KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 16:35:00 2014 Check: 00 ..
Name: ENSP00000354553/1-406 Len: 406 Check: 8179 Weight: 1.00
Name: ENSBTAP00000008351/1-404 Len: 406 Check: 6572 Weight: 1.00
Name: bmy_03412T0/1-392 Len: 406 Check: 7907 Weight: 1.00
Name: ENSTTRP00000001322/1-395 Len: 406 Check: 1843 Weight: 1.00
//
1 50
ENSP00000354553/1-406 MRGSVECTWG WGHCAPSPLL LWTLLLFAAP FGLLGEKTRQ VSLEVIPNWL
ENSBTAP00000008351/1-404 MSGYEKPSRG WGFCALSPVL L--SLLMAAP LGLLGEETRQ VSLKVISNRL
bmy_03412T0/1-392 MRS------- -------PVL LLSLLLTAAP FGLLGEETRQ VSLKVISDWL
ENSTTRP00000001322/1-395 VRSYED---- -------RVL LLSLLLTAAP FGLLGEETRQ VSLKVISDWL
51 100
ENSP00000354553/1-406 GPLQNLLHIR AVGTNSTLHY VWSSLGPLAV VMVATNTPHS TLSVNWSLLL
ENSBTAP00000008351/1-404 DFSQNLLHIR AVGTNSTLHY VWSSLGPPAV LLVATNTPNS TLSVNWSLLL
bmy_03412T0/1-392 DPSQNLLHIQ AVGATSTLHY VWSSLGPPAV LLVATNTPNS TLRVNWTLLI
ENSTTRP00000001322/1-395 DTSQNLLHIW AVGATSTLHY VWSSLGPPAV LLVATNTPNS TLSVNWSLLI
101 150
ENSP00000354553/1-406 SPEPDGGLMV LPKDSIQFSS ALVFTRLLEF DSTNVSDTAA KPLGRPYPPY
ENSBTAP00000008351/1-404 SSDPDGGLMV LPEESIQFSS ALVFTRLFEF DSTNMSDAAS RPLGKSYPPY
bmy_03412T0/1-392 SSEPDGGLMV LPKESIQFSS ALVFTRLFEF XSTNTSDAAA KPPGKSYPPY
ENSTTRP00000001322/1-395 SSEPDGGLVV LPKESIQFSS AIVFTRLFEF DSTDTADAAA KPPGKSYPPY
151 200
ENSP00000354553/1-406 SLADFSWNNI TDSLDPATLS ATFQGHPMND PTRTFANGSL AFRVQAFSRS
ENSBTAP00000008351/1-404 SLANFSWNNI TDSLDPATLS ATFRGHPIRD PTGAFTNGSL AFRVQAFSTS
bmy_03412T0/1-392 SLADFSWDNI TDSLDPATLS ATFRGHPIHD PTGAFANGSL AFRVQAFSRS
ENSTTRP00000001322/1-395 SLANFSWANI TDSLDPATLS ATFRGHPIHD PTGAFASGSL AFRVQAFSGS
201 250
ENSP00000354553/1-406 SRPAQPPRLL HTADTCQLEV ALIGASPRGN RSLFGLEVAT LGQGPDCPSM
ENSBTAP00000008351/1-404 GRPAQPPRLL HSADTCQLEV ALVGASPRGN RSLFGLEVAT LGQGPGCPSM
bmy_03412T0/1-392 GRPAQPPCLL HTADTCQLEV DLVGASPRGN HSLFGLEVAT LGHGPDCPSV
ENSTTRP00000001322/1-395 GRPAQPPRLL HTADTCQLEV DLVGASPRGN HSLFGLEVAT LGHGPDCPSV
251 300
ENSP00000354553/1-406 QEQHSIDDEY APAVFQLDQL LWGSLPSGFA QWRPVAYSQK PGGRESALPC
ENSBTAP00000008351/1-404 QEQHSIDDEY TPAVFQLDQL LWGSLPSGFM QWRPVAFSQK RGSRDSAMPC
bmy_03412T0/1-392 QEQHSIDDEY APAVFQLDQL LWGSLPSGFM QWRPVAFSQK QGGRESAMPC
ENSTTRP00000001322/1-395 QEQHSIDDEY APAVFQLDQL LWGSLPSGFM QWRPVAFSQK QGGRESAMPC
301 350
ENSP00000354553/1-406 QASPLHPALA YSLPQSPIVR AFFGSQNNFC AFNLTFGAST GPGYWDQHYL
ENSBTAP00000008351/1-404 QSSPLHPTLA YLLPQSPIVR AFFKTQDHSC AFNLTFGAST GPGYWDQHYL
bmy_03412T0/1-392 QASPLYPTLA YLLPQSPIVR AFFGSQNNFC AFNLTFGAST GPGYWDQHYL
ENSTTRP00000001322/1-395 QASPLYPTLA YLLPQSPIVR AFFGSQNNFC AFNLTFGTST GPGYWDKHYL
351 400
ENSP00000354553/1-406 SWSMLLGVGF PPVDGLSPLV LGIMAVALGA PGLMLLGGGL VLLLHHKKYS
ENSBTAP00000008351/1-404 SWSVLLGVGT PPVDALSPLV LGIMAVALGA PALMLLAGGL FLLLGRKRDS
bmy_03412T0/1-392 SWSMLLGVGT PPVDALSSLV LGIVAVALGA PALMLLAGGV FLLLGHKWYS
ENSTTRP00000001322/1-395 SWSMLLGVGT PPVDALSSLV LGIMAVALGA PALVLLAGGV FLLLGHKRYS
401 450
ENSP00000354553/1-406 EYQSIN
ENSBTAP00000008351/1-404 EYQSIN
bmy_03412T0/1-392 EYQPIN
ENSTTRP00000001322/1-395 EYQPIN