KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:31 2014 Check: 00 .. Name: ENSP00000254630/1-689 Len: 692 Check: 9797 Weight: 1.00 Name: ENSBTAP00000008498/1-688 Len: 692 Check: 4072 Weight: 1.00 Name: ENSTTRP00000008154/1-692 Len: 692 Check: 9019 Weight: 1.00 Name: bmy_17877T0/1-537 Len: 692 Check: 1709 Weight: 1.00 Name: BACU005898/1-688 Len: 692 Check: 4776 Weight: 1.00 // 1 50 ENSP00000254630/1-689 MAVVSAVRWL GLRSRLGQPL TGRRAGLCEQ ARSCRFYSGS ATLSKVEGTD ENSBTAP00000008498/1-688 MASVASARWL RVSCGLCVPL TARRAGPCGR TPSSRFYSGS AAVPKDEGAD ENSTTRP00000008154/1-692 MAAVHSARWL RISRGLCLPL TGRRAGVCGR APSSRFYSGS AAVPEVEGAG bmy_17877T0/1-537 MAAVSSARWL RVRRGLCLPL TGRRAGLCGR APSSR----- ---------- BACU005898/1-688 MAAVSSARWL RVRRGLCLPL TGRRAGLCGR APSSRFYSGS AAVPEVEGAD 51 100 ENSP00000254630/1-689 VTGIEEVVIP KKKTWDKVAV LQALASTVNR DTTAVPYVFQ DDPYLMPASS ENSBTAP00000008498/1-688 IAGTEEVVIP KKKTWDKVAV LQALASTVHR DTTAAPYAFQ DDPYLIPTSS ENSTTRP00000008154/1-692 ATGTEEVVIP KKKTWDKVAV LQALASTVHR DATAAPYAFQ DDPYLIPTSS bmy_17877T0/1-537 ---------- -----DKVAV LQALGSTVHR DAXAAPYVFQ DDPYLXPTSS BACU005898/1-688 ATGTGEVVIP KKKTWDKVAV LQALASTVHR DATAAPYAFQ DDPYLIPTSS 101 150 ENSP00000254630/1-689 LESRSFLLAK KSGENVAKFI INSYPKYFQK DIAEPHIPCL MPEYFEPQIK ENSBTAP00000008498/1-688 VESHSFLLAK KSGENAAKFI INSYPKYFQK DIAEPHIPCL MPEYFEPQIE ENSTTRP00000008154/1-692 MESHSFLLAK KSGENAAKFI INSYPKYFQK DIAEPHIPCF MPEYFEPQIE bmy_17877T0/1-537 MESHSFLLAK KSGENAAKFV INSYPKYFQK DIAEPHIPCF MPEYFEPQIE BACU005898/1-688 MESHSFLLAK KSGENAAKFV INSYPKYFQK DIAEPHIPCF MPEYFEPQIE 151 200 ENSP00000254630/1-689 DISEAALKER IELRKVKASV DMFDQLLQAG TTVSLETTNS LLDLLCYYGD ENSBTAP00000008498/1-688 EISEAALQER IKLKKVKASV DIFDQLLQAG TTVSLETTNS LLDLLCYYGN ENSTTRP00000008154/1-692 DISEAALQER IKLRKVKASV DMFDQLLQAX XXXXXXXXXX XXXXXXXXXX bmy_17877T0/1-537 DISEAALQER IKLRKVKASV DMFDQLLQAG TTVSLETTNR LLDLLCYCGN BACU005898/1-688 GISEAALQER IKLRKVKASV DMFDQLLQTG TTVSLETANC LLDLLCYCGN 201 250 ENSP00000254630/1-689 QEPSTDYHFQ QTGQSEALEE E---NDETSR RKAGHQFGVT WRAKNNAERI ENSBTAP00000008498/1-688 QEPSTNYNFQ QHEQTEELEE AEEGDNMKSK KKAGHQLGVT WRARNHAERI ENSTTRP00000008154/1-692 XXXXXXXXXX XXXXXXXXEE ATEGSNEKPK KKAGHQLGVT WRAKNNAERI bmy_17877T0/1-537 QEPSTBYNFQ QREQAEE--- ---------- ---------- ---------- BACU005898/1-688 QEPSTNYNFQ QREQAEELEE ATEGNNEKPK KKAGHQLGVT WRAKNNAERI 251 300 ENSP00000254630/1-689 FSLMPEKNEH SYCTMIRGMV KHRAYEQALN LYTELLNNRL HADVYTFNAL ENSBTAP00000008498/1-688 FALMPEKNAH SYCTMIRGMV KHRAHTQALS MYTELLNNRL RADVHTFNSL ENSTTRP00000008154/1-692 FALMPEKNAH SYCTMIRGMV KHRAPTQALN LYTELLNNRL RADVHTFNSL bmy_17877T0/1-537 ---------- ---------- ---------- ---------- ---------- BACU005898/1-688 FALMPEKNAH SYCTMIRGMV KHRAPTQALN LYTELLNNRL RADVHTFNSL 301 350 ENSP00000254630/1-689 IEATVCAINE KFEEKWSKIL ELLRHMVAQK VKPNLQTFNT ILKCLRRFHV ENSBTAP00000008498/1-688 IEATALVVNA KFEEKWNNIL DLLKQMVAQN VKPNLQTFNT ILKCLRRFYA ENSTTRP00000008154/1-692 