KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:08 2014 Check: 00 .. Name: ENSP00000261584/1-1186 Len: 1243 Check: 4944 Weight: 1.00 Name: ENSBTAP00000008398/1-1185 Len: 1243 Check: 5270 Weight: 1.00 Name: ENSTTRP00000004957/1-1187 Len: 1243 Check: 2681 Weight: 1.00 Name: bmy_21417T0/1-1155 Len: 1243 Check: 6584 Weight: 1.00 Name: BACU011862/1-1233 Len: 1243 Check: 9102 Weight: 1.00 // 1 50 ENSP00000261584/1-1186 ---------M DEPPGKPLSC EEKEKLKEKL AFLKREYSKT LARLQRAQRA ENSBTAP00000008398/1-1185 ---------M EEPPGKTLSC EEKEKLKEKL AFLKREYTKT LARLQRAQRA ENSTTRP00000004957/1-1187 ---------M EEPPGKPLSC EEKEKLKEKL AFLKREYSKT LARLQRAQRA bmy_21417T0/1-1155 MLFLLAAGQM EEPPGKPLSC EEKEKLKEKL AFLKREYSKT LARLQRAQRA BACU011862/1-1233 MLFLLAAGQM EEPPGKPLSC EEKEKLKEKL AFLKREYSKT LARLQRAQRA 51 100 ENSP00000261584/1-1186 EKIKHSIKKT VEEQDCLSQQ DLSPQLKHSE PKNKICVYDK LHIKTHLDEE ENSBTAP00000008398/1-1185 EKFKNSLRRT VEEQDSSLQQ EVSTQLTHTE PKNTVSPRDT LQINTHVDEE ENSTTRP00000004957/1-1187 EKFKNSIKRT VEGQDSSLQQ K-SLQLM-TE PKNKVSPCDT LQINTHVDKE bmy_21417T0/1-1155 EKFKNSIKRT VEGQDSSLQQ EVSTQLTHTD PKNKVSPCDT LQINTHVDKE BACU011862/1-1233 EKFKNSIKRT VEGQDSSLQQ EVSTQLTDTE PKNKVSPCDT LQINTHVDKE 101 150 ENSP00000261584/1-1186 TGEKTSITLD VGPESFNPGD GPG-GLPIQR TDDTQEHFPH RVSDPSGEQK ENSBTAP00000008398/1-1185 TGEKTPSSLD IKPELFSSGR VSVEGSRIQG SDDNQEHFPF RVNGPDAKKR ENSTTRP00000004957/1-1187 TGEKTPITLD LEPESFSPGR IPAEGSRIQR SDDIQEHFPY GVSGPDGKKR bmy_21417T0/1-1155 TGEKTPITLD LEPESFSPGR VPAEGSRTQR SDDIQEHFPY RVSGPDGKKR BACU011862/1-1233 TGEKTPITLD LEPESFSPGR VPAEGSRTQR SDDIQEHSPC RVSGPDGKKR 151 200 ENSP00000261584/1-1186 QKLPSRRKKQ QKRTFISQER DCVFGTDSLR LSGKRLKEQE EISSKNPARS ENSBTAP00000008398/1-1185 QNKLLGRRKK EERTYISQER ESLSDIDSLI LSGKRLKEQE KMNRENP-RT ENSTTRP00000004957/1-1187 QSKLLGRRKK QERTFISQER ESFFDIDSLI LSGKRLKEQE EINRENP-KT bmy_21417T0/1-1155 ESKLLGRRRK QERTFISQER ESFFDVDSLI LSGKRLKEQE EINRGNP-KT BACU011862/1-1233 ESKLLGRRRK QERTFISQER ESFFDVDSLI LSGKRLKEQE EINRENP-KT 201 250 ENSP00000261584/1-1186 PVTEIRTHLL -SLKSELPDS PEPVTEINED SVLIPPTAQP