KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:23 2014 Check: 00 .. Name: ENSTTRP00000015580/1-569 Len: 587 Check: 9540 Weight: 1.00 Name: bmy_20956T0/1-347 Len: 587 Check: 4357 Weight: 1.00 Name: BACU013851/1-275 Len: 587 Check: 2368 Weight: 1.00 Name: ENSP00000289416/1-586 Len: 587 Check: 472 Weight: 1.00 Name: ENSBTAP00000008455/1-586 Len: 587 Check: 7682 Weight: 1.00 // 1 50 ENSTTRP00000015580/1-569 RLALVTMQIL LRAKYFQCLA IPCSLRALHK DYRTVIPQDF SNYASMKQDF bmy_20956T0/1-347 ---------- ---------- ---------- ---------- ---------- BACU013851/1-275 ---------- ---------- ---------- ---------- -----MKQDF ENSP00000289416/1-586 MLARVTRKML RHAKCFQRLA IFGSVRALHK DNRTATPQNF SNYESMKQDF ENSBTAP00000008455/1-586 TLALVTMKIL LCAKYFQCPV IPGSMRALHK DYRTVTPQNF SNYESMKQDF 51 100 ENSTTRP00000015580/1-569 KLEIPEYFNF AKDVLDQWTN MEKAGKRPSN LAF-WINGNG EEVRWS---L bmy_20956T0/1-347 ---------- ---------- ---------- ---------- ---------- BACU013851/1-275 KLEIPEYFNF AKDVLDQWTN MEKAGKRPSN PAFWWINGNG EEVRW----L ENSP00000289416/1-586 KLGIPEYFNF AKDVLDQWTD KEKAGKKPSN PAFWWINRNG EEMRWSFEEL ENSBTAP00000008455/1-586 KLEIPEYFNF AKDVLDQWTS MEKAGKKPSN PAFWWTNGNG EEVRWSFEEL 101 150 ENSTTRP00000015580/1-569 GSFSRKFANI LTEACALQRG DRVIVILPRI PE-WLAYVAC LQTGTVL-PG bmy_20956T0/1-347 ---------- ---------- ---------- ---------- ---------- BACU013851/1-275 ASFSRKFANI LTDTCALQRG DRVIVILPRI PE-WDSFN-- --------PG ENSP00000289416/1-586 GSLSRKFANI LSEACSLQRG DRVILILPRV PEWWLANVAC LRTGTVLIPG ENSBTAP00000008455/1-586 GSLSRKFANI LTEACGLQRG DRVILLLPRI PEWWLANIAC LRTGTVLIPG 151 200 ENSTTRP00000015580/1-569 TTQMTQKDIL YRLASSKSKC IITNDVLAPA VGGVASKCEN LHSKIIVSQS bmy_20956T0/1-347 ---MTQKDIL YRLQSSKAKC IITNDVLAPA VDGVASRCEN LHCKLIVSQS BACU013851/1-275 TTQMTQKDIL YRLQSSKAKC ISTNDVLAPA VDGVASKCEN LHSKLIVSQS ENSP00000289416/1-586 TTQLTQKDIL YRLQSSKANC IITNDVLAPA VDAVASKCEN LHSKLIVSEN ENSBTAP00000008455/1-586 TTQMTQKDIL YRLQSSKAKC IITNEVLAPA VDAVASKCEN LHSKLIVSQS 201 250 ENSTTRP00000015580/1-569 PREGWENLKE MMKHASDNNT CVKTKHNETM AIFFTSGTSG SPKMTGHTHS bmy_20956T0/1-347 PREGWENLKE MM-------- ---------- -----NGTSG SPKMTGHTHS BACU013851/1-275 PREGWE---- --KHASDNNT CVKTKHNKMM ATFFTSGTSG SPKMTGHTHG ENSP00000289416/1-586 SREGWGNLKE LMKHASDSHT CVKTKHNEIM AIFFTSGTSG YPKMTAHTHS ENSBTAP00000008455/1-586 PREGWENLKE MMKHASDNHT CVKTKHNEMM AIFFTSGTSG YPKMTGHTHS 251 300 ENSTTRP00000015580/1-569 SFGLGLSING RFWLDLTPSD VMWNTSDTGW AKSAWSSVYS PRIQGACVLA bmy_20956T0/1-347 SFGLGLPING RFWLDLTPLD VMWNTSDTGW AKSAWSSVYS PWIQGACVFA