KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:22 2014 Check: 00 .. Name: ENSTTRP00000002171/1-514 Len: 566 Check: 3888 Weight: 1.00 Name: ENSP00000394314/1-477 Len: 566 Check: 703 Weight: 1.00 Name: ENSBTAP00000008450/1-482 Len: 566 Check: 6620 Weight: 1.00 Name: bmy_11108T0/1-354 Len: 566 Check: 8719 Weight: 1.00 Name: BACU018609/1-491 Len: 566 Check: 4270 Weight: 1.00 // 1 50 ENSTTRP00000002171/1-514 MLRTAEQIGS PTIVELLYHT NPVCLPLLVY WTERDRMTEN MKECLAQTKA ENSP00000394314/1-477 ---------- ---------- ---------- ------MTEN MKECLAQTNA ENSBTAP00000008450/1-482 ---------- ---------- ---------- -RPQDRMTEN MKECLAQTKA bmy_11108T0/1-354 ---------- ---------- ---------- ---------- ---------- BACU018609/1-491 ---------- ---------- ---LPVLVPP SRPQDRMTEN MKECLAQTKA 51 100 ENSTTRP00000002171/1-514 AVGEMVTVVK TEVCSPLRDQ EYGQPCSRRP DPSAMEVEPR KLKGKRDLIM ENSP00000394314/1-477 AVGDMVTVVK TEVCSPLRDQ EYGQPCSRRP DSSAMEVEPK KLKGKRDLIV ENSBTAP00000008450/1-482 AVGEMVTVVK TEVCSPLRDQ ECGQPCSRRS DPSVMEVEPR KLKGKRDLIM bmy_11108T0/1-354 ---------- ---------- ---------- ---------- ---------- BACU018609/1-491 AVGEMVTVVK TEVCSPLRDQ EYGQPCSRRP DPSAMEVEPR KLKGKRDLIM 101 150 ENSTTRP00000002171/1-514 PKSFQQVDFW FCESCQEYFV DECPNHGPPV FVSDTPVPVG IPDRAALTIP ENSP00000394314/1-477 PKSFQQVDFW FCESCQEYFV DECPNHGPPV FVSDTPVPVG IPDRAALTIP ENSBTAP00000008450/1-482 PKSFQQVDFW FCESCQEYFV DECPNHGPPV FVSDTPVPVG IPDRAALTIP bmy_11108T0/1-354 --MLHHLTFW ---------- ---------- ---------- ---------- BACU018609/1-491 PKSFQQVDFW FCESCQEYFV DECPNHGPPV FVSDTPVPVG IPDRAALTIP 151 200 ENSTTRP00000002171/1-514 QGMEVVKEAS GENDVRCINE VIPKGHIFGP YEGQISTQDK SAGFFSWLXX ENSP00000394314/1-477 QGMEVVKDTS GESDVRCVNE VIPKGHIFGP YEGQISTQDK SAGFFSWLIV ENSBTAP00000008450/1-482 QGMEVVKEAS GENDVRCINE VIPKGRIFGP YEGQISTQDK SAGFFSWLIV bmy_11108T0/1-354 ---------- ---------- ---------- ---------- ---------- BACU018609/1-491 QGMEVVKEAS GENDVRCINE VIPKGHIFGP YEGQISTQDK SAGFFSWLIV 201 250 ENSTTRP00000002171/1-514 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000394314/1-477 DKNNRYKSID GSDETKANWM RYVVISREER EQNLLAFQHS ERIYFRACRD ENSBTAP00000008450/1-482 DKNNRYKSID GSDETKANWM RYVVISREER EQNLLAFQHS ERIYFRACRD bmy_11108T0/1-354 ---------- ---------- RYVVISREER EQNLLAFQHS ECIYFRACRD BACU018609/1-491 DKNNRYKSID GSDETKANWM RYVVISREER EQNLLAFQHS ECIYFRACRD 251 300 ENSTTRP00000002171/1-514 XXXXXXXXXW YSEDYMKRLH SISQETIHRN LARGEKKLQR EKSEQALDNP ENSP00000394314/1-477 