KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:04 2014 Check: 00 .. Name: ENSTTRP00000005802/1-670 Len: 702 Check: 2229 Weight: 1.00 Name: ENSP00000259808/1-671 Len: 702 Check: 5648 Weight: 1.00 Name: ENSBTAP00000008367/1-665 Len: 702 Check: 1289 Weight: 1.00 Name: bmy_21681T0/1-664 Len: 702 Check: 3989 Weight: 1.00 Name: BACU005105/1-695 Len: 702 Check: 953 Weight: 1.00 // 1 50 ENSTTRP00000005802/1-670 RKADMSLDDI RMSSTEFLKQ EDLDSGGFGK VSLCLHSSHE LVVLKKVYTG ENSP00000259808/1-671 MQPDMSLNVI KMKSSDFLES AELDSGGFGK VSLCFHRTQG LMIMKTVYKG ENSBTAP00000008367/1-665 ----MSLDDI KMSSTDFLEQ ADLDSGGFGK VCLCLHRSHG LVILKKVYTG bmy_21681T0/1-664 ----MSLDDI KMNSADFLQQ KELDDGGFGK ASLCLHRSHG LVVLKKVYTG BACU005105/1-695 ----MSLDDI KMNSADFLQQ KDLDGGGFGK VSLCLHRSHG LVVLKKVYTG 51 100 ENSTTRP00000005802/1-670 PKRTXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000259808/1-671 PNCIEHNEAL LEEAKMMNRL RHSRVVKLLG VIIEEGKYSL VMEYMEKGNL ENSBTAP00000008367/1-665 PKRTEYNEAL LEEGRMMHRL RHRRVVKLLG VIMEEGSYSL VMEYMEQGDL bmy_21681T0/1-664 PRRAEYNEAL LEEGRMMHRL RHSRVVKLLG VIMEDGNYSL VMEYMEKGDL BACU005105/1-695 PKRAEYSEAL LEEGRVMHRL QHSRVVQLLG VIMEDGNYSL VMEYLEKGDL 101 150 ENSTTRP00000005802/1-670 XXXXXXXXXX XXXXXXXXXX XXXXXXXYLH GEGVIHKDLK PENILVDGDF ENSP00000259808/1-671 MHVLKAEMST PLSVKGRIIL EIIEGMCYLH GKGVIHKDLK PENILVDNDF ENSBTAP00000008367/1-665 MRVLKAQVSI PLSVKGRIIM ETIEGMRYLH GEGVIHKDLK PENILVDSDF bmy_21681T0/1-664 MHVLKAQISI PLSVKGRIIM ETIEGMCYLH REGVIHKDLK PENILVDGDF BACU005105/1-695 MHVLKAQISI PLSVKGRIIM ETIEGMCYLH REGVIHKDLK PENILMDGDF 151 200 ENSTTRP00000005802/1-670 HIKIADLGLA SLKTWSELMK EELTAQRR-G NSTTKNGGTL HYMAPEHLND ENSP00000259808/1-671 HIKIADLGLA SFKMWSKLNN EEHNELREVD GTAKKNGGTL YYMAPEHLND ENSBTAP00000008367/1-665 HIKIADLGVA SFKTWSKLTK EEHNEQRKAG GSAGKSGGTL HYMAPEHLND bmy_21681T0/1-664 HIKIADLGFA SLKTWSELMR EELAAQRR-G SGTTKDGGSL HYTAPEHLND BACU005105/1-695 HIKIADLGFA SLKTWSELMR EELAAQRR-G NSTTKDSGSL HYTAPEHLND 201 250 ENSTTRP00000005802/1-670 VSSRPSEKSD VFSFAIVLWA VFANKEPYEN AVCEQQLIMR IKSGSRPDME ENSP00000259808/1-671 VNAKPTEKSD VYSFAVVLWA IFANKEPYEN AICEQQLIMC IKSGNRPDVD ENSBTAP00000008367/1-665 VNSRPSEKSD VFSFAIVLWA IFANKEPYEN AICEQQLILC IKSGNRPDVE bmy_21681T0/1-664 VSSRPSEKSD VFSFAIVLWA VFANKEPYEN AVCEQQLMMR IRSGNRPDVE BACU005105/1-695 VSSRPSEKSD VFSFAIVLWA VFANKEPYEN AICEQQLIMR VKSGDRPDVE 251 300 ENSTTRP00000005802/1-670 DITGHCPREA VSIMEQCWAV NPEDRPTFAG IEEKFRPFYL NQLEEHVEED ENSP00000259808/1-671 DITEYCPREI ISLMKLCWEA NPEARPTFPG IEEKFRPFYL SQLEESVEED ENSBTAP00000008367/1-665 DIIEFCPREV IDIMRQCWEV NPDNRPTFAG IEEKFRPFYS NQLEDYVEED bmy_21681T0/1-664 DMAEHCPREV ISIMKQCWAA NPEDRPAFAG IEEKFRPFYL NQLEEHVEED BACU005105/1-695 DLAEHCPREA ISIMKQCWAV HPDDRPTFAG IEEKFKPFYL NQLEEHVEED 301 350 ENSTTRP00000005802/1-670 VKSLKK---- ----EYLGQN EIVKRM---- ------KSLQ I-GCVAV--- ENSP00000259808/1-671 VKSLKK---- ----EYSNEN AVVKRM---- ------QSLQ L-DCVAV--- ENSBTAP00000008367/1-665 VKSLKK---- ----EFPGQN EIVKRM---- ------KSLQ I-DCVAI--- bmy_21681T0/1-664 