPGLL