KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:09 2014 Check: 00 .. Name: ENSBTAP00000008412/1-521 Len: 619 Check: 2607 Weight: 1.00 Name: ENSP00000342188/1-560 Len: 619 Check: 9297 Weight: 1.00 Name: ENSTTRP00000001769/1-563 Len: 619 Check: 3900 Weight: 1.00 Name: bmy_21667T0/1-605 Len: 619 Check: 8850 Weight: 1.00 Name: BACU017831/1-560 Len: 619 Check: 9964 Weight: 1.00 // 1 50 ENSBTAP00000008412/1-521 ---MSSDSEK YEHSSRIQQK SDPQQVSDRI FFIDASNQSL LTIPEDILAL ENSP00000342188/1-560 ---MSKDIKS VEHSPKIHQR NDPQHVNDRT FFIDASNQSL TAIPLEIFTF ENSTTRP00000001769/1-563 IRIMSNDSTK SEHSSRIHQK NDPQQVSDRT FFIDASNQSL LTIPAEILGL bmy_21667T0/1-605 ---MSNDSTK SEHSSRIHQK NDPQQVSDRT FFIDASNQSL LTIPAEILGL BACU017831/1-560 ---MSNDSTK SGHSSIIHQK NDPQQVSDRT FFIDASNQSL LTIPAEILGL 51 100 ENSBTAP00000008412/1-521 RELEEVHLEN NLIAEIPKDI QHLRKIRVLY LNKNKLKNLC PEMGRLSNLE ENSP00000342188/1-560 TELEEVHLEN NQIEEIPQEI QRLKNIRVLY LDKNNLRSLC PALGLLSSLE ENSTTRP00000001769/1-563 RELEEVHLEN NQIAEIPKDI QHLRDVRILY LNKNKLKNLC PELGKLSNLE bmy_21667T0/1-605 PELEEVHLEN NQIAEIPKDI QHLRNVRILY LNKNKLKNLC PELGKLSNLE BACU017831/1-560 RELEEVHLEN NQIAEIPKDI QHLRNVRILY LNKNKLKNLC PELGKLSNLE 101 150 ENSBTAP00000008412/1-521 GLDLSDNPLE ASSLPVLSGI RQLRELRLYR TDLADIPVVI CKLLHHLELL ENSP00000342188/1-560 SLDLSYNPIF SSSLVVVSFL HALRELRLYQ TDLKEIPVVI FKNLHHLELL ENSTTRP00000001769/1-563 GLDLSDNPLL ASSLRVLGGI HKLRELRLYR TDLAEIPTLV CKRLHHLELL bmy_21667T0/1-605 GLDLSDNPLL ASSLRVLSGI RKLRELRLYR TDLAEIPILV CKHLHHLELL BACU017831/1-560 GLDLSDNPLP ASSLRVVSGI RKLRELRLYR TDLAEIPILV CKHLHHLELL 151 200 ENSBTAP00000008412/1-521 GLAGNHLKSL PKEIVNQTKL REIHLKHNLQ RSLWS---CV ISTTXXXXXX ENSP00000342188/1-560 GLTGNHLKCL PKEIVNQTKL REIYLKRN-Q FEVFPQELCV LYTLEIIDLD ENSTTRP00000001769/1-563 GLAGNHLKSL PKEIVNQTKL REIHLKQN-Q FEVFPLELCG LFNLEIIDLD bmy_21667T0/1-605 GLAGNHLKSL PKEMVNQTKL REIHLKRN-Q FEVFPLELCG LYNLEIIDLD BACU017831/1-560 GLAGNHLKSL PKEMVNQTKL REIHLKRN-Q LEVFPLELCG LYNLEVIDLD 201 250 ENSBTAP00000008412/1-521 XXXXXXXXXX XG-------- ---------- ---------- ---------- ENSP00000342188/1-560 ENKIGAIPEE IGHLTGLQKF YMASNNLPVL PASLCQCSQL SVLDLSHNLL ENSTTRP00000001769/1-563 ENKLSAIPEE IGNLTKLKKL YVAYNSLPAL PESLCQCSKL SVLDLSHNRL bmy_21667T0/1-605 ENKLSVIPEE IGNLTKLQKF YVAYNSLPVL PESLCQCSKL SVLDLSHNRL BACU017831/1-560 ENKLSVIPEE IGNLTKLQKF YVAYNSLPVL PESLCQCSKL SVLDLSHNRL 251 300 ENSBTAP00000008412/1-521 ----RALADD GGGAEWEPPG K--DPAPPLQ V---DLALPA LPATGLRVLR ENSP00000342188/1-560 HSIPKSFAEL RKMTEIGLSG NRLEKVPRLI CRWTSLHLLY LGNTGLHRLR ENSTTRP00000001769/1-563 HSVPHTLAEL SQVTEIGLSG NHLEKVPHVL CRWTSLHLLY LHNTGLRVLR bmy_21667T0/1-605 HSIPHTLAEL SQVTEIGLSG NHLEKVPHLL CRWTSLHLLY