EKGVDTFLRR ENSBTAP00000008398/1-1185 PVTELRTYPL SSPKCAIPNS PAPVTETNVG SVLILPSTKP QRDVDALLRG ENSTTRP00000004957/1-1187 PVTEIRTYPS -SPKSDIPDS PAPVTGTNVG SVLILPNAKP QRDVDALLRG bmy_21417T0/1-1155 PVTEIRTYLS -SPEFDIPDS PAPVTGNNVG SVLILPNTKP QRDVDALLRG BACU011862/1-1233 PVTEIRTYPS -SPKFDIPDS PAPVTGNNVG SVLILPNAKP QRDVDVLLRG 251 300 ENSP00000261584/1-1186 PNFTRATTVP LQTLSDSGSS QHLEHIPPKG SSELTTHDLK NIRFTSPVSL ENSBTAP00000008398/1-1185 NDFPRATTLP LPTPSNSSNS QRLEHKCPKS NCELTTHSLR NISSASPVNL ENSTTRP00000004957/1-1187 NNFPRVTTLP LHVPSVSSSG QHLEHEPPKS NCELTTHSLE NISPASPVNL bmy_21417T0/1-1155 NNFPRVTTLP LHAPSVSSSG QHLEHKPPKS NCELTTHSLK NISPASPVNL BACU011862/1-1233 NNFPRVTTLP LHAPSVSSSG QHLEHKPPKS NCELTTHSLK NISSASPVNL 301 350 ENSP00000261584/1-1186 EAQGKKMTVS TDNLLVNKAI SKSGQLPTSS NLEANISCSL NELTYNNLPA ENSBTAP00000008398/1-1185 EVQKKKITVS TDNPEVNKAG STSGQAARSP NLEADNSCFI NELTCDNLVE ENSTTRP00000004957/1-1187 ETQNKKMTVF TDNPEVNKSI SASDQPPRSP NLEAGNSCSI NELTYDNLVA bmy_21417T0/1-1155 ETQNKKMTVF TDNPEVNKSI TASGQPPRSP NLEADNSCSI NELTYDNLVA BACU011862/1-1233 EAQNEKMTVF TDNPEVNKSI TASGQPLRSP NLEADNSCSI NELTYDKLVA 351 400 ENSP00000261584/1-1186 NENQNLKEQN QTEKSLKSPS DTLDGRNENL QESEILSQPK SLSLEATSPL ENSBTAP00000008398/1-1185 NENQNLKEQN HTEMSLKSPN DALGGRNESL LEKEVLSQSK NLSLEVISPV ENSTTRP00000004957/1-1187 NENQNLKEQN HTEMSFKSPN NALGGRNESR LEKEVPSQSK SLSLEVISPV bmy_21417T0/1-1155 NENQNLKEQN HTEMSFKSPN NALGGRNESP LEKEVLSQSK SLSLEVLSPA BACU011862/1-1233 NENQNLKEQN HTEMSFKSPN NALGGRNESP LEKEVLSQSK SLSLEVLSPA 401 450 ENSP00000261584/1-1186 SAEK--HSCT VPEGLLFPAE YYVRTTRSMS NCQRKVAVEA VIQSHLDVKK ENSBTAP00000008398/1-1185 STEDQIHSCT VLEGLLFPAE YYVRTTRRMS GCQRKVALEA VIQSHLGVRK ENSTTRP00000004957/1-1187 STENQTHSCT VLEGLLFPAE YYVRTTRRMS DCQRKVALEA VIQSHLDVRK bmy_21417T0/1-1155 STENQTHSCT VLEGLLFPAE YYVRTTRRMS NCQRKVALEA VIQSHLGVRK BACU011862/1-1233 SAENQTHSCT VLEGLLFPAE YYVRTTRRMS NCQRKVALEA VIQSHLGVRK 451 500 ENSP00000261584/1-1186 KGFKNKNKDA SKNLNLSNEE TDQSEIRMSG TCTGQPSSRT SQKLLSLTKV ENSBTAP00000008398/1-1185 KGFKNKSMKS AKKFNVCNEK TKQSEIKVSD