KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:06 2014 Check: 00 .. Name: ENSP00000446093/1-930 Len: 989 Check: 8898 Weight: 1.00 Name: ENSTTRP00000011251/1-895 Len: 989 Check: 7023 Weight: 1.00 Name: ENSBTAP00000008383/1-905 Len: 989 Check: 9833 Weight: 1.00 Name: bmy_09756T0/1-905 Len: 989 Check: 827 Weight: 1.00 Name: BACU004794/1-961 Len: 989 Check: 1220 Weight: 1.00 // 1 50 ENSP00000446093/1-930 MSEFRIHHDV NELLSLLRVH GGDGAEVYID LLQKNRTPYV TTTVSAHSAK ENSTTRP00000011251/1-895 MSEFRIHHDV NELLSLLRVH GGDGAEVYID LLQKNRTPYV TTTVSAHSAK ENSBTAP00000008383/1-905 MSEFRIHHDV NELLSLLRVH GGDGAEVYID LLQKNRTPYV TTTVSAHSAK bmy_09756T0/1-905 MSEFRIHHDV NELLSLLRVH GGDGAEVYID LLQRNRTPYV TTTVSAHSAK BACU004794/1-961 MSEFRIHHDV NELLSLLRVH GGDGAEVYID LLQRNRTPYV TTTVSAHSAK 51 100 ENSP00000446093/1-930 VKIAEFSRTP EDFLKKYDEL KSKNTRNLDP LVYLLSKLTE DKETLQYLQQ ENSTTRP00000011251/1-895 VKIAEFSRTP EDFLKKYDEL KSKNTRNLDP LVYLLSKLTE DRETLQYLQQ ENSBTAP00000008383/1-905 VKIAEFSRTP EDFLKKYDEL KSKNTRNLDP LVYLLSKLTE DRETLQYLQQ bmy_09756T0/1-905 VKIAEFSRTP EDFLKKYDEL KSKNTRNLDP LVYLLSKLTE DRETLQYLQQ BACU004794/1-961 VKIAEFSRTP EDFLKKYDEL KSKNTRNLDP LVYLLSKLTE DRETLQYLQQ 101 150 ENSP00000446093/1-930 NAKERAELAA AAVGSSTTSI NVPAAASKIS MQELEELRKQ LGSVATGSTL ENSTTRP00000011251/1-895 NAKDRAELVA GA-------- --PAAASRIS VQELEELRKQ LGSVATGPTW ENSBTAP00000008383/1-905 NAKERAELAA SAAASSTASF GAPATASKIS MQELEELRKQ LGNVATGPTW bmy_09756T0/1-905 NAKERAELAA GAAXSSTASF GAPAAASKIS MQELEELRKQ LGSVATGPTW BACU004794/1-961 NAKERAELAA GATASSTASF PAPAAASKIS MQELEELRKQ LGSVATGPTW 151 200 ENSP00000446093/1-930 QQSLELKRKM LRDKQNKKNS GQHLPIFPAW VYERPALIGD FLIGAGISTD ENSTTRP00000011251/1-895 QQSLELTRKM LRDKQNKKNL GQRLPVFPAW VYERPMLLGD FLTGSGASMD ENSBTAP00000008383/1-905 QQSLELTRKM LRDKQNKKNS GQRLPVFPAW VYERPTLLGD FLTGSGTSTD bmy_09756T0/1-905 QQSLELTRKM LRDKQNKKNL GQRLPVFPAW VYERPMLLGD FLTGSGASMD BACU004794/1-961 QQSLELTRKM LRDKQNKKNL GQRLPVFPAW VYERPMLLGD FLTGSGASMD 201 250 ENSP00000446093/1-930 TALPIVLLRW NLALSPRLKC SGVISAHCNL HLPGTLPLAS QESAVVEDLL ENSTTRP00000011251/1-895 AAVPI----- ---------- ---------- ---GTLPLAA QEAAVVEDLL ENSBTAP00000008383/1-905 AAVPI----- ---------- ---------- ---GTLPLAS QEAAIVEDLL bmy_09756T0/1-905 AAVPI----- ---------- ---------- ---GTLPLAA QEAAVVEDLL BACU004794/1-961 VAVPI----- ---------- ---------- ---GTLPLAA QEAAVVEDLL 251 300 ENSP00000446093/1-930 YVLVGVDGRY VSAQPLAGRQ SRTFLVDPNL DLSIRELVHR ILPVAASYSA ENSTTRP00000011251/1-895 YVLVGVDGRY VTAQPLTGRQ SRTFLVDPSL DLSIRELVSR VLPAASSYST ENSBTAP00000008383/1-905 YVLVGVDGRY ITAQPLTGRQ SRTFLVDPNL DLSIRELVSR ILPVAASYST bmy_09756T0/1-905 YVLVGVDGRY VTAQPLTGRQ SRTFLVDPSL DLSIRELVSR VLPAASSYST BACU004794/1-961 YVLVGVDGRY ITAQPLTGRQ SRTFLVDPSL DLSIRELVSR