KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:05 2014 Check: 00 .. Name: ENSP00000373485/1-658 Len: 731 Check: 3027 Weight: 1.00 Name: ENSBTAP00000008380/1-710 Len: 731 Check: 7080 Weight: 1.00 Name: ENSTTRP00000008771/1-617 Len: 731 Check: 9949 Weight: 1.00 Name: bmy_05250T0/1-709 Len: 731 Check: 8186 Weight: 1.00 Name: BACU018115/1-711 Len: 731 Check: 145 Weight: 1.00 // 1 50 ENSP00000373485/1-658 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008380/1-710 RKCRPAWFYG FLVRAHLRPL GVSIDDSLFT ETKNTQKRKL SQKRKTLLSG ENSTTRP00000008771/1-617 ---------- ---------- ---------- ---------- ---------- bmy_05250T0/1-709 ---------- ------MKSV NIVNNYTSIR KKKKDYEECE SQ------SC BACU018115/1-711 RLCHPPLPSL SLCRAHLRPL GVIVDDSFLT EAKNTQKRKL SQKRKTLLSC 51 100 ENSP00000373485/1-658 ---MGGHLSP WPTYTSGQTI LQNRKPCSDD YRKRVG---- ---------- ENSBTAP00000008380/1-710 SFSIGGHLSP WPRYISDQTI LHNRKPCSDD YRKRAG---- ---------- ENSTTRP00000008771/1-617 ---IGGHLSP RPTYISDQTI LHNRKPCSDD YRKRVG---- ---------- bmy_05250T0/1-709 PFSIGGHLSP RPTYLSDQTI LHNRKPCSDD YRKRVGPRAQ GPGGVSITSQ BACU018115/1-711 PFSIGGHLSP RPTYISDQTI LHNRKPCSDD YRKRVG---- ---------- 101 150 ENSP00000373485/1-658 ------SCQQ HPFRTAKPQY LEELENYLRK ELLLLDLGTD STQELRLQPY ENSBTAP00000008380/1-710 -------SLQ QPLGTTKPRY LEQLENYLRK ELLLLDLSTD SAQELRLQPY ENSTTRP00000008771/1-617 ------SWQQ QPLGTTKPRY LEQLENYLHK ELLLLDLGTD SAQELRLQPY bmy_05250T0/1-709 STTPCSSWQQ QPLGTTKPRY LEQLENYLRK ELLLLDLGTD SAQELRLQPY BACU018115/1-711 ------SWQQ QPLGTTKPRY LEQLENYLRK ELLLLDLGTD SAQELRLQPY 151 200 ENSP00000373485/1-658 REIFEFFIED FKTYKPLLSS IKNAYEGMLA HQREKIRALE PLKAKLVTVN ENSBTAP00000008380/1-710 REIFEFFIED FKTYKPLLSS IKNAYEVMLA HQREKIRALE PLKAKLITVN ENSTTRP00000008771/1-617 REIFEFFIED FKTYKPLLSS IKD------- -QREKIRALE PLKAKLVTVN bmy_05250T0/1-709 REIFEFFIED FKTYKPLLSS IKNAYEVMLA HQREKIRALE PLKAKLVTVN BACU018115/1-711 REIFEFFIED FKTYKPLLSS IKNAYEVMLA HQREKIRALE PLKAKLVTVN 201 250 ENSP00000373485/1-658 EDCNERILAM RAEEKYEISL LKKEKMNLLK LIDKKNEEKI SLQSEVTKLR ENSBTAP00000008380/1-710 