KHAEQPSSRS PQKLLSLTEV ENSTTRP00000004957/1-1187 KGFKNKNKES AKKLNVSNEE TNQSEIKMSH TYAEQPSSKS PQKLLSLTEV bmy_21417T0/1-1155 KGFKNKNKES ANKLNVSSEE TNQSEIKMSD TYAEQPSSKS PQKLLSLTEV BACU011862/1-1233 NGFKNKNKES AKKLNVSNEE TNQREIKMSD TYAEQPSSKS PQRLLLLTEV 501 550 ENSP00000261584/1-1186 SSPAGPTEDN DLSRKAVAQA PGRRYTGKRK SACTPASDHC EPLLPTSSLS ENSBTAP00000008398/1-1185 SFSTDSTED- DFSRKTVTKP SGKKCRGRRK SACTSLLDHH ELLLPTTGTS ENSTTRP00000004957/1-1187 NSPAGPTKN- DFSGKAVTQP SGRKRKGRRK SVCTPLLDHH ELLLPTSGTS bmy_21417T0/1-1155 NSPAGPTKD- DFSRKAVTQP SGRKHKGRRK SVCTPLLDHH ELLLPTSGTS BACU011862/1-1233 NSPAGPTKD- DFSRKAVTQP SGRKRKGRRK SACTPLLDHH ELLLPTSDTS 551 600 ENSP00000261584/1-1186 IVNRSKEEVT SHKYQHEKLF IQVK------ ---------- ---------- ENSBTAP00000008398/1-1185 GVKKSKEEIA LHKDQNEKAI VHIL------ ---------- ---------- ENSTTRP00000004957/1-1187 GVNRSKEEVA LHRDQNEKAI IHGKKRGK-- ---------- ---------- bmy_21417T0/1-1155 GVNRSKEEVA LHKDQNEKAI IH-------- ---------- ---------- BACU011862/1-1233 GVNRSKEEVA LHKDRNEKAI IHGVTSDKLS TKSRSFTPVL CESSATFCKG 601 650 ENSP00000261584/1-1186 ---------- ---GKKSRHQ KEDSLSWSNS AYLSLDDDAF TAPFHRDGML ENSBTAP00000008398/1-1185 ---------- ---GKEGHCQ KEDFLCYSNY AYFSSDDDAF SAPFRKNRML ENSTTRP00000004957/1-1187 ---------- ---EKEGHCQ KEDSLSYSNY VYLSLDDDAF SSPVHKSETL bmy_21417T0/1-1155 ---------- ---EKEGHCQ KEDSLSYSNY VYLSLDDDAF SSSFRKNEML BACU011862/1-1233 PDMKYGLCAA SQLQKEGHCQ KEDSLSYSNY VYLSLDDDAF SSSFHKNEML 651 700 ENSP00000261584/1-1186 SLKQLLSFLS ITDFQLPDED FGPLKLEKVK SCSEKPVEPF ESKMFGERHL ENSBTAP00000008398/1-1185 SLKHLSSFLK ITDFQLPDED FGSLKLEKLK SCSKKLMETF GSKVHGEGHL ENSTTRP00000004957/1-1187 NLKHLSPFLK ITDFQLPDED FGPLKLEKLK SCSEKLMEPF GSKIYGEGHL bmy_21417T0/1-1155 NLKHLSPFLK ITDFQLPDED FGPLKLEKLK SCSEKLMEPF GSKTYGEGHL BACU011862/1-1233 NLKHLSPFLK ITDFQLPDED FGPLKLEKLK SCSEKLMEPF GSKTYGEGHL 701 750 ENSP00000261584/1-1186 KEGSCIFPEE LSPKRMDTEM EDLEEDLIVL PGKSHPKRPN SQSQHTKTGL ENSBTAP00000008398/1-1185 KGESYIVVEE PSPKQSNIEK EGMEEELITL PGKAHPKMPS QRSQPRGKDL ENSTTRP00000004957/1-1187 KGGNCVAVEQ LTPKRITIEK EDGKEERIIL