IRPGEWLRVW YSEDYMKRLH SMSQETIHRN LARGEKRLQR EKSEQVLDNP ENSBTAP00000008450/1-482 IRPGERLRVW YSEDYMKRLH SMSQETIHRN LARGEKRLQK EKSEQALDNP bmy_11108T0/1-354 IRPGERLRVW YSEDYMKRLH SMSQETIHRN LARGEKKLQR EKSEQALDNP BACU018609/1-491 IRPGERLRVW YSEDYMKRLH SMSQETIHRN LARGEKKLQR EKSEQALDNP 301 350 ENSTTRP00000002171/1-514 EDLRGPLQLP VLRQGKSPYK RGFDEGDVHP QAKKKKIDLI FKDVLEASLE ENSP00000394314/1-477 EDLRGPIHLS VLRQGKSPYK RGFDEGDVHP QAKKKKIDLI FKDVLEASLE ENSBTAP00000008450/1-482 EDLRGPLQLP VLRQGKSPYK RGFDEGDVHP QAKKKKIDLI FKDVLEASLE bmy_11108T0/1-354 EDLRGPLQLP VLRQGKSPYK RGFDEGDVHP QAKKKKIDLI FKDVLEASLE BACU018609/1-491 EDLRGPLQLP VLRQGKSPYK RGFDEGDVHP QAKKKKIDLI FKDVLEASLE 351 400 ENSTTRP00000002171/1-514 SAKVEAHQLA LSTSLVIRKV PKYQNDAYSQ CAMTVSHGVQ NVTRTQGEGD ENSP00000394314/1-477 SAKVEAHQLA LSTSLVIRKV PKYQDDAYSQ CATTMTHGVQ NIGQTQGEGD ENSBTAP00000008450/1-482 SAKVEAHQLA LSTSLVIRKV PKRQNDAYGQ CAMTMSHGVQ NASRTQGDGD bmy_11108T0/1-354 SAKVEAHQLA LSTSLVIRKV PKYQNDAYSQ CAMTVSHGXQ NVSRTQGEGD BACU018609/1-491 SAKVEAHQLA LSTSLVIRKV PKYQNDAYSQ CAMTVSHGVQ NISRTQGEGD 401 450 ENSTTRP00000002171/1-514 WKIPQGVSKE AGPLEDEEEE PSSFKADSPA EASLASDPHE LPTTSFCPNC ENSP00000394314/1-477 WKVPQGVSKE PGQLEDEEEE PSSFKADSPA EASLASDPHE LPTTSFCPNC ENSBTAP00000008450/1-482 WKVPQGASKE AGPLEDEEEE PSSFKADSPA EASLASDPPE LPTTSFCPNC bmy_11108T0/1-354 WKIPQGASKE AGPVEDEEEE PSSFKADSPA EASLASDPHE LPTTSFCPNC BACU018609/1-491 WKIPQGASKE AGPVEDEEEE PSSFKADSPA EASLASDPHE LPTTSFCPNC 451 500 ENSTTRP00000002171/1-514 IRLKKNVREL QAELDMLKSG TLPEPPTLPA QVLELPEFSD PAGKLVWMRL ENSP00000394314/1-477 IRLKKKVREL QAELDMLKSG KLPEPPVLPP QVLELPEFSD PAGKLVWMRL ENSBTAP00000008450/1-482 IRLKKKVREL QAELDMLKSG TLPEPPTLPA QVLELPEFSD PAGKLVWVKL bmy_11108T0/1-354 IRLKKKVREL QAELDMLKSG TLPEPPTLPA QVLELPEFSD PAGKLVWMRL BACU018609/1-491 IRLKKKVREL QAELDMLKSG TLPEPPTLPA QVLELPEFSD PAGKLVWMRL 501 550 ENSTTRP00000002171/1-514 LSEGRARGGQ CGGG------ ---------- ---------- ---------- ENSP00000394314/1-477 LSEGRVRSGL CGG------- ---------- ---------- ---------- ENSBTAP00000008450/1-482 LSEGGTCGGQ CGG------- ---------- ---------- ---------- bmy_11108T0/1-354 LSEGRARGGQ RGGGPGAPQG SHLWGDLGRG AWRWVPAAAH ALGCLRQAAL BACU018609/1-491 LSEGRARSGQ RGGG------ ---------- ---------- ---------- 551 600 ENSTTRP00000002171/1-514 ---------- ------ ENSP00000394314/1-477 ---------- ------ ENSBTAP00000008450/1-482 ---------- ------ bmy_11108T0/1-354 QLRWGLWVLP LYPPRQ BACU018609/1-491 ---------- ------