KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:16 2014 Check: 00 .. Name: ENSP00000306015/1-1261 Len: 1266 Check: 8513 Weight: 1.00 Name: ENSBTAP00000008434/1-1259 Len: 1266 Check: 2228 Weight: 1.00 Name: ENSTTRP00000014391/1-1261 Len: 1266 Check: 8990 Weight: 1.00 Name: bmy_07326T0/1-1070 Len: 1266 Check: 7904 Weight: 1.00 Name: BACU004223/1-1260 Len: 1266 Check: 9700 Weight: 1.00 // 1 50 ENSP00000306015/1-1261 -MGTGDFICI SMTGGAPWGF RLQGGKEQKQ PLQVAKIRNQ SKASGSGLCE ENSBTAP00000008434/1-1259 -MGTGDFICI SMTGGAPWGF RLQGGKEQQQ PLQVAKIRSQ SKASGSGLCE ENSTTRP00000014391/1-1261 -MGTGDFICI SMTGGAPWGF RLQGGKEQQQ PLQVAKIRSQ SKASGSGLCE bmy_07326T0/1-1070 MLYNSNY-CL ---------- ---------- LFHSTQIRSQ SKASGSGLCE BACU004223/1-1260 -MGTGDFICI SMTGGAPWGF RLQGGKEQQQ PLQVAKIRSQ SKASGSGLCE 51 100 ENSP00000306015/1-1261 GDEVVSINGN PCADLTYPEV IKLMESITDS LQMLIKRPSS GISEALISEN ENSBTAP00000008434/1-1259 GDEVVSINGN PCADLTYPEV IKLMESITDS LQMLVKRPSS GISETSISET ENSTTRP00000014391/1-1261 GDEVVSINGS PCADLTHPEV VKLMESITDS LQMLVKRPSS GISETLNSET bmy_07326T0/1-1070 GDEVVSINGN PCADLTYPEV IKLMESITDS LQMLVKRPSS GISETLNSET BACU004223/1-1260 GDEVVSINGN PCADLTYPEV IKLMESITDS LQMLVKRPSS GISETLNSET 101 150 ENSP00000306015/1-1261 ENKNLEHLTH GGYVESTTLQ IRPATKTQCT EFFLAPVKTE VPLAENQRSG ENSBTAP00000008434/1-1259 ENKNQENVTH EGYVESTTLQ IRPATKSQYR EFYIVPIKSG APLAEEQASG ENSTTRP00000014391/1-1261 ENKNHERLIH EGYVESTTLQ IRPATKSQYR EFYIAQVKSG APLAEDQASG bmy_07326T0/1-1070 ENKNHEHLIH EGYVXSTTLQ IRPATKSQYR EFYIAQVKSG APLAEDQASG BACU004223/1-1260 ENKNHEHLIH EGYVESTTLQ IRPATKSQYR EFYIAQVKSG APLAKDQASG 151 200 ENSP00000306015/1-1261 PDCAGSLKEE TGPSYQRAPQ MPDSQRGRVA EELILREKVE AVQPGPVVEL ENSBTAP00000008434/1-1259 AGFSGSIKEE TGL----APH TSDSESGRLP EEIILSEKAE AGRPGTVVEL ENSTTRP00000014391/1-1261 AGFSGSIKEE TGL----APH TYDSKSGRLP EEVILREKAE AGRPGTVVEL bmy_07326T0/1-1070 AGFSGSIKEE TGL----APH TSDSKSGCLP EEVILREKAE AGQPGTVVEL BACU004223/1-1260 AGFSGSIKEE TGL----APH TSDSKSGCLA EEVILREKAE AGQPGTVVEL 201 250 ENSP00000306015/1-1261 QLSLSQERHK GASGPLVALP GAEKSKSPDP DPNLSHDRIV HINSIPTNEK ENSBTAP00000008434/1-1259 QLSLSQERHR GKSAAVVTLL GAEKSMSPDP EPNLLHDGIV HINSAPTSEK ENSTTRP00000014391/1-1261 QLSLSQERHK RTSAPVVALL GTEKSKPPDQ DPNLQHDGIV HINSVPANEK bmy_07326T0/1-1070 QLTLSQERHK RTTAPVVALL GAEKSKSPDP DPNLQHDGII HINSVPTNEK BACU004223/1-1260 QLTLSQERHK RTSAPVVALL GAEKSKSPDP DPNLQHDGIV HINSVPANEK 251 300 ENSP00000306015/1-1261 ADPFLRSSKI IQISSGRELR VIQESEAGDA GLPRVEVILD CSDRQKTEGC ENSBTAP00000008434/1-1259 EDPPLRSSKT IQISSGQELR VIQGNEAADT GLPRVEVIFD CSDRQKTEGC ENSTTRP00000014391/1-1261 GEPCLRSSKI IQISSGQELR VIQGSEAGDT GLPRVEVIFD CSDRQKTEGS bmy_07326T0/1-1070 GEPSLRSSKI IQISSGQELK VIQGSEAGDT GLPRVEVIFD CSDRQKTEGS BACU004223/1-1260 GEPSLRSSKI IQISSGQELR VIQGSEAGDT GLPRVEVIFD CSDRQKTEES 301 350 ENSP00000306015/1-1261 RLQAGKECVD SPVEGGQSEA PPSLVSFAVS SEGTEQGEDP RSEKDHSRPH ENSBTAP00000008434/1-1259 RLQAAKGCVD SPVEGGQSEA PPSLVSFAVS SEGAEQGEDP RSERDHSRPH ENSTTRP00000014391/1-1261 RLQAGKGCVD SPVEGGQSEA PPSLVSFAVS SEGTEQGEDP RSERDHSRPH bmy_07326T0/1-1070 RLQAGKGCVD SPVEGGQLEA PPSLVSFAVS SEGTEHGEDP RSERDHSRPH BACU004223/1-1260 RLQAGKGCVD SPVEGGQLEA PPSLVSFAVS SEGTEQGEDP RSERDHSRPH 351 400 ENSP00000306015/1-1261 KHRARHARLR RSESLSEKQV KEAKSKCKSI ALLLTDAPNP NSKGVLMFKK ENSBTAP00000008434/1-1259 KHRARHARLR RSESLSEKQV KEAKSKCKSI ALLLTDAPNP NSKGVLMFKK ENSTTRP00000014391/1-1261 KHRARHARLR RSESQSEKQV KEAKSKCKSI ALLLTDAPNP NSKGVLMFKK bmy_07326T0/1-1070 KHRARHARLR RSESLSEKQV KEAKSKCKSI ALLLTDAPNP NSKGVLMFKK BACU004223/1-1260 KHRARHARLR RSESLSEKQV KEAKSKCKSI ALLLTDAPNP SSKGVLMFKK 401 450 ENSP00000306015/1-1261 RRRRARKYTL VSYGTGELER EAD-EEEEGD KEDTCEVAFL GASESEVDEE ENSBTAP00000008434/1-1259 RRRRARKYTL VSYGTGELER EAEEEEEEGD KEDPCEVAFL GASESEVDEE ENSTTRP00000014391/1-1261 RRRRARKYTL VSYGTGELDR EAEEEEEEGD KEDTCEVAFL GASESEVEEE bmy_07326T0/1-1070 RRRRARKYTL VSYGTGELDR EADEEEEEGD KEDTCEVAFL GASESEVEEE BACU004223/1-1260 RRQRARKYTL VSYGTGELGR EADEEEEEGD KEDTCEVAFL GASESEVEEE 451 500 ENSP00000306015/1-1261 LLSDVDDNTQ VVNFDWDSGL VDIEKKLNRG DKMEMLPDTT GKGALMFAKR ENSBTAP00000008434/1-1259 LLSDTEDNTQ VANFDWDSGL VDIEKKLSRG DKMEMLPDTT GKGALMFAKR ENSTTRP00000014391/1-1261 LLSDTDDNTQ VVNFDWDSGL VDIEKKLSRG DKMEMLPDTT GKGALMFAKR