IEATAFVANE KSEEKWNNIL DLLKQMVAQN VKPNLQTFNT ILKCLRRFHA bmy_17877T0/1-537 ---------- ---------L DLLKQMVAQN VKPNLQTFNT ILKCLRRFHA BACU005898/1-688 IEATALVVNE KFEEKWNNIL DLLKQMVAQN VKPNLQTFNT ILKCLRRFHA 351 400 ENSP00000254630/1-689 FARSPALQVL REMKAIGIEP SLATYHHIIR LFDQPGDPLK RSSFIIYDIM ENSBTAP00000008498/1-688 FGKLPALQTF REMKAIGIEP SLATYHHIIQ LFYQHESPSK GSSLIIYDIM ENSTTRP00000008154/1-692 IGKLPALQTL REMKAIGIEP SLATYHYIIQ LFYQHENPSK GSSLIIYDIM bmy_17877T0/1-537 FGKLPALQTL REMKAIGIES ---------- -------PSK GSSLIIYDIM BACU005898/1-688 FGKLPALQTL REMKAIGIEP SLATYHYIIQ LFYQHESPSK GSSLIIYDIM 401 450 ENSP00000254630/1-689 NELMGKRFSP KDPDDDKFFQ SAMSICSSLR DLELAYQVHG LLKTGDNWKF ENSBTAP00000008498/1-688 DEITGKTFSP KDPDDDMFFQ SAMRVCSSLR DLELAYQVHG LLNTGDNRKF ENSTTRP00000008154/1-692 NELMGKKFSP KDPDDDMFFQ SAMRVCSSLR DLELAYQVHD LLNTGDNRKF bmy_17877T0/1-537 NELMGKKFSP KDPDDDMFFQ SAMRVCSSLR DLELGYQVHD LLNTGDNRKF BACU005898/1-688 NELMGKKFSP KDPDDDMFFQ SAMRVCSSLR DLELAYQVHD LLNTGDNRKF 451 500 ENSP00000254630/1-689 IGPDQHRNFY YSKFFDLICL MEQIDVTLKW YEDLIPSAYF PHSQTMIHLL ENSBTAP00000008498/1-688 IGPDPRRNFY YSKFFSLLCL MEQIDVTLKW YKDLIPSVFF PHSQTLIDLL ENSTTRP00000008154/1-692 IGPDHRRYFY YSKFFGLLCL MEQIDVTLKW YKDLIPSVFF PHSQTLIDLL bmy_17877T0/1-537 IGPDHRRNFY YSKFFGLLCL MEQIDVTLKW YKDLIPSVFF PHSQTLIDLL BACU005898/1-688 IGPDHRRNFY YSKFFGLLCL MEQIDVTLKW YKDLIPSVFF PHSQTLIDLL 501 550 ENSP00000254630/1-689 QALDVANRLE VIPKIWKDSK EYGHTFRSDL REEILMLMAR DKHPPELQVA ENSBTAP00000008498/1-688 QALDVANRLE MIPQIWKDSK EYGHTFRSDL KEEILMLMAR DQHPPELQAA ENSTTRP00000008154/1-692 QALDVANRLE LIPQIWKDSK EYGHTFRRDI KEEILTLMAR DRHPPXLQVA bmy_17877T0/1-537 QALDVANRLE LIPQIWKDSK EYGHTFRRDL KEEILMLMAR DRHPPE--VA BACU005898/1-688 QALDVANRLE LIPQIWKDSK EYGHTFRRDL KEEILMLMAR DRHPPELQVA 551 600 ENSP00000254630/1-689 FADCAADIKS AYESQPIRQT AQDWPATSLN CIAILFLRAG RTQEAWKMLG ENSBTAP00000008498/1-688 FADCAADIKS TYESQDARQT ASEWPANSLN YIAILFLRAG RTQEAWKMLG ENSTTRP00000008154/1-692 FADCAADIKS TYESQDARQT APSWLASSLN HIAVLFLRAG RTQEAWKMLG bmy_17877T0/1-537 FADCAADIKS TYESQDARQT APSWLASSLN YIAVLFLRAG RTQEAWKMLG BACU005898/1-688 FADCAADIKS TYESQDARQT APSWLASSLN YIAVLFLRAG RTQEAWKMLG 601 650 ENSP00000254630/1-689 LFRKHNKIPR SELLNELMDS AKVSNSPSQA IEVVELASAF SLPICEGLTQ ENSBTAP00000008498/1-688 LFRKHNKIPR NELLNEFMDS AKASSSPAQA VEVVKLANSF SLPICEGLTQ ENSTTRP00000008154/1-692 LFRKHNKIPG NELLNEFMDS AKASGSPAQA IEIVKLAGAF SLPICESLTQ bmy_17877T0/1-537 LFRKHNKIPR NELLNEFMGS AKASGSPAQA IEIVKLAGAF SLPICESLTQ BACU005898/1-688 LFRTHNKIPR SELLNEFMGS AKASGSPAQA IEIVKLAGAF SLPICESLTQ 651 700 ENSP00000254630/1-689 RVMSDFAINQ EQKEALSNLT ALTSDSDTDS SSDSDSDTSE GK ENSBTAP00000008498/1-688 RLTADFTLSQ EQKEALGDLT ALT----SDS ESDSDSDTSK DK ENSTTRP00000008154/1-692 RLMADFTLSQ EQKEALGDLT ALTSDSDSDS SSDSDNDVGE SK bmy_17877T0/1-537 RLMADFTLSQ EQKEALGDLT ALT----SDS SSDSDNDVGE GK BACU005898/1-688 TLMADFTLSQ EQKEALGDLT ALT----SDS SSDSDNDVGE GK