ENCNERILAM RAEERDEISM LKKEKMNLLK LIDKKNEEKI SLQTEVTKLR ENSTTRP00000008771/1-617 EDCNERILAM RAKERDEISM LKKEKMNLLK LIDKKN-EKI SLQSEVTKLR bmy_05250T0/1-709 EDCNERILAL RAKERYEISM LKKEKMNLLK LIDKKNEEKI SLQSEVTKLR BACU018115/1-711 EDCNERILAM RAKERYEISM LKKEKMNLLK LIDKKNEEKI SLQSEVTKLR 251 300 ENSP00000373485/1-658 KNLAEEYLHY LSERDACKIL IADLNELRYQ REDMSLAQSP GIWGEDPVKL ENSBTAP00000008380/1-710 KNLAEEYLHY LSERDARKIL IADLNELRYQ REDMSLAQSP GVWGEDPVKL ENSTTRP00000008771/1-617 KNLAEEYLRY LSEQDARKIL IADLNELRYQ REDMSPAQSP GVWEEDPVKL bmy_05250T0/1-709 KNLAEEYLRY LSERDARKIL IADLNELRYQ REDMSLAQSP GVWGEDPVKL BACU018115/1-711 KNLAEEYLRY LSERDARKIL IADLNELRYQ REDMSLAQSP GVWGEDPVKL 301 350 ENSP00000373485/1-658 TLALKMTRQD LTRTQMELNN MKANFGDVVP RRDFEMQEKT NKDLQEQLDT ENSBTAP00000008380/1-710 TVALKMARQD LTRTQMELNT MKANFGDVVP RRDFEMQEKT LKELQEQLES ENSTTRP00000008771/1-617 TVALKMARQ- LTRRQMELNT MKANFGDVVP RRDFEMQEKT LKDLQEQLDS bmy_05250T0/1-709 TMALKMARQD LTRTQMELNT MKANFGDVVP RRDFEMQEKT LKDLQEQLDS BACU018115/1-711 TMALKMARQD LTRTQMELNT MKANFGDVVP RRDFEMQEKT LKDLQEQLDS 351 400 ENSP00000373485/1-658 LRASYEEVRK EHEILMQLHM STLKERDQFF SELQEIQRTS TPRPDWTKCK ENSBTAP00000008380/1-710 LRDDYEEVRK EHEMLLQLHM STLKERDQFY SELQEIQRTS TPRPDWSKCE ENSTTRP00000008771/1-617 LRDDYEEFCK EHKMLLQLH- -TLKEQDQFY SELQEIQRTA IPRPDWSKCE bmy_05250T0/1-709 LRDDYEEVRK EHEMLLQLHM STLKERDQFY SELQEIQRTS TPRPDWSKCE BACU018115/1-711 LRDDYEEVRK EHEMLLQLHM STLKERDQFY SELQEIQRTS TPRPDWSKCE 401 450 ENSP00000373485/1-658 DVVAGGPERW QMLAEGKNSD QLVDVLLEEI GSGLLREKDF FPGLGYGEAI ENSBTAP00000008380/1-710 DMVAGGRDRW HMLAEGKNSD QLVDVLLEEI GEGLLREKDF FPGLGYGESI ENSTTRP00000008771/1-617 DVVAGGRDRW QMLAEGKNSD QLVDVLL-EI GEGLLQEKDF FPGLGYGESI bmy_05250T0/1-709 DVVAGGRDRW KMLAEGRNSD QLVDVLLEEI GEGLLREKDF FPGLGYGESI BACU018115/1-711 DVVAGGRDRW QMLAEGKNSD QLVDVLLEEI GEGLLREKDF FPGLGYGESI 451 500 ENSP00000373485/1-658 PAFLRFDGLV ENKKPSKKDV VNLLKDAWKE RLAEEQKETF PDFFFNFLEH ENSBTAP00000008380/1-710 PPFLRFDGIV ENKKPTKKEV VKLLKDAWKE RITEEQKEKF PDFFFSFLER ENSTTRP00000008771/1-617 PPFLWFDGVM