bmy_07326T0/1-1070 LLSDTDDNTQ VVNFDWDSGL VDIEKKLNRG DKMEMLPDTT GKGALMFAKR BACU004223/1-1260 LLSDTDDNTQ VVNFDWDSGL VDIEKKLNRG DKMEMLPDTT GKGALMFAKR 501 550 ENSP00000306015/1-1261 RERMDQITAQ KEEDKVGGTP SREQDAAQTD GLRTTTSYQR KEEESVRTQS ENSBTAP00000008434/1-1259 RERMDQITAQ KEEERAVGVP SREPDAAQTD GLRTVTSYQR KEEESVRVQS ENSTTRP00000014391/1-1261 RERMDQITAQ KEEERVSGMP SREPDAAQMD GLRTMISYQR KEEESVRVQR bmy_07326T0/1-1070 RERMDQITAQ KEEERVSGMP SREPDAAQTD GLRTMTSYQR KEEESVRVQS BACU004223/1-1260 RERMDQITAQ KEEERVSGMP SREPDAAQTD GLRTMTSYQR KEEESVRVQS 551 600 ENSP00000306015/1-1261 SVSKSYIEVS HGLGHVPQQN GFSGTSETAN IQRMVPMNRT AKPFPGSVNQ ENSBTAP00000008434/1-1259 SVSKSYTEVS HGLGHVPQQN GFTGVSETAE AQRMIPVNRT AKPFPGSGNQ ENSTTRP00000014391/1-1261 SASKSYIEVS RGLGNVPQQN GFTGLSETAE AQRMIPMNRT AKPFPGSVNQ bmy_07326T0/1-1070 SVSKSYIEVS HGLGHVPQQN GFTGVSETAE AQRMIPMNRT ARPFPGSVNQ BACU004223/1-1260 SVSKSYIEVS HGLGHVPQQN GFTGVSETAE AQRMIPMNRT AKPFPGSVNQ 601 650 ENSP00000306015/1-1261 PATPFSPTRN MTSPIADFPA PPPYSAVTPP PDAFSRGVSS PIAGPAQPPP ENSBTAP00000008434/1-1259 PATPFSPSRN VTSPIADFPA PPPYSAVTPP PETFSRAVSS PTAGPAPPPP ENSTTRP00000014391/1-1261 PATPFSPTRN MTSPIADFPA PPPYSAVTPP PETFSRAVSS PTAGPAQLPP bmy_07326T0/1-1070 PATPFSPTRN MTSPIADFPA PPPYSAVTPP PETFSRAVSS PTAGPPQPPP BACU004223/1-1260 PATPFSPTRN MTSPISDFPA PPPYSAVTPP PETFSRAVSS PTAGPPQPPP 651 700 ENSP00000306015/1-1261 WPQPAPWSQP AFYDSSERIA SRDERISVPA KRTGILQEAK RRSTTKPMFT ENSBTAP00000008434/1-1259 WPQPAPWSQP AFYDSSERIA SRDERIAVPA KRTGILQEAK RRSTTKPMFT ENSTTRP00000014391/1-1261 WPQPGPWSQP AFYDSSEQIA SRDERIAVPA KRTGILQEAK RRSTTKPMFT bmy_07326T0/1-1070 WPQPGPWSQP AFYDSSERIA SRDERIAVPA KRTGILQEAK RRSTTKPMFT BACU004223/1-1260 WPQPGPWSQP AFYDSSERIA SRDERIAVPA KRTGILQEAK RRSTTKPMFT 701 750 ENSP00000306015/1-1261 FKEPKVSPNP ELLSLLQNSE GKRGTGAGGD SGPEEDYLSL GAEACNFMQS ENSBTAP00000008434/1-1259 FKEPKVSPNP ELLSLLQNSE GKKGPGAGAD SGPEEDYLSL GAEACNFMQG ENSTTRP00000014391/1-1261 FKEPKVSPNP ELLSLLQNSE GKKGTGAGGD SGPEEDYLSL GAEACNFMQS bmy_07326T0/1-1070 FKEPKVSPNP ELLSLLQNSE GKKGTGAGGD SGPEEDYLSL GAEACNFMQS BACU004223/1-1260 FKEPKVSPNP ELLSLLQNSE GKKGTGAGGD