KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:31 2014 Check: 00 .. Name: ENSP00000379667/1-310 Len: 337 Check: 3487 Weight: 1.00 Name: ENSBTAP00000008501/1-311 Len: 337 Check: 2590 Weight: 1.00 Name: bmy_21964T0/1-281 Len: 337 Check: 9341 Weight: 1.00 Name: BACU009070/1-307 Len: 337 Check: 5819 Weight: 1.00 Name: ENSTTRP00000006217/1-310 Len: 337 Check: 2133 Weight: 1.00 // 1 50 ENSP00000379667/1-310 MLVVEVANGR SLVWGAEAVQ ALRERLGVGG RTVGALPRGP RQNSRLGLPL ENSBTAP00000008501/1-311 MLVVEVANGR SLVWGAEAVQ ALRERLGVGG RTVGALPRGP RQNSRLGLPL bmy_21964T0/1-281 ---------- ---------- ---------- ---------- ---------- BACU009070/1-307 MLVVEVANGR SLVWGAEAVQ ALRERLGVGG RTVGALPRGP RQNSRLGLPL ENSTTRP00000006217/1-310 MLVVEVANGR SLVWGAEAVQ ALRERLGVGG RTVGALPRGP RQNSRLGLPL 51 100 ENSP00000379667/1-310 LLMPEEARLL AEIGAVTLVS APRPDSRHHS L----ALTSF KRQQEESFQE ENSBTAP00000008501/1-311 LLMPEEARLL AEIGAVTLVS APRPDPRQHS L----ALASF KRQQEQGFQE bmy_21964T0/1-281 --MPEEARLL AEIGAVTLVS APRPDPRQHS L----ALASF KRQQEQGFQE BACU009070/1-307 LLMPEEARLL AEIGAVTLVS APRPDPRQHS LAGGQALASF KRQQEQGFQE ENSTTRP00000006217/1-310 LLMPEEARLL AEIGAVTLVS APRPDPRQHS L----ALASF KRQQEQGFQE 101 150 ENSP00000379667/1-310 QSALAAEARE TRRQELLEKI TEGQAAKKQK LEQASGASSS QEAGSSQAAK ENSBTAP00000008501/1-311 QSTLAAEARE TRRQELLEKI TEGQAAKKLK LEQESGTSGS QEAGGKQAAE bmy_21964T0/1-281 QSALAAEARE TRRQELLEKI AEGQAAKKQK LEQKSGTSGS QEAGGNQAAE BACU009070/1-307 QSALAAEARE TRRQELLEKI AEGQAAKKQK LEQKSGTSGS QEAGGNQSAE ENSTTRP00000006217/1-310 QSALAAEARE TRRQELLEKI AEGQAAKKQK LEQKSGTSGS QEAGGNQAAE 151 200 ENSP00000379667/1-310 EDETSDGQAS GEQEEA--GP SSSQAGPSNG VAPLPRSALL VQLATARPRP ENSBTAP00000008501/1-311 ENEASAGQAA GEHEEAHEG- SSPQPGPSNG VAPLPKSALL IQLATARPRP bmy_21964T0/1-281 ENEASAGQAA GEHEEAGEGS SSPQPGPSNG VAPLPRSALL IQLATARPRP BACU009070/1-307 ENEASAGQAA GEREEA---- -----GPSNG VAPLPRSALL IQLATARPRP ENSTTRP00000006217/1-310 ENEASAGQAA GEHEEA--GS SSPQPGPSNG VAPLPRSALL IQLATARPRP 201 250 ENSP00000379667/1-310 VKARPLDWRV QSKDWPHAGR PAHELRYSIY RDLWERGFFL SAAGKFGGDF ENSBTAP00000008501/1-311 IKARPLDWRV QSKDWPHAGR PAHELRYSIY RDLWERGFFL SAAGKFGGDF bmy_21964T0/1-281 IKARPLDWRV QSKDWPHAGR PAHELRYSIY RDLWERGFFL SAAGKFGGDF BACU009070/1-307 IKARPLDWRV QSKDWPHAGR PAHELRYSIY RDLWERGFFL SAAGKFGGDF ENSTTRP00000006217/1-310 IKARPLDWRV QSKDWPHAGR PAHELRYSIY RDLWERGFFL SAAGKFGGDF 251 300 ENSP00000379667/1-310 LVYPG----- ---------- ------DPLR FHAHYIAQCW APEDTIPLQD ENSBTAP00000008501/1-311 LVYPG----- ---------- ------DPLR FHAHYIAQCW APEDPIPLQD bmy_21964T0/1-281 LVYPASETVE GQETLGNPCS FEGQFSDPLR FHAHYIAQCW APGDPIPLQD BACU009070/1-307 LVYPG----- ---------- ------DPLR FHAHYIAQCW APGDPIPLQD ENSTTRP00000006217/1-310 LVYPG----- ---------- ------DPLR FHAHYIAQCW APGDPIPLQD 301 350 ENSP00000379667/1-310 LVAAGRLGTS VRKTLLLCSP QPDGKVVYTS LQWASLQ ENSBTAP00000008501/1-311 LVSAGRLGTS VRKTLLLCSP QPDGKVVYTS LQWASLQ bmy_21964T0/1-281 LVSAGRLGTS VRKTLLLCSP QPDGKVVYTS LQWASLQ BACU009070/1-307 LVSAGRLGTS VRKTLLLCSP QPDGKVVYTS LQWASLQ ENSTTRP00000006217/1-310 LVSAGRLGTS VRKTLLLCSP QPDGKVVYTS LQWASLQ