QNKKPTKKDV VNLLKDAWKE RITEEQ---- ---------- bmy_05250T0/1-709 PPFLRFDGVV ENKKPTKKDV VNLLKDAWKE RITEEQKEKF PDFFFNFLER BACU018115/1-711 PPFLRFDGVV ENKKPTKKDV VNLLKDAWKE RITEEQKEKF PDFFFNFLER 501 550 ENSP00000373485/1-658 RFGPSDAMAW AYTIFENIKI FHSNEVMSQF YAVLMGKRSE NVYVTQKETV ENSBTAP00000008380/1-710 HFGPGDAMAW AYTIFEYIKL FHTNEVMSQF YAVLMGKRKE SVYIKQKQTI ENSTTRP00000008771/1-617 --------AW XXFFYK---- LHSNEVMSQF YAI-MGKRKE SVYIKQKETI bmy_05250T0/1-709 RFGPGDAMAW AYTIFEYTKL FHSNEVMSQF YAVLMGKRKE SVYIKQKETI BACU018115/1-711 RFGPGDAMAW AYTIFEYTKL FHSSEVMSQF YAVLMGKRKE SVYIKQKETI 551 600 ENSP00000373485/1-658 AQLLKEMTNA DSQNEGLLTM EQFNTVLKST FPLKTEEQIQ ELMEAGGWHP ENSBTAP00000008380/1-710 AQLLKEMTNV DSQNEGLLTM EQLSTVLKST FPLKKDERIQ ELMEAGGWHP ENSTTRP00000008771/1-617 AQLLKEMTSA DSQNEGLLTM EQLSTALKST FPFKKDERIQ ELMESGGWHP bmy_05250T0/1-709 AQLLKEMTNA DSQNEGLLTM EQLSTALKST FPFKKDERIQ ELMEAGGWHP BACU018115/1-711 AQLLKEMTNA DSQNEGLLTM EQLSTALKST FPFKKDERIQ ELMEAGGWHP 601 650 ENSP00000373485/1-658 SSSNADLLNY RSLFMEDEEG QSEPFVQKLW EQYMDEKDEY LQQLKQELGI ENSBTAP00000008380/1-710 SSSNADLLDY RLLFMEDEEG QSVPFVQKLW EQYVVEKDEY LNELKQELGL ENSTTRP00000008771/1-617 SSSNADLLNY CVLFMEDKEG QSVPFVQKLW EQYMDEKDEY LQELKQELDL bmy_05250T0/1-709 SSSNADLLNY CVLFMEDEEG QSVPFVQKLW EQYMDEKDEY LQELKQELDL BACU018115/1-711 SSSNADLLNY CVLFMEDEEG QSMPFVQKLW EQYMDEKDEY LQELKQELDL 651 700 ENSP00000373485/1-658 ELHEEVTLPK LRGGLMTIDP SLDKQTVNTY MSQAFQLPES EMPEEGDEKE ENSBTAP00000008380/1-710 ELNEEVTLPK VREALMNIDP NLDKQTLNHY LRQAFQLPMT EMPEEDEERE ENSTTRP00000008771/1-617 ELHDEVTLPK VHEALMNTDP SLDKQTLNSY LSQAFQLPMT ELPKEGEEKE bmy_05250T0/1-709 ELHDEVTLPK VREALMNIDP SLDKQTLNSY LSQAFQLPMT ELPEEGEEKE BACU018115/1-711 ELHDEVTLPK VREALMNIDP SLDKQTLNSY LSQAFQLPMT ELPEEGEEKE 701 750 ENSP00000373485/1-658 EAVVEILQTA LERLQVIDIR RVGPREPEPA S ENSBTAP00000008380/1-710 EGIVTQLQTA LEQLQMSDIR RMGPREQEPA S ENSTTRP00000008771/1-617 EGIVIRLQAA LEQLQMSDVR RMGP-EQEPA S bmy_05250T0/1-709 EGIVIRLQTA LEQLQMSDVR RMGPREQEPA S BACU018115/1-711 EGIVIRLQTA LEQLQMSDVR RMGPREQEPA S