SGPEEDYLSL GAEACNFMQS 751 800 ENSP00000306015/1-1261 SSAKQKTPPP VAPKPAVKSS SSQPVTPVSP VWSPGVAPTQ PPAFPTSNPS ENSBTAP00000008434/1-1259 SSAKQKTPPP VAPKPAVKSS SSQPVTPVSP LWSPGVAPAQ PPAFPTSNPS ENSTTRP00000014391/1-1261 PTAKQKTPPP VAPKPSVKSS SSQPVTPVSP VWSPGVAPAQ PPAFPTSNPS bmy_07326T0/1-1070 PTAKQKTPPP VAPKPSVKSS SSQPVTPVSP VWSPGVAPAQ PPAFPTSNPS BACU004223/1-1260 PTAKQKTPPP VAPKPSVKSS SSQPVTPVSP VWSPGVAPTQ PPAFPTSNPS 801 850 ENSP00000306015/1-1261 KGTVVSSIKI AQPSYPPARP ASTLNVAGPF KGPQAAVASQ NYTPKPTVST ENSBTAP00000008434/1-1259 HGTVVSSIKI AQPSYAPARP ASALNLAGPF KGPQAAVASR NYTPKPAAPT ENSTTRP00000014391/1-1261 HGTVVSSIKI AQPSYPTARP ASALSLAGPF KGPQASVASL NYTPKPSAPT bmy_07326T0/1-1070 HGTVVSSIKI AQPSYPPARP ASALNLAGPF KGPQASXASL NYTPKPAAPT BACU004223/1-1260 HGTVVSSIKI AQPSYPPARP ASALNLAGPF KGPQASVASL NYTPKPAAPT 851 900 ENSP00000306015/1-1261 PTVNAVQPGA VGPSNELPGM SGRGAQLFAK RQSRMEKYVV DSDTVQAHAA ENSBTAP00000008434/1-1259 PTVNTAHAGA VGPSNELPGM SGKGAQLFAK RQSRMEKYVV DSDTVQAHAA ENSTTRP00000014391/1-1261 PMVNTAHTGA MGPSNELPGM SGKGAQLFAK RQSRMKKYVV DSDTVQAHAA bmy_07326T0/1-1070 PTVNAAHPGA MGPSSELPGM SGKGAQLFAK RQSRMKKYVV DSDTVQAHAA BACU004223/1-1260 PTVNAAHTGA MGPSNELPGM SGKGAQLFAK RQSRMKKYVV DSDTVQAHAA 901 950 ENSP00000306015/1-1261 RAQSPTPSLP ASWKYSSNVR APPPVAYNPI HSPSYPLAAL KSQPSAAQPS ENSBTAP00000008434/1-1259 RAHSPTPSLP AGWKYSSNVR APPPVAYNPI HSPSYPPAAV KSQPSGLQAS ENSTTRP00000014391/1-1261 RAQSPTPSLP AGWKYSSNVR APPPVAYNPI HSPSYPLAAV KSQPSAPQAS bmy_07326T0/1-1070 RAQSPTPSLP AGWKYSSNVR APPPVAYNPI HSPSYPLAAV KSQPSAPQAS BACU004223/1-1260 RAQSPTPSLP AGWKYSSNVR APPPVAYNPI HSPSYPLAAV KSQPSAPQAS 951 1000 ENSP00000306015/1-1261 KMGKKKGKKP LNALDVMKHQ PYQLNASLFT FQPPDAKDGL PQKSSVKVNS ENSBTAP00000008434/1-1259 KTGKKKGKKP LNALDVMKHQ PYQLNASLFT FQPPDAKDGL PAKPSVKASS ENSTTRP00000014391/1-1261 KSSKKKGKKP LNALDVMKHQ PYQLNASLFT FQPPDAKDGL PAKSSVKVSS bmy_07326T0/1-1070 KTSKKKGKKP LNALDVMKHQ PYQLNASLFT FQPPDAKDGL PAKSSVKVSS BACU004223/1-1260 KTSKKKGKKP LNALDVMKHQ PYQLNASLFT FQPPDAKDGL PAKSSVKVSS 1001 1050 ENSP00000306015/1-1261 ALAMKQALPP RPVNAASPTN VQASSVYSVP AYTSPPSFFA EASSPVSASP