KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:35:33 2014 Check: 00 .. Name: ENSP00000414022/1-696 Len: 931 Check: 8059 Weight: 1.00 Name: ENSBTAP00000008511/1-901 Len: 931 Check: 5349 Weight: 1.00 Name: bmy_10006T0/1-706 Len: 931 Check: 2587 Weight: 1.00 Name: ENSTTRP00000002992/1-575 Len: 931 Check: 8338 Weight: 1.00 // 1 50 ENSP00000414022/1-696 ---------- ---------- ---------- ---------M PTQDGQLRRP ENSBTAP00000008511/1-901 MENFQYSVQL SDQDWAEFSA AAEECGLLQA GLASGDEPLS SDTDQRDSRG bmy_10006T0/1-706 MENFQYSIQL SEQDWAEFAA AAEECGLLQA GLASGXELLS SDTDQRDSSG ENSTTRP00000002992/1-575 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000414022/1-696 ARPPGP---- ---------- ---------- -------RAW ---------- ENSBTAP00000008511/1-901 SSPPGPSPFL EGQLTPGGSS WPSFEEEDKA ATRQLVSRSW HEPMLAPEAG bmy_10006T0/1-706 SSPPGPPPLP EGQLAPRGSD WPGSEEEDEA ATRQLVNRSW REPVLAPEAG ENSTTRP00000002992/1-575 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000414022/1-696 ---------- -----MEPRG GGSSQFSSCP GPASSGDQMQ RLLQGPAPR- ENSBTAP00000008511/1-901 QQTPSTSAQS EARLSLSPGA TPLVQGSSLP GPVSSRDEMQ RLLRGPAPRG bmy_10006T0/1-706 QQMPSMSVRS EARPSLSPGA APLVQGSSLL GPVSSRGERQ RLLQGPAPRG ENSTTRP00000002992/1-575 ---------- -----MEPGS S---QGSSLP GPVSSRGERE RLLQGAAPRG 151 200 ENSP00000414022/1-696 ----PPGEPP GSPKSPGHST GSQRPPDSPG APPRSPSRKK RRAVGAKGGG ENSBTAP00000008511/1-901 PAPTPTGEPA GSPESPVHSA APQRSPGSPG APPRSPGRKK RRTAGTKAGG bmy_10006T0/1-706 LAPTPTREPA RSPDSPGRSA APQRPPGSPG ALLRSPSRKK RRAAGTKAGG ENSTTRP00000002992/1-575 LAPTLTGEPA RSPDSTGCSA APQRPPGSPG APLRSPSQKK RRAAGTKAGG 201 250 ENSP00000414022/1-696 HTG--ASASA QTGSPLLPAA SPE------- ---------T AKLMAKAGQE ENSBTAP00000008511/1-901 RSGGPGPAPT QLDSPLLTEA KPEDSFGPAG SRGKGLPAGA AKQTAGTG-- bmy_10006T0/1-706 RLGDPGPAPT QLGSLLLTEA GAEDGLGLAG SRGKGLRVGT TGQTAGAGQI ENSTTRP00000002992/1-575 RLGDPGPAPT QLGSLLLTEA GAE------- ---------T TRQTAGAGQI 251 300 ENSP00000414022/1-696 ELGPGPAGAP EPGPRSPVQE DRPGPGLGLS TPVPVTEQGT DQIRTPRRAK ENSBTAP00000008511/1-901 ---PESAGAP E-------QV AGQGPGVDLS TSVSTTEQGT DRLGMSPRAD bmy_10006T0/1-706 ELGPESPEAP E-------QV ARQGPGVALS TSVPTTEQGT DLIGMTLRTE ENSTTRP00000002992/1-575 ELGPESPEAP E-------QV ARRGPGVDLS TSVPTTEQGT DLIGTTLRTE 301 350 ENSP00000414022/1-696 LHTVSTTVWE ALPDVSRAKS DMAVSTPASE PQPD------ -----RDMAV ENSBTAP00000008511/1-901 PCAASTSDPG APLDVTI-KS DVALSTPASE PQPDKPQSTP AFKPQPDEPQ bmy_10006T0/1-706 PRTMSTLDLE ASLDVTMAKS DVALSTPTSE PQPE------ ---------- ENSTTRP00000002992/1-575 PRTTSTLDLE ASAGVTMANP DVALSTPTSE PQPD------ ---------- 351 400 ENSP00000414022/1-696 STPASEPQSD RDMAVSTPAS EPQ------- --PDTDMAVS TPASEPQPDR ENSBTAP00000008511/1-901 STPAFKPQPD ESQSTSAFNA QPNEPQSTPT FSPQPDEPQS TPAFKPQPDE bmy_10006T0/1-706 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002992/1-575 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000414022/1-696 ---------- ---------- ---------- -------DMA VSIPASKPQS ENSBTAP00000008511/1-901 PQSTSAFNAQ PNEPQSTLAF SPQPDEPQST PAFKPQPDEP QSTPAFNVQP bmy_10006T0/1-706 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002992/1-575 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000414022/1-696 