KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:35:05 2014  Check: 00 ..

 Name: ENSP00000458770/1-156     Len:    171  Check:  315  Weight:  1.00
 Name: bmy_22574T0/1-158         Len:    171  Check:  8933  Weight:  1.00
 Name: BACU018993/1-171          Len:    171  Check:  4922  Weight:  1.00
 Name: ENSTTRP00000004955/1-156  Len:    171  Check:  9203  Weight:  1.00
 Name: ENSBTAP00000008382/1-156  Len:    171  Check:  8516  Weight:  1.00

//


                          1                                                   50
ENSP00000458770/1-156     MASRVLSAYV SRLPAAFAPL PRVRMLAVAR PLSTALCSAG TQTRL----- 
bmy_22574T0/1-158         MAARVLCTCV RRLPAAFVPL PGXSTLAAAR PLST-LCS-- ----P----- 
BACU018993/1-171          MAARVLCACV RRLPAAFAPL PRLPTLAAAR SLCTTLFPAG ARARPGAPHP 
ENSTTRP00000004955/1-156  MAARVLWVCV RRLPAAFAPL PRLPTLAAAR SLCTTLFPAG ARARS----- 
ENSBTAP00000008382/1-156  MAARVLCACV RRLPTAFAPL PRLPTLAAAR PLSTTLFAAE TRTRP----- 


                          51                                                 100
ENSP00000458770/1-156     -GTLQP---- -----ALVLA QVPGRVTQLC RQYSDMPPLT LEGIQDRVLY 
bmy_22574T0/1-158         -WGPGRGLGL RSRPRCSVLA QVPGGVTQLC RQYSDSPPLT LEGIKDHVLY 
BACU018993/1-171          AWGPGRGLGL RSRPRCSVLA QVPGGVTQLC RQDSDSPLLT LEGIQDRVLY 
ENSTTRP00000004955/1-156  -WAPHP---- -----ASVLT QVPGGVTPLC RQYSDAPPLT LEGIKDRVLY 
ENSBTAP00000008382/1-156  -GAPLP---- -----ALVLA QVPGRVTQLC RQYSDAPPLT LEGIKDRVLY 


                          101                                                150
ENSP00000458770/1-156     VLKLYDKIDP EKLSVNSHFM KDLGLDSLDQ VEIIMAMEDE FGFEIPDIDA 
bmy_22574T0/1-158         VLKLYDKTDP EQLSVNSHVM KDLGLDSLDQ VEIIMAMEDE FGFEVPDIDA 
BACU018993/1-171          VLKLYDKTDP EQLSVNSHVM KDLGLDSLDQ VEIIMAMEDE FGFEVPNIDA 
ENSTTRP00000004955/1-156  VLKLYDKIDP EKLSVNSHFM KDLGLDSLDQ VEIIMAMEDE FGFEIPDIDA 
ENSBTAP00000008382/1-156  VLKLYDKIDP EKLSVNSHFM KDLGLDSLDQ VEIIMAMEDE FGFEIPDIDA 


                          151                                                200
ENSP00000458770/1-156     EKLMCPQEIV DYIADKKDVY E 
bmy_22574T0/1-158         EKLVCPQEIV DYIADKKDVY E 
BACU018993/1-171          EKLKCPQEIV DYIADKKDVY E 
ENSTTRP00000004955/1-156  EKLMCPQEIV DYIADKKDVY E 
ENSBTAP00000008382/1-156  EKLMCPQEIV DYIADKKDVY E