BACU013851/1-275 SFGLGLSING RFWLDLTPSD VMWNTSDTVW AKSAWSSVYS PWIQGACVFA ENSP00000289416/1-586 SFGLGLSVNG RFWLDLTPSD VMWNTSDTGW AKSAWSSVFS PWIQGACVFT ENSBTAP00000008455/1-586 SFGLGLSING RFWLDLTPLD VMWNTSDTGW AKSAWSSVFS PWIQGACVFA 301 350 ENSTTRP00000015580/1-569 RYLPRFEPTS ILQTLRKFPI TVFCSAPIAD RILVQNDKTS -YKFKSLKHC bmy_20956T0/1-347 HYLPRFEPTS VLQTLCKFPI TVFCSAPTAD RILVQNDKTR NYKFKSLKHC BACU013851/1-275 HYLPRFEPTS VLQTLCKFPI TVFCSAPTAD RIPVQNDKTR ---------- ENSP00000289416/1-586 HHLPRFEPTS ILQTLSKYPI TVFCSAPTVY RMLVQNDITS -YKFKSLKHC ENSBTAP00000008455/1-586 HYLPRFEPTS ILQTLSKFPI TVFCSAPTAY RMLVQNDKAS -YKFKSLKHC 351 400 ENSTTRP00000015580/1-569 VSAGESVNSE VTEQWRNRTG LAIHEGYGQT ETVLICGNFK GMKIKPGSM- bmy_20956T0/1-347 VSAGESINSE VTEQWRNRTG LDIHEGYGQT ET-------- ---------- BACU013851/1-275 ---------- ---------- ---------- ---------- ---------- ENSP00000289416/1-586 VSAGEPITPD VTEKWRNKTG LDIYEGYGQT ETVLICGNFK GMKIKPGSMG ENSBTAP00000008455/1-586 VSAGEPINPE VTEQWRNRTG LDIYEGYGQT ETVLICGNFK GMKIKPGSMG 401 450 ENSTTRP00000015580/1-569 KPSPAFDVKI LDVNG----P ARQGDIGI-V LPNRPFRLFT HYVDNPTETA bmy_20956T0/1-347 ---------I LDVNGNVLPP GQEGDIGIRV LPNRPFCLFT HYVDNPTETA BACU013851/1-275 ---------- ---------- ---------- ---------- ---------- ENSP00000289416/1-586 KPSPAFDVKI VDVNGNVLPP GQEGDIGIQV LPNRPFGLFT HYVDNPSKTA ENSBTAP00000008455/1-586 KPSPAFDVKI LDVNGNVLPP GKEGDIGIRV RPNRPLGLFT HYIDNPTKTA 451 500 ENSTTRP00000015580/1-569 STL-GNFYIT GD-GYMDEDG RFWFVARVDD IILSSRY-IG PFEIESALTE bmy_20956T0/1-347 STLRGNFCIT GD-------G AIWMM---DI SRLFQEWMIS YYPLDCKYSE BACU013851/1-275 ---------- ---------- ---------- ---------- ---------- ENSP00000289416/1-586 STLRGNFYIT GDRGYMDKDG YFWFVARADD VILSSGYRIG PFEVENALNE ENSBTAP00000008455/1-586 STLRGNFYIT GDRGYMDEDG YFWFVSRADD IILSSGYRIG PFEVESALIE 501 550 ENSTTRP00000015580/1-569 HSALAELAVV SSPDPIRGEV VKAFIVLNPD -KSNDQEQLK KEIQEHVKRA bmy_20956T0/1-347 VNLLLTFTNS CH-------- MFCFPVTELD LQYLE----- ---------- BACU013851/1-275 ---------- ---------- ---------- ---------- ---------- ENSP00000289416/1-586 HPSVAESAVV SSPDPIRGEV VKAFVVLNPD YKSHDQEQLI KEIQEHVKKT ENSBTAP00000008455/1-586 HPAVAESAVV SSPDPIRGEV VKAFIVLNPD YKSHDQEQLK KEIQEHVKRN 551 600 ENSTTRP00000015580/1-569 TAPYKHPRKV EFTQELPKTI SGKI-RNELR KKEWETI bmy_20956T0/1-347 ----KYSSTV EFIQELPKTI SGKIKRNELR KKEWETI BACU013851/1-275 ---------- ---------- ---------- ------L ENSP00000289416/1-586 TAPYKYPRKV EFIQELPKTI SGKTKRNELR KKEWKTI ENSBTAP00000008455/1-586 TAPYKYPRKV EFIQELPKTI SGKIKRNELR KKEWETI