KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:28 2014 Check: 00 .. Name: ENSTTRP00000007679/1-423 Len: 432 Check: 1136 Weight: 1.00 Name: ENSP00000417161/1-404 Len: 432 Check: 1537 Weight: 1.00 Name: ENSBTAP00000008485/1-413 Len: 432 Check: 3946 Weight: 1.00 Name: bmy_10477T0/1-349 Len: 432 Check: 495 Weight: 1.00 Name: BACU009967/1-303 Len: 432 Check: 5816 Weight: 1.00 // 1 50 ENSTTRP00000007679/1-423 MTRAGRRGPG TPEPHPARTM ASPRLGTFCC ATRDAATQLV MSFQPRAFHA ENSP00000417161/1-404 ---------- ---------M ASPRLGTFCC PTRDAATQLV LSFQPRAFHA ENSBTAP00000008485/1-413 ---------- ---------M ASPRLGTFCC PTRDAATQLA LGFQPRAFHA bmy_10477T0/1-349 ---------- ---------L LSK------- ---------- ANLQCEKLNP BACU009967/1-303 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000007679/1-423 LCLGSGALHL ALGLLRLLPG RRPAGPGLLS ASP------P ATARILRAAA ENSP00000417161/1-404 LCLGSGGLRL ALGLLQLLPG RRPAGPGSPA TSP------P ASVRILRAAA ENSBTAP00000008485/1-413 LCLGSGALRL ALGLLQLRPG RRPAGPGIAS ASPATSARVP ASVRIVRAAT bmy_10477T0/1-349 TLLSKNGTAL K--------- ---------- ---------- ---------- BACU009967/1-303 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000007679/1-423 ACDLLGCLGI TVRSTVWLGF PSFVDDISAV NGTDVWPTAF CMGSAMWIQL ENSP00000417161/1-404 ACDLLGCLGM VIRSTVWLGF PNFVDSVSDM NHTEIWPAAF CVGSAMWIQL ENSBTAP00000008485/1-413 ACDLLGCLGI AVRSAVWLGF PSFVDDISAV NNTDVWPAVF CVGSALWIQL bmy_10477T0/1-349 --------GI TVRSTVWLGF PSFVDDISAV NGTDVWPAAF CMGSAMWIQL BACU009967/1-303 ---------- ---------- ---------M NGTDVWPATF CMGSAMWIQL 151 200 ENSTTRP00000007679/1-423 LYSACFWWLF CYAVDAYLVI RRSAGLSTIL LYHMMAWGLA ALLCVEGAFM ENSP00000417161/1-404 LYSACFWWLF CYAVDAYLVI RRSAGLSTIL LYHIMAWGLA TLLCVEGAAM ENSBTAP00000008485/1-413 LYSACFWWWF CYAVDAYLVI QRSAGQSTIL LYHLMTWGLA ALLSVEGALM bmy_10477T0/1-349 LYSACFWWLF CYAVDAYLVI RRSAGLSTIL LYHMMAWGPA ALLCVEGAFM BACU009967/1-303 LYSACFWWLF CYAVDAYLVI RRSAGLSTIL LYHMMAWGLA ALLCVEGAFM 201 250 ENSTTRP00000007679/1-423 LYYPSVAXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000417161/1-404 LYYPSVSRCE RGLDHAIPHY VTMYLPLLLV LVANPILFQK TVTAVASLLK ENSBTAP00000008485/1-413 LYYPSMARCE RGLEHAIPHY ITTYLPLLLV LVGNPILFRK TVTAVASLLK bmy_10477T0/1-349 LYYPSVARCE RGLEHAIPHY VTTYLPLLLV LVANPILFRK TVTAVASLLK BACU009967/1-303 LYYPSVARCE RGPEHAIPHY VTTYLPLLLV LVANPILFRK TVTAVASLLK 251 300 ENSTTRP00000007679/1-423 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000417161/1-404 GRQGIYTENE RRMGAVIKIR FFKIMLVLII CWLSNIINES LLFYLEMQTD ENSBTAP00000008485/1-413 GRQGIYTENE RRMGARIKTR FFKIMLVFIV CWFSNVINES LLFYLEMQPD bmy_10477T0/1-349 GRQGVYTENE RRMGDVIKTR FFKIMLVFII CWVSNIINES LLFYLEMQPD BACU009967/1-303 GRQGVYTENE RRMGDVIKTR FFKIMLVFII CWVSNIINES LLFYLEMQPD 301 350 ENSTTRP00000007679/1-423 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000417161/1-404 INGGSLKPVR TAAKTTWFIM GILNPAQGFL LSLAFYGWTG CSLGFQSPRK ENSBTAP00000008485/1-413 INSSSLKQVR NAAKTTWFMM GILNPAQGFL LSLAFYGWTG CRLTLPGPSK bmy_10477T0/1-349 INGASLKQVR NAAKTTWFMM GILNPAQGFL LSLAFYGWTG CRPAFRAPRK BACU009967/1-303 ISGASLRQVR NAAKTTWFMM GILNPAQGFL LSLAFHGWTG CRPAFRAPRK 351 400 ENSTTRP00000007679/1-423 XXXXXXXXXX XXXXXXXXX- --XXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000417161/1-404 EIQWESLTTS AAEGAHPSP- --LMPHENPA SGKVSQVGGQ TSDEALSMLS ENSBTAP00000008485/1-413 EIQWDSMTTS ATEGAPPSPG GPQEPGEGPA PKKELPGGTH TSDEALSLLS bmy_10477T0/1-349 EIQWESMSTS AAERGPPSPK GSREARESPA AGKEVRAGGH TSDEALSLLS BACU009967/1-303 EIQWESMSTS AAERGPPSPK GSREARESRA AGKEVRAGGH TSDEALSLLS 401 450 ENSTTRP00000007679/1-423 XXSDSSTIEI HIASVSRNGK ETESVPKAQG DL ENSP00000417161/1-404 EGSDASTIEI HTASESCNKN EGDPALPTHG DL ENSBTAP00000008485/1-413 EGSGGSTIEI HIASGSRGGK APDSLPKVQG TP bmy_10477T0/1-349 EGSDASTIEI HIASVSRNGK ETESVPKAQG DL BACU009967/1-303 EGSDASTIEI HVASVSRNGK ETESVPKAQG DL