PGKAHPKMPN QKSQPQEKGL bmy_21417T0/1-1155 KGGNCVAVEE LTPKQITIEK EDGKEELIIL PGKAHPKMPS KKSQPQEKGL BACU011862/1-1233 KGGNCVAVEE LNPKQITIEK EDGKEELIIL PGKAHPKMPS KKSQPQEKGL 751 800 ENSP00000261584/1-1186 SSSILLYTPL NTVAPDDNDR PTTDMCSPAF PILGTTPAFG PQGSYEKAST ENSBTAP00000008398/1-1185 SSSILLFTPL NSVASDDNDR LTAELCSPAF PILGATPAFG SQAHREKVSA ENSTTRP00000004957/1-1187 SSSILLFTPV NTVVSDDNDR PTAELCSPAF PVLGSTPAFG SQAHGEKVSA bmy_21417T0/1-1155 SSSILLFTPV NTVASDDNDR PTADLCSPAF PVLGSTPAFG SQAHGEKMSA BACU011862/1-1233 SSSILLFTPI NTVASDDNDR PTADLCSPAF PVLGSTPAFG SQAHGEKMSA 801 850 ENSP00000261584/1-1186 EVAGRTCCTP QLAHLKDSVC LASDTKQFDS SGSPAKPHTT LQVSGRQGQP ENSBTAP00000008398/1-1185 EVVGQTCSPP RLSHLKATVS LAGNRKQGNS WSRPSKLDSS QHVAGRAGQP ENSTTRP00000004957/1-1187 EVVGQACSTP QLSHLKAAVS LASDHKQF-- WSSPPKLDSS LHVAGREGQP bmy_21417T0/1-1155 EVVGQACSTP QLSHLKATVS LASDHKQF-- WSSPPKLDSS LHVAGREGQP BACU011862/1-1233 EVVGQACSTP QLSHLKATVS LASDHKQF-- WSSPPKLDSS LHVAGREGQP 851 900 ENSP00000261584/1-1186 TCDCDSVPPG TPPPIESFTF KENQLCRNTC QELHKHSVEQ TETAELPASD ENSBTAP00000008398/1-1185 SCDPDSGPQA TTLPTESFTY EASQL----- QESQRHSAEQ TEIAEVPAWG ENSTTRP00000004957/1-1187 SRDCDSGPQA TALPIESSTY KENQLRGNTC QELRKHSTEQ TEIADVPACD bmy_21417T0/1-1155 SRDCDSGPQA TPLPIESSTY KENQLRGNTC QESRKHSTEQ TEIADVPACD BACU011862/1-1233 SRDCDSGPQA TPLPIESSTY KENQLRGNTC QESRKHSTEQ TEIADVPACD 901 950 ENSP00000261584/1-1186 SINPGNLQLV SELKNPSGSC SVDVSAMFWE RAGCKEPCII TACEDVVSLW ENSBTAP00000008398/1-1185 SLHPGTLHVV SNLKNPSGSC SVDMSATWWE IAGFKEPCII TACEYVVSLW ENSTTRP00000004957/1-1187 SLNPGTLQLV SKLKNPSGSC SVDVSAMWWE IAGFKERCII TACEYVVSLW bmy_21417T0/1-1155 SLNPGTLQLV SKLKNPSGSC SVDVSAMWWE IAGFKERCII TACEYVVSLW BACU011862/1-1233 SLNPGTLQLV SKLKNPSGSC SVDVSAMWWE IAGFKERCII TACEYVVSLW 951 1000 ENSP00000261584/1-1186 KALDAWQWEK LYTWHFAEVP VLQIVPVPDV YNLVCVALGN LEIREIRALF ENSBTAP00000008398/1-1185 KPLDAWQWEK IYSWHFTEFP VLQIVAVPDV CNLVCVALGN LEIREIRALL ENSTTRP00000004957/1-1187 KPLDTWQWEK IYSWHFAEVP VLQIVLVPDV CNLVCVALGN LEIREIRALL bmy_21417T0/1-1155 KPLDTWQWEK IYSWHFAEVP VLQIVLVPDV