VLPAASSYST 301 350 ENSP00000446093/1-930 VTRFIEEKSS FEYGQVNHAL AAAMRTLVKE HLILVSQLEQ LHRQGLLSLQ ENSTTRP00000011251/1-895 VTRFVEEKSS FEYGQVNHAL TAAMRTLVKE YLILVTQLEQ LQRQGLLSLQ ENSBTAP00000008383/1-905 VTRFIEEKSS FEYGQVNHAL AAAMRTLLKE YLILVTQLEQ LQRQGLLSLQ bmy_09756T0/1-905 VTRFVEEKSS FEYGQVNHAL AAAMRTLVKE YLILVTQLEQ LQRQGLLSLQ BACU004794/1-961 VTRFVEEKSS FEYGQVNHAL AAAMRTLVKE YLILVTQLEQ LQRQGLLSLQ 351 400 ENSP00000446093/1-930 KLWFYIQPAM RTMDILASLA TSVDKGECLG GSTLSLLHDR SFSYTGDSQA ENSTTRP00000011251/1-895 KLWFHIQPAM RTVDILASLA TSVDKGECVG GSTLSLLHDR SFSYTGDSQA ENSBTAP00000008383/1-905 KLWFYIQPAM RTVDILASLA TSVDKGECVG GATLSLLHDR SFSYTGDSQA bmy_09756T0/1-905 KLWFHIQPAM RTVDILASLA TSVDKGECVG GSTLSLLHDR SFSYTGDSQA BACU004794/1-961 KLWFHIQPAM RTVDILASLA TSVDKGECVG GSTLSLLHDR SFSYTGDSQA 401 450 ENSP00000446093/1-930 QELCLYLTKA ASAPYFEVLE KWIYRGIIHD PYSEFMVEEH ELRKERIQED ENSTTRP00000011251/1-895 QELCLYLTTA ASVPYFEILE KWIYRGIIDD PYSEFMVEER ELRKEKIQED ENSBTAP00000008383/1-905 QELCLYLTTA ASVPYFEILE KWIYRGIIDD PYSEFMVEEH ELRKEKIQED bmy_09756T0/1-905 QELCLYLTTA ASVPYFEILE KWIYRGIIDD PYSEFMVEEH ELRKEKIQED BACU004794/1-961 QELCLYLTTA ASVPYFEILE KWIYRGIIDD PYSEFMVEEH ELRKEKIQED 451 500 ENSP00000446093/1-930 YNDKYWDQRY TIVQQQIPSF LQKMADKILS TGKYLNVVRE CGHDVTCPVA ENSTTRP00000011251/1-895 YNDRYWEQRY TVVQRQIPSF LQKMAGKVLS TGKYLNVVRE CGRDVTCPVA ENSBTAP00000008383/1-905 YNDKYWELRY TVVQRHIPSF LQKMAGKVLS TGKYLNVVRE CGHDVTCPAA bmy_09756T0/1-905 YNDKYWDQRY TVVPRQIPSF LQKMAGKALS TGKYLNVVRE CGHDVTCPVA BACU004794/1-961 YNDKYWDQRY TVVPRQIPSF LQKMAGKALS TGKYLNVVRE CGHDVTCPVA 501 550 ENSP00000446093/1-930 KEIIYTLKER AYVEQIEKAF NYASKVLLDF LMEEKELVAH LRSIKRYFLM ENSTTRP00000011251/1-895 KEVIYTLKER AYVEQIEKAF SYASKVLLDF LTEEKELVAR LRSIKRYFLM ENSBTAP00000008383/1-905 KEVIYTLKER AYVEQIEKAF GYASKVLLGF LMEEKELVAH LRSIKRYFLM bmy_09756T0/1-905 KEVIYTLKER AYVEQIEKAF NYASKVLLDF LMEEKELVAR LRSIKRYFLM BACU004794/1-961 KEVIYTLKER AYVEQIEKAF NYASKVLLDF LMEEKELVAR LRSIKRYFLM 551 600 ENSP00000446093/1-930 DQGDFFVHFM DLAEEELRKP VEDITPPRLE ALLELALRMS TANTDPFKDD ENSTTRP00000011251/1-895 DQGDFFVHFM DLTEEELKKP VDDITPTRLE ALLELALRMS TANTDPFKDD ENSBTAP00000008383/1-905 DQGDFFVHFM DLTEEELKKP VDDITPTRLE ALLELALRMS TANTDPFKDD bmy_09756T0/1-905 DQGDFFVHFM DLTEEELKKP VDDITPTRLE ALLELALRMS TANTDPFKDD BACU004794/1-961 DQGDFFVHFM DLTEEELKKP VDDITPTRLE ALLELALRMS TANTDPFKDD 601 650 ENSP00000446093/1-930 LK-------- ---------- ---------- ---------- ---------- ENSTTRP00000011251/1-895 LK-------- ---------- ---------- ---------- ---------- ENSBTAP00000008383/1-905 LK-------- ---------- ---------- ---------- ---------- bmy_09756T0/1-905 LK-------- ---------- ---------- ---------- ---------- BACU004794/1-961 LKDKILEVRF LGQSTRPVLH