DTAVSTPASE PQSSVALSTP ISKPQLDTD- ---------- VAVSTPASKH ENSBTAP00000008511/1-901 NEPQSTPAFS PQPNEPQSTP AFKPQPDEPQ STPAFNTQPN EPQSTPTFKP bmy_10006T0/1-706 ---------- ---------- ---------- ---------- EPLSTPASKP ENSTTRP00000002992/1-575 ---------- ---------- ---------- ---------- EPLSTPASEP 501 550 ENSP00000414022/1-696 GLDVALPTAG PVAKLEVASS PPVSEAVPRM ---------T ESSGLVSTPV ENSBTAP00000008511/1-901 RLDVDQLMPG PVVQPEVDSS MPASKAVPCT ALPHLVLEAG SDVGVSTPPA bmy_10006T0/1-706 RLDVDLLTPG PVVQLEVDSS TPVSKAIPRT ALPHLVSEAG SDVGV-STPA ENSTTRP00000002992/1-575 RLDVDLLVPG PGVQLEVGSS TPVSKAIPRT --------AG SDVGV-STPA 551 600 ENSP00000414022/1-696 PRADAAGLAW PPTRRAGPDV VEMEAVVS-- ---------- --------EP ENSBTAP00000008511/1-901 PTPQA----- ------GPDM VEAEVVPVAK LGLSPVRSLE GHQQNPRGEP bmy_10006T0/1-706 PIPEA----- ------GPDM VELEVAPVAK LGLSPIWSPE GDRQKPRGEP ENSTTRP00000002992/1-575 PIPEA----- ------GPDV AELEVAGF-- ---------- --------EP 601 650 ENSP00000414022/1-696 SAGAPGCCSG APALGLTQVP RKKKVRFSVA GPSPNKPGSG QASA---RPS ENSBTAP00000008511/1-901 STDAPGHHTG EPPLGPIQAP KKKKVRFSMA MPSSEEPGSG EVSGPLSPAT bmy_10006T0/1-706 SAGAPGHHTG EPPPGPIQAP KKKKVRFSMA VPSPEEPGSG EASGPAFPAT ENSTTRP00000002992/1-575 SAGAPGHRTG EPPLGPIQAP KKKKVRFSMA VPSPEEPGSG EASA---QPS 651 700 ENSP00000414022/1-696 APQTATGAHG GPGAWEAVAV GPRPHQPRIL KHLPRPPPSA VTRVGPGSSF ENSBTAP00000008511/1-901 APRMASGGHR GSGAWDSVAV GPRSPQPRIL KHLPPPAPSA SMGPGRRSCF bmy_10006T0/1-706 APRTAAGGRR ASAAWDAVAV GPRTPQPRIL KHLPPPAPSA SAGPGPSCCF ENSTTRP00000002992/1-575 APRTAAGGRR ASGAWDTVAV GPRTPQPRIP KHLPPPAPSA SAGPGRSCSF 701 750 ENSP00000414022/1-696 AVTLPEAYEF FFCDTIEENE E--AEAAAAG QDPAGVQWPD MCEFFFPDVG ENSBTAP00000008511/1-901 AVTLPEAYDF FFCDTIEEED EEAEGAAEAA QAPAEVQWPD VCEFFFQESQ bmy_10006T0/1-706 AVTLPEAYEF FFCDTIEEEE EDVEEEAEAS QALAEVQWPD VCEFFFQDGQ ENSTTRP00000002992/1-575 AVTLPEAYEF FLCDTIEEED EDIEEEAEAS QALAEVQWPD MCEFFFQDGQ 751 800 ENSP00000414022/1-696 AQRSRRRG-- SPEPLPRADP VPAPIPGDPV PISIPEVYEH FFFGEDRLEG ENSBTAP00000008511/1-901 IQRSRHQEGR SQAPLLKAGS VPAPPPGDPM PISIPEAYEH -FLEEDRSGG bmy_10006T0/1-706 AQRSRHWEGH AQAPPLQAEP LPAPPPGDPI PISIPEAYEH -FLWEDTSGG ENSTTRP00000002992/1-575 TQRSRHQEGH SQAPPLQAEP LPAPPPGDPT PISIPEAYEH -FLGEDVSGG 801 850 ENSP00000414022/1-696 VLGPAVPLPL QALEPPRSAS EGAGPGTPL- -KPAVVERLH LALRRAGELR ENSBTAP00000008511/1-901 TLGPAALLQM QATEPSRSVL WGVGTGAPPE SSPATVEQLT LAIREAVAPR bmy_10006T0/1-706 TLGLAALLQM QATEPPRSVP GEVGTGTPPG PSPASAEQLT PAIRQAGVCC ENSTTRP00000002992/1-575 MLGPAVLLQM QATEPPRSVP WDVGTGTPPG PSPDSAKQLA PAIRQAGVPG 851 900 ENSP00000414022/1-696 G-----PVPS FAFSQNDMCL VFVAFATWAV RTSDPHTPDA WKTALLANVG ENSBTAP00000008511/1-901 G-----PLTS FTFSQKDMCM VFVAFATWAV RTSDLHAPDA WKTVLLANIG bmy_10006T0/1-706 GDPMACPGPG YTLSR----- ---------- ---ELGQEGH W--------G ENSTTRP00000002992/1-575 G-----PLTS FTFSQNDMCL VFVAFATWAV RTSDLHAPDA WKTVLLANIG 901 950 ENSP00000414022/1-696 TISAIRYFRR QVGQGRRSHS P------SPS S ENSBTAP00000008511/1-901 TISAIRYFRR QVERGRHSRS RSPSPSSSPS P bmy_10006T0/1-706 GASQ------ ---------- -------DPG L ENSTTRP00000002992/1-575 TISAIRYFRW QVGRGRR--- -------SPS S