KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:06 2014 Check: 00 .. Name: bmy_07079T0/1-337 Len: 575 Check: 4698 Weight: 1.00 Name: BACU014890/1-567 Len: 575 Check: 1931 Weight: 1.00 Name: ENSP00000372326/1-429 Len: 575 Check: 2896 Weight: 1.00 Name: ENSTTRP00000012293/1-428 Len: 575 Check: 9799 Weight: 1.00 Name: ENSBTAP00000008384/1-416 Len: 575 Check: 739 Weight: 1.00 // 1 50 bmy_07079T0/1-337 ---------- ---------- ---------- ---------- ---------- BACU014890/1-567 -------MAA ALRSAGVLLR DRRKWGCCGR RRGGNSGQLA PGSPGLGTSK ENSP00000372326/1-429 MRSLGANMAA ALRAAGVLLR DP-------- ---------- ---------- ENSTTRP00000012293/1-428 MVLVSTNMAA ALRSAGVLLR DR-------- ---------- ---------- ENSBTAP00000008384/1-416 -------MAA ALRSAGVLLR DR-------- ---------- ---------- 51 100 bmy_07079T0/1-337 ---------- ---------- ---------- ---------- ------MVAQ BACU014890/1-567 ERRRAAQEAA RDGARGGEGI RKGALPWERR EGARFHAATL ILSQWYVVAQ ENSP00000372326/1-429 ---------- ---------- ---------- ---------L ASSSWRVCQP ENSTTRP00000012293/1-428 ---------- ---------- ---------- ---------L VYGGSRACQP ENSBTAP00000008384/1-416 ---------- ---------- ---------- ---------L LYGGSRACQP 101 150 bmy_07079T0/1-337 GPVSHGGASR VQPQQQLPQK QPNVPEA-PD LKFSRG---- ---------- BACU014890/1-567 GPASHGGASR VQPQQQLPQK QPNVPEA-PD LKFSRGTASF TPVAWGKTGP ENSP00000372326/1-429 WRWKSGAAAA AVTTETAQHA QGAKPQVQPQ KRYESN---- ---------- ENSTTRP00000012293/1-428 RRCQSSAATA AAATETAQRA RSPRPQVQPG NRYESN---- ---------- ENSBTAP00000008384/1-416 RRCQSGAATA AAATETAQRA RSPKPQAQPG NR-------- ---------- 151 200 bmy_07079T0/1-337 ---------- ---------- ---------- ---------- ---------- BACU014890/1-567 QFSTVPSQAL TLWFRPGSWS SGGFPKLRGD TWSCCGPSLP PGWFRNRELI ENSP00000372326/1-429 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012293/1-428 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008384/1-416 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_07079T0/1-337 ---------- ---------- TGMSLI---- ---LGTNKDF ---------- BACU014890/1-567 LAWLTSAVQA SELLWILKPK TGILMLNMGG PETVGEVHNF LLRLFLDRDL ENSP00000372326/1-429 ---------- -----IRKPK TGILMLNMGG PETLGDVHDF LLRLFLDRDL ENSTTRP00000012293/1-428 ---------- -----FRKPK TGILMLNMGG PETVGEVHDF LLRLFSDRDL ENSBTAP00000008384/1-416 ---------- -------KPR TGILMLNMGG PETVEEVQDF LQRLFLDQDL 251 300 bmy_07079T0/1-337 -SFSTQTPLG XFIAKRRTPK IQEQYRRIGG GSPIKMWTSK QGEGMVKLLD BACU014890/1-567 ITLPVQNKLG PFIAKRRTPK IQEQYRRIGG GSPIKMWTSK QGEGMVKLLD