WADITDAQSP GPGLPAESGH GPGGREHSHS 651 700 ENSP00000446093/1-930 --------ID LMPHDLITQL LRVLAIETKQ EKAMAHADPT ELALSGLEAF ENSTTRP00000011251/1-895 --------ID LMPHDLITQL LRVLAIETKQ EKAMVHADPT ELTLSGLEAF ENSBTAP00000008383/1-905 --------ID LMPHDLITQL LRVLAIETKQ EKAMVHADPT ELTLSGLEAF bmy_09756T0/1-905 --------ID LMPHDLITQL LRVLAIETKQ EKAMVHADPT ELTLSGLEAF BACU004794/1-961 GSASAAGDID LMPHDLITQL LRVLAIETKQ EKAMVHADPT ELTLSGLEAF 701 750 ENSP00000446093/1-930 SFDYIVKWPL SLIINRKALT RYQMLFRHMF YCKHVERQLC SVWISNKTAK ENSTTRP00000011251/1-895 SFDYVVKWPL SLIINRKALT RYQMLFRHMF YCKHVERQLC NVWISNKTAK ENSBTAP00000008383/1-905 SFDYVVKWPL SLIINRKALT RYQMLFRHMF YCKHVERQLC SVWISNKTAK bmy_09756T0/1-905 SFDYVVKWPL SLIINRKALT RYQMLFRHMF YCKHVERQLC NVWISNKTAK BACU004794/1-961 SFDYVVKWPL SLIINRKALT RYQMLFRHMF YCKHVERQLC NVWISNKTAK 751 800 ENSP00000446093/1-930 QHSLHSAQWF AGAFTLRQRM LNFVQNIQYY MMFEVMEPTW HILEKNLKSA ENSTTRP00000011251/1-895 QYSLHSAKWF AGAFTLRQRM LNFVQNIQYY MMFEVLEPTW HVLEKSLRSA ENSBTAP00000008383/1-905 QHSLHSAKWF AGAFTLRQRM LNFVQNVQYY MMLEVVEPTW HVLEKSLRSA bmy_09756T0/1-905 QYSLHSAKWF AGAFTLRQRM LNFVQNIQYY MMFEVLEPTW HVLEKSLRSA BACU004794/1-961 QYSLHSAKWF AGAFTLRQRM LNFVQNIQYY MMFEVLEPTW HVLEKSLRSA 801 850 ENSP00000446093/1-930 SNIDDVLGHH TGFLDTCLKD CMLTNPELLK VFSKLMSVCV MFTNCMQKFT ENSTTRP00000011251/1-895 SNIDDVLGHH TSFLDSCLKD CMLTNPELLR VFSKLMSVCV MFTNCMQRFT ENSBTAP00000008383/1-905 STIDDVLGHH ASFLDGCLKD CMLTNPELLR VFSKLMSVCV MFTNCMQRFT bmy_09756T0/1-905 SNIDDVLGHH TSFLDNCLKD CMLTNPELLR VFSKLMSVCV MFTNCMQRFT BACU004794/1-961 SNIDDVLGHH TSFLDSCLKD CMLTNPELLR VFSRLMSVCV MFTNCMQRFT 851 900 ENSP00000446093/1-930 QSMKLDGELG GQTLEHSTVL GLPAG---AE ERARKELARK HLAEHADTVQ ENSTTRP00000011251/1-895 QSMKLDSELG HLTLEHGTMR GPPTEAERAE ERARKELARK XXXXXXXXXX ENSBTAP00000008383/1-905 QSMKLDSELG RLTLEHGTMQ GPPTEAERAE ERTRKELARK CLAEHVDAPQ bmy_09756T0/1-905 QSMKLDSELG HLTLEHGTMQ GPPTEAERAE ERARKELARK CLAEHVDAPQ BACU004794/1-961 QSMKLDSELG HLTLEHGTMR GPPTEAERAE ERARKELARK CLAEHVDAPQ 901 950 ENSP00000446093/1-930 LVSGFEATIN KFDKNFSAHL LDLLARLSIY STSDCEHGMA SVISRLDFNG ENSTTRP00000011251/1-895 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXLDFNG ENSBTAP00000008383/1-905 LASSFEATIN KFDKNFSAHL LDLLARLSVY STSDCEHGMA SVISRLDFNG bmy_09756T0/1-905 LASSFEATIS KFDKNFSAHL LDLLARLSIY STSDCEHGMA SVISRLDFNG BACU004794/1-961 LASSFEATIS KFDKNFSAHL LDLLARLSIY SPSDCEHGMA SVISRLDFNG 951 1000 ENSP00000446093/1-930 FYTERLERLS AERSQKATPQ VPVLRGPPAP APRVAVTAQ ENSTTRP00000011251/1-895 FYTERLERLS AERSQKAAPP VPNPRGPPAP APRVAVTAQ ENSBTAP00000008383/1-905 FYTERLERLS AERSQKVAPP VPGPRGPPAP APRVAVPAQ bmy_09756T0/1-905 FYTERLERLS AERSQKAAPP VPSPRGPPAP APRVAVTAQ BACU004794/1-961 FYTERLERLS AERSQKAAPP VPSPRGPPAP GPRVAVTAQ