ENSBTAP00000008434/1-1259 VPAAKQALPP RPVNAGSPTN VQASSVYSVP AYTSPPSFFA EVTSPVSASP ENSTTRP00000014391/1-1261 LPAMKQAIPP RPVNAGSPTN VQASSVYSVP AYSSQPSFFA EATSPVSASP bmy_07326T0/1-1070 LPAMKQAIPP QPVNAGSPAN VQASSVYSVP AYSSQPSFFA EATSPVSASP BACU004223/1-1260 LPVMKQAIPP QPVNAGSPAN VQASSVYSVP AYSSQPSFFA EATSPVSASP 1051 1100 ENSP00000306015/1-1261 VPVGIPTSPK QESASSSYFV APRPKFSAKK SGVTIQESGR SLSLPGRSVP ENSBTAP00000008434/1-1259 VPVAIPTSPK QESASTSYFV APRPKFSAKK SGVTV-QTGR SLSLPGRPVP ENSTTRP00000014391/1-1261 VPVAIPTSPK QESASTSYFV APRPKFSAKK SGVTVQQSGR SLSLPGRPVP bmy_07326T0/1-1070 VPVAIPTSPK QESASTSYFV APRPKFSAKK SGVTVQV--- ---------- BACU004223/1-1260 VPVAIPTSPK QESASTSYFV APRPKFSAKK SGVTV-QSGR SLSLPGRPVP 1101 1150 ENSP00000306015/1-1261 PPIS-TSPWV YQPTYSYSSK PTDGLEKANK RPTPWEAAAK SPLGLVDDAF ENSBTAP00000008434/1-1259 PAISATSPWL YQPAYSYTSK PTDGLEEAKK RLTPWEAAAK SPLGLVDEAF ENSTTRP00000014391/1-1261 PTISTTSPWV YQPAYSYSSK PTDGLEEANK RLTPGEAAAK SSFGLLDDAF bmy_07326T0/1-1070 --------W- ---------- ---------- ---------- ---------- BACU004223/1-1260 PTISTTSLWV YQPVYSYSSK PTDGLEEANK RLTPWEAAAK SSFGLVDDAF 1151 1200 ENSP00000306015/1-1261 QPRNIQESIV ANVVSAARRK VLPGPPEDWN ERLSYIPQTQ KAYMGSCGRQ ENSBTAP00000008434/1-1259 RPRNIQESIV ANVVSAARRK VLPGQSEEWN ARLSYVPQTQ KTSVGSFAKQ ENSTTRP00000014391/1-1261 RPRNIQESIM ANVVSAARRK VLPGPSEDWN ERLSYVPQTQ KANMGSFGRQ bmy_07326T0/1-1070 KPSVAEE--- ---------- ---------- ---------- ---------- BACU004223/1-1260 RPRNIQESIV ANVVSAARRK VLPGPSEDWN ERLSYVPQTQ KANMGSFGRQ 1201 1250 ENSP00000306015/1-1261 EYNVT--ANN NMSTTSQYGS QLPYAYYRQA SRNDSAIMSM ETRSDYCLPV ENSBTAP00000008434/1-1259 EYNVASLPNY SMP-NSQYGS QAPHAYYRQP SRNDSEIMSM ETRSDYCLSI ENSTTRP00000014391/1-1261 EYNVAFLPNN SMPTNSQHDS QVPYAYYRQP SRNDSEIMSM ETRSDYCVSV bmy_07326T0/1-1070 ---------- ---------- ---------- ---------- ---------- BACU004223/1-1260 EYNVAFLPNN SMPTNSQHGS QVPYAYYRQP SRNDSEIMSM ETRSDYCVSV 1251 1300 ENSP00000306015/1-1261 ADYNYNPHPR GWRRQT ENSBTAP00000008434/1-1259 TNCNYNPHPR GWRRQT ENSTTRP00000014391/1-1261 TNCNYNPHPR GWRRQT bmy_07326T0/1-1070 ---------- ------ BACU004223/1-1260 TSCNYNPHPR GWRRQT