ENSP00000372326/1-429 MTLPIQNKLA PFIAKRRTPK IQEQYRRIGG GSPIKIWTSK QGEGMVKLLD ENSTTRP00000012293/1-428 MTLPVQNKLG PFIAKRRTPK IQEQYRRIGG GSPIKMWTTK QGEGMVKLLD ENSBTAP00000008384/1-416 MTLPVQDKLG PFIAKRRTPK IQEQYRRIGG GSPIKMWTSK QGEGMVKLLD 301 350 bmy_07079T0/1-337 ELSPHTAPHK YYIGFRYVHP LTEEAVEEME RDGLERAIAF TQYPQYSCST BACU014890/1-567 ELSPHTAPHK YYIGFRYVHP LTEEAVEEME RDGLERAIAF TQYPQYSCST ENSP00000372326/1-429 ELSPNTAPHK YYIGFRYVHP LTEEAIEEME RDGLERAIAF TQYPQYSCST ENSTTRP00000012293/1-428 ELSPHTXXXX XXXXXXXXXX XXXXXXXEME RDGLERAIAF TQY-QYSCST ENSBTAP00000008384/1-416 ELSPHTAPHK YYIGFRYVHP LTEEAIEEME RDGLERAVAF TQYPQYSCST 351 400 bmy_07079T0/1-337 TGSSLNAIYR YYNEVGKKPT MKWSTIDRWP THPLLIQCFA DHILKELDHF BACU014890/1-567 TGSSLNAIYR YYNEVGKKPT MKWSTIDRWP THPLLIQCFA DHILKELDHF ENSP00000372326/1-429 TGSSLNAIYR YYNQVGRKPT MKWSTIDRWP THHLLIQCFA DHILKELDHF ENSTTRP00000012293/1-428 TGSSLNAIYR YYNEVGKKPT MKWSTIDRWP THPLVIQCFA DHILKELDHF ENSBTAP00000008384/1-416 TGSSLNAIYR YYNEVGRKPT MKWSTIDRWP THPLLIQCFA DHILKELDHF 401 450 bmy_07079T0/1-337 PLEKRREVVI LFSAHSLPMS VVNRGDPYPQ EVGATVQRVM DKLGYSNPYR BACU014890/1-567 PLEKRREVVI LFSAHSLPMS VVNRGDPYPQ EVGATVQRVM EKLGFSNPYR ENSP00000372326/1-429 PLEKRSEVVI LFSAHSLPMS VVNRGDPYPQ EVSATVQKVM ERLEYCNPYR ENSTTRP00000012293/1-428 PLEKRREVVI LFSAHSLPMS VVNRGDPYPQ EVGATVQRVM DKLGYSNPYR ENSBTAP00000008384/1-416 PPEKRREVVI LFSAHSLPMS VVNRGDPYPQ EVGATVQRVM DKLGYSNPYR 451 500 bmy_07079T0/1-337 LVWQSKVGPM PWLGPLTDEA IRGLCERGRK NILLVPIAFT SDHIETLYEL BACU014890/1-567 LVWQSKVGPM PWLGPLTDEA IRGLCERGRK NILLVPIAFT SDHIETLYEL ENSP00000372326/1-429 LVWQSKVGPM PWLGPQTDES IKGLCERGRK NILLVPIAFT SDHIETLYEL ENSTTRP00000012293/1-428 LVWQSKVGPM PWLGPLTNEA IRGLCERGRK NILLVPIAFT SDHIETLYEL ENSBTAP00000008384/1-416 LVWQSKVGPM PWLGPQTDEA IKGLCKRGRK NILLVPIAFT SDHIETLYEL 501 550 bmy_07079T0/1-337 DIEYSQVLAS ESS--NL-KD KATKKPSAFQ KGKEKILAT- ---------- BACU014890/1-567 DIEYSQVLAS ECGVENIRRA ESLNGNPLFS KALADLVHSH IQSNERCSTQ ENSP00000372326/1-429 DIEYSQVLAK ECGVENIRRA ESLNGNPLFS KALADLVHSH IQSNELCSKQ ENSTTRP00000012293/1-428 DIEYSQVLAS ECGVENIRRA ESLNGNPLFS KALADLVHSH IQSNERCSTQ ENSBTAP00000008384/1-416 DIEYSQVLAS ECGLENIRRA ESLNGNPLFS KALADLVHSH LQSKERCSTQ 551 600 bmy_07079T0/1-337 ---------- ---------- ----- BACU014890/1-567 LTLSCPLCVN PVCRETKSFF SSQQL ENSP00000372326/1-429 LTLSCPLCVN PVCRETKSFF TSQQL ENSTTRP00000012293/1-428 LTLSCPLCVN PVCRETKSFF SSQQL ENSBTAP00000008384/1-416 LTLSCPLCVN PTCRETKSFF TSQQL