CNLVCVALGN LEIREIRALL BACU011862/1-1233 KPLDTWQWEK IYSWHFAEVP VLQIVLVPDV CNLVCVALGN LEIREIRALL 1001 1050 ENSP00000261584/1-1186 CSSDDESEKQ VLLKSGNIKA VLGLTKRRLV SSSGTLSDQQ VEVMTFAEDG ENSBTAP00000008398/1-1185 CSPDGKSEKQ VLLSSGNIKA VLGLAKRRLV SSSRTLCDQQ VEMMTVAEDG ENSTTRP00000004957/1-1187 CSPDGKSEKQ VLLSSGNIKA VLGLTKRRLV SSSGTLCDQQ VEIMTFAEDG bmy_21417T0/1-1155 CSPDGKSEKQ VLLSSGNIKA VLGLTKRRLV SSSGTLCDQQ VEIMTFAEDG BACU011862/1-1233 CSPDGKSEKQ VLLSSGNIKA VLGLTKRRLV SSSGTLCDQQ VEIMTFAEDG 1051 1100 ENSP00000261584/1-1186 GGKENQFLMP PEETILTFAE VQGMQEALLG TTIMNNIVIW ---NLKTGQL ENSBTAP00000008398/1-1185 GSKEKQLLMP PEETILTFAE VQGMQEALLG TTIMNNIVIW CPRNLKTGQL ENSTTRP00000004957/1-1187 GSKEKQFLMH PEETILTFAE VQGMQEALLG TTVMNNIVIW ---NLKTGQL bmy_21417T0/1-1155 G--------- ---------- ---------- ---------- ---NLKTGQL BACU011862/1-1233 GSKEKQFLMH PEETILTFAE VQGMQEALLG TTVMNNIVIW ---NLKTGQL 1101 1150 ENSP00000261584/1-1186 LKKMHIDDSY QASVCHKAYS EMGLLFIVLS HPCAKESESL RSPVFQLIVI ENSBTAP00000008398/1-1185 LKKMHIDASY QASVCHKAYS EMGLLFVVLS HPCAEENELS GSPVFQLIVI ENSTTRP00000004957/1-1187 LKKMHIGDSY QASVCHKAYS EMGLLFVVLS HPCAKESKLL GSPVFQLIVI bmy_21417T0/1-1155 LKKMHIGDSY QASVCHKAYS EMGLLFVVLS HPCAKESKLL GSPVFQLIVI BACU011862/1-1233 LKKMHIGDSY QASVCHKAYS EMGLLFVVLS HPCAKESKLL GSPVFQLIVI 1151 1200 ENSP00000261584/1-1186 NPKTTLSVGV MLYCLPPGQA GR--FLEGDV KDHCAAAILT SGTIAIWDLL ENSBTAP00000008398/1-1185 NPKTTLSRGV MLYCLPHGQA GR--FLEGDV KDHFAAAVLT SGTIAVWDLL ENSTTRP00000004957/1-1187 NPKTTLSVGV MLYCLPQGQA GR--FLEGDV KDHFAAAVLT SGTIAIWDLL bmy_21417T0/1-1155 NPKTTLSVGV MLYCLPQGQA GRQVFLEGDV KDHFAAAVLT SGTIAIWDLL BACU011862/1-1233 NPKTTLSVGV MLYCLPQGQA GR--FLEGDV KDHFAAAVLT SGTIAIWDLL 1201 1250 ENSP00000261584/1-1186 LGQCTALLPP VSDQHWSFVK WSGTDSHLLA GQKDGNIFVY HYS ENSBTAP00000008398/1-1185 LGHCTALLPP VSGQNWSFVK WSGTDSHLLA GQKDGNIFVY RF- ENSTTRP00000004957/1-1187 LGHCTALLPP VSDQNWSFVK WSGADSHLLA GQKDGNIFVY RYY bmy_21417T0/1-1155 LGHCTALLPP ISDQNWSFVK WSGADSHLLA GQKDGNIFVY RYY BACU011862/1-1233 LGHCTALLPP ISDQNWSFVK WSGADSHLLA GQKDGNIFVY RYY