LHNTGLRVLR BACU017831/1-560 HSIPHTLAEL SQVTEIGLSG NRLEKVPHLL CRWTSLHLLY LHNTGLRVLR 301 350 ENSBTAP00000008412/1-521 RSFRRLVNLQ FLDLSQNFLE HCPLQICSLK NLEVLALDDN KICQ------ ENSP00000342188/1-560 GSFRCLVNLR FLDLSQNHLH HCPLQICALK NLEVLGLDDN KIGQ------ ENSTTRP00000001769/1-563 RPFRRLVNLR FLDLSQNYLE RCPLQICELQ NLEILALDDN KICK------ bmy_21667T0/1-605 RPFRRLVNLR FLDLSQNYLE RCPLQICELQ NLEILALDDN KICQVPIPFL BACU017831/1-560 RPFRRLVNLR FLDLSQNYLE RCPLQICELQ NLEILALDDN KICQ------ 351 400 ENSBTAP00000008412/1-521 ---------- ---------- ---------- ---------L PSDFGSLSKL ENSP00000342188/1-560 ---------- ---------- ---------- ---------L PSELGSLSKL ENSTTRP00000001769/1-563 ---------- ---------- ---------- ---------L PSNFGLLSKL bmy_21667T0/1-605 AVTVLPPRAL PALNWCSSVS KHQEIRTEFM KSFKTAFQEL PSDFGLLSKL BACU017831/1-560 ---------- ---------- ---------- ---------L PSDFGLLSKL 401 450 ENSBTAP00000008412/1-521 KILGLTGNQF SSFPKEILSL ASLEKLYIGQ DEGAKLTHLP ECIKRLQNLK ENSP00000342188/1-560 KILGLTGNEF LSFPEEVLSL ASLEKLYIGQ DQGFKLTYVP EHIRKLQSLK ENSTTRP00000001769/1-563 KILGLTGNQF PSFPEEILSL ESLEKLYIGQ DQGAKLTHMP ECIRKLQSLK bmy_21667T0/1-605 KILGLTGNQF SSFPEEILSL ESLEKLYIGQ DQGAKLTHMP ECIRKLQSLK BACU017831/1-560 KILGLTGNQF SSFPEEILSL ESLEKLYIGQ DQGAKLTHMP ESIRKLQSLK 451 500 ENSBTAP00000008412/1-521 ELYIENNHLE YLPVSLGSMP NLEILDCHCN LIKQLPDAIC QAQALKELRF ENSP00000342188/1-560 ELYIENNHLE YLPVSLGSMP NLEVLDCRHN LLKQLPDAIC QAQALKELRL ENSTTRP00000001769/1-563 ELYVENNHLE YLPVSLGSMP NLEILDCRCN LIKQLPDAIC QAQALKELRL bmy_21667T0/1-605 ELYVENNYLK YLPVSLGSMP NLEILDCRCN LIKQLPDAIC QAQALKELRL BACU017831/1-560 ELYVENNYLK YLPVSLGSMP NLEILDCRCN LIKQLPDAIC QAQALKELRL 501 550 ENSBTAP00000008412/1-521 EDNLITYLPE NLDSLVNLEV LTLTGNPMEE PPMSVCAKGT EAVWEYLRER ENSP00000342188/1-560 EDNLLTHLPE NLDSLVNLKV LTLMDNPMEE PPKEVCAEGN EAIWKYLKEN ENSTTRP00000001769/1-563 EDNLITHLPE NLDSLVNLKV LTLMGNPMEE PPMTVCAEGA EAVRAYLKER bmy_21667T0/1-605 EDNLITHLPE NLDSLVNLKV LTLMGNPMEE PPMXACAEGA EAVWAYLKER BACU017831/1-560 EDNLITHLPE NLDSLVNLKV LTLMGNPMEE PPMIVCAEGA EAVWAYLKER 551 600 ENSBTAP00000008412/1-521 RNMKELATKI QAWWRGMMVR KGLGRFEELL KLQKKGRNSP KDKKGKKDVK ENSP00000342188/1-560 RNRNIMATKI QAWWRGTMVQ RGFGKFGELL KPQKKGKTSP KDKKGKKDVK ENSTTRP00000001769/1-563 RNMKTMATKI QAWWRGIMVR KGFGKFEDLL KLQKKGRNSP KDKKGKQDVK bmy_21667T0/1-605 RNMKTMATKI QAWWRGIMVR KGFGKFEDLL KLQKKGRYSP KDKKGKKDVK BACU017831/1-560 RNMKTMATKI QAWWRGIMVR KGFGKFEDLL KLQKKGRNSP KDKKGKKDVK 601 650 ENSBTAP00000008412/1-521 GKPFLAGLNK VAPNIYSEK ENSP00000342188/1-560 GKPGKG---- ------KKK ENSTTRP00000001769/1-563 GKSVKK---- ------NKK bmy_21667T0/1-605 GKSVKK---- ------NKK BACU017831/1-560 GKSVKK---- ------NKK