VKSLKK---- ----EYPGQN EIVKRM---- ------KSLQ I-DCIAI--- BACU005105/1-695 VKSLKAGTTT YYLCNSQEEN HLVNAFYLFS EFSVCYSKVQ IHDCAQVFTS 351 400 ENSTTRP00000005802/1-670 --------SP SRSNSXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000259808/1-671 --------PS SRSNSATEQP GSLHSSQGLG MGPVEESWFA PSLEHPQEEN ENSBTAP00000008367/1-665 --------AP SRSNSATEQP SSLHSSQGFG MGPVEESWFA PAPDHQPEEN bmy_21681T0/1-664 --------SP SRSNSATEQP GSLHSSRGFG PGPVEDSWFA PAPEQQQQ-- BACU005105/1-695 SCFMKLFPTP IHFVSATEQP SSLHSSRGFG LGPVEDSWFA PAPEQQQQ-- 401 450 ENSTTRP00000005802/1-670 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000259808/1-671 EPSLQSKLQD EANYHLYGSR MDRQTKQQPR QNVAYNREEE RRRRVSHDPF ENSBTAP00000008367/1-665 DFLLHSKLQE EANYHLYGSR MDRRTKEQPR PNMAYSSEEE RRRRVSHDPF bmy_21681T0/1-664 DLRLHSKLQE EANYHLYGSR MDGQTGGQPG RNVADSRQEE RRRRVSHDPF BACU005105/1-695 DLRLHSKLQE EANYHLYGSR MDGHTGRQPG RNVADSRQEE RRRRVSHDPF 451 500 ENSTTRP00000005802/1-670 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000259808/1-671 AQQRPYENFQ NTEGKGTAYS SAASHGNAVH QPSGLTSQPQ VLYQNNGLYS ENSBTAP00000008367/1-665 AQQRPYENAQ SPGIKGLAYP GVMSHTSAAQ QPAGLSSQPQ SPYWRDGSFH bmy_21681T0/1-664 AQQRPYDNAQ NPGLKGLAYS GAASHGNAVQ QPTGLTSPPQ LLSWRNGLCT BACU005105/1-695 AQQRPYENAQ NPGLKGLAYS GAASHGNAVQ QPTGLTSQPQ LLSWRNGLCT 501 550 ENSTTRP00000005802/1-670 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000259808/1-671 SHGFGTRPLD PGTAGPRVWY RPIPSHMPSL HNIPVPETNY LGNTPTMPFS ENSBTAP00000008367/1-665 PL--GVRPLD LGTMSPRVWY GPNPGHMPSL YKTPVPETNL LGNTPTIPFT bmy_21681T0/1-664 PLGFGASPVD LRTAGPGVWY GPNPGHMPSL YKTPVPETNL LGNTPTIPFS BACU005105/1-695 PLGFGASPVD LRTAGPGVWY GPNPGHMPSL YKTPVPETNL LGNTPTIPFS 551 600 ENSTTRP00000005802/1-670 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000259808/1-671 SLPPTDESIK YTIYNSTGIQ IGAYNYMEIG GTSSSLLDST NTNFKEEPAA ENSBTAP00000008367/1-665 SLPSRDESSK YTIHSSSGIQ IGDSNYMEIG GMSSSVLDST YMNLKEEPAS bmy_21681T0/1-664 SLPSRDEPLK LSIYNSSGVQ IGNSNYMEIG GTSSLVLDST YMNLKEDPAS BACU005105/1-695 SLPSRDESLK YSICNSSGIQ IGNNNYMEIG GMSSVVLDST HMNLKEGPAS 601 650 ENSTTRP00000005802/1-670 XXXXXXXNTT SLTDKHLDPV RENLGRQWKD CARKLGFSQS QIDEIDHDYE ENSP00000259808/1-671 KYQAIFDNTT SLTDKHLDPI RENLGKHWKN CARKLGFTQS QIDEIDHDYE ENSBTAP00000008367/1-665 KYQAIFDNTT SLTDKHLDPV RENLGRHWKN CARKLGFSES QIDEIDHDYE bmy_21681T0/1-664 KYQDIFDNTT SLTDKHLDPV RENLGKHWKN FARKLGFSQS QIDEIDHDYE BACU005105/1-695 KYQDIFDNTT SLTDRHLDPV RENLGKHWKN FARKLGFSQS QIDEIDHDYE 651 700 ENSTTRP00000005802/1-670 RDGLKEKVYQ MLQKWLMREG SKGATVGKLA FALYQCSRL- DLLSHLTHSS ENSP00000259808/1-671 RDGLKEKVYQ MLQKWVMREG IKGATVGKLA QALHQCSRI- DLLSSLIYVS ENSBTAP00000008367/1-665 RDGLKEKVYQ MLQKWLMRAG SKGATVGKLA CALYLCSRI- DLVNCLIRIS bmy_21681T0/1-664 RDGLKEKVYQ MLQKWLMREG SKGATVGKLA CALYQCSRV- DLLNCLIRIS BACU005105/1-695 RDGLKEKVYQ MLQKWLMREG SKGATVGKLA CALYQCSRVX XXXNCLRCVS 701 750 ENSTTRP00000005802/1-670 QN ENSP00000259808/1-671 QN ENSBTAP00000008367/1-665 QS bmy_21681T0/1-664 HN BACU005105/1-695 QN