KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:35:34 2014 Check: 00 .. Name: ENSTTRP00000004524/1-1803 Len: 1886 Check: 7832 Weight: 1.00 Name: ENSBTAP00000008516/1-1859 Len: 1886 Check: 8372 Weight: 1.00 Name: bmy_20426T0/1-1097 Len: 1886 Check: 3484 Weight: 1.00 Name: BACU019647/1-1843 Len: 1886 Check: 8817 Weight: 1.00 // 1 50 ENSTTRP00000004524/1-1803 MAASELYTKF ARVWIPDPEE VWKSAELLKD YKPGDKVLLL HLEDGKDLEY ENSBTAP00000008516/1-1859 IRQSQILIKF ARVWIPDPEE VWKSAELLKD YKPGDKVLLL QLEDGKDLEY bmy_20426T0/1-1097 ---------- ---------- ---------- ---------- ---------- BACU019647/1-1843 ---------F ARVWIPDPEE VWKSAELLKD YKPGDKVLLL HLEDGKDLEY 51 100 ENSTTRP00000004524/1-1803 RLDPKTKELP HLRNPDILVG ENDLTALSYL HEPAVLHNLR VRFIDSKLIY ENSBTAP00000008516/1-1859 RLDPKTKELP HLRNPDILVG ENDLTALSYL HEPAVLHNLR VRFIDSKLIY bmy_20426T0/1-1097 ---------- ---------- ---------- ---------- ---------- BACU019647/1-1843 RLDPKTEELP HLRNPDILVG ENDLTALSYL HEPAVLHNLR VRFIDSKLIY 101 150 ENSTTRP00000004524/1-1803 TYCGIVLVAI NPYEQLPIYG EDIINAYSGQ NMGDMDPHIF AVAEEAYKQM ENSBTAP00000008516/1-1859 TYCGIVLVAI NPYEQLPIYG EDIINAYSGQ NMGDMDPHIF AVAEEAYKQM bmy_20426T0/1-1097 ---------- ---------- ---------- ---------- ---------- BACU019647/1-1843 TYCGIVLVAI NPYEQLPIYG EDIINAYSGQ NMGDMDPHIF AVAEEAYKQM 151 200 ENSTTRP00000004524/1-1803 AXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000008516/1-1859 ARDERNQSII VSGESGAGKT VSAKYAMRYF ATVSGSASEA NVEEKVLASN bmy_20426T0/1-1097 ---------- ---------- ---------- ---------- ---------- BACU019647/1-1843 ARDERNQSII VSGESGAGKT VSAKYAMRYF ATVSGSASEA NVEEKVLASN 201 250 ENSTTRP00000004524/1-1803 XXXXSIGNAK TTRNDNSSRF GKYIEIGFDK RHRIIGANMR TYLLEKSRVV ENSBTAP00000008516/1-1859 PIMESIGNAK TTRNDNSSRF GKYIEIGFDK RYRIIGANMR TYLLEKSRVV bmy_20426T0/1-1097 ---------- ---------- ---------- ---------- ---------- BACU019647/1-1843 PIMESIGNAK TTRNDNSSRF GKYIEIGFDK RYRIIGANMR TYLLEKSRVV 251 300 ENSTTRP00000004524/1-1803 FQXXXXXXXX XXXXXXXXXX XXXXXXXXXX DANNFHYTKQ GGSPVIEGVD ENSBTAP00000008516/1-1859 FQAEEERNYH IFYQLCASAD LSEFKVLRLG DANNFHYTNQ GGSPVIEGVD bmy_20426T0/1-1097 ---------- ---------- ---------- ---------- ---------- BACU019647/1-1843 FQAEEERNYH IFYQLCASAK LPEFKMLRLG DANNFHYTKQ GGSPVIEGVD 301 350 ENSTTRP00000004524/1-1803 DAKEMAQTRQ ACTLLGISES YQMGIFRILA GILHLGNVGF MSRDSDSCTI ENSBTAP00000008516/1-1859 DAKEMAHTRQ ACTLLGISES HQMGIFRILA GILHLGNVVF MSRDSDSCTI bmy_20426T0/1-1097 ---------- ---------- ---------- ---------- ---------- BACU019647/1-1843 DATEMAQTRQ ACTLLGISES YQMGIFRILA GILHLGNVGF TSRDSDSCTI 351 400 ENSTTRP00000004524/1-1803 PPRHEPLSIF CDLMAVDFEE MCHWLCHRKL ATAAETYIKP ISKLQATNAR ENSBTAP00000008516/1-1859 PPKHEPLSIF CDLMGVDFEE LCHWLCHRKL ATATETYIKP ISKLQATNAR bmy_20426T0/1-1097 ---------- ---MAVDFEE MCHWLCHRKL ATATETYIKP ISKLQATNAR BACU019647/1-1843 PPKHEPLSIF CDLMAVDFEE MCHWLCHRKL ATATETYIKP ISKLQATNAR 401 450 ENSTTRP00000004524/1-1803 DALAKHIYAK LFNWIVDHVN QVLHSAVKQH SFIGVLDIYG FETFEINSFE ENSBTAP00000008516/1-1859 DALAKHIYAK LFNWIVDHVN QALHSAVKQH SFIGVLDIYG FETFEINSFE bmy_20426T0/1-1097 DALAKHIYAK LFNWIVDHVN QVLHSAVKQH SFIGVLDIYG FETFEINSFE BACU019647/1-1843 DALAKHIYAK LFNWIVDHVN QVLHSAVKQH SFIGVLDIYG FETFEINSFE 451 500 ENSTTRP00000004524/1-1803 QFCINYANEK LQQQFNMHVF KLEQEEYMKE QIPWTLIDFY DNQPCINLIE ENSBTAP00000008516/1-1859 QFCINYANEK LQQQFNMHVF KLEQEEYMKE QIPWTLIDFY DNQPCINLIE bmy_20426T0/1-1097 QFCINYANEK LQQQFNMHVF KLEQEEYMKE QIPWTLIDFY DNQPCINLIE BACU019647/1-1843 QFCINYANEK LQQQFNMHVF KLEQEEYMKE QIPWTLIDFY DNQPCINLIE 501 550 ENSTTRP00000004524/1-1803 SKLGILDLLD EECRMPKGTD DTWAQKLYNT HLNKCALFEK PRLSNKAFII ENSBTAP00000008516/1-1859 SKLGILDLLD EECKMPKGTD DTWAQKLYNT HLNKCALFEK PRLSNKAFII bmy_20426T0/1-1097 SKLGILDLLD EECKMPKGTD DTWAQKLYNT HLNKCALFEK PRLSNKAFII BACU019647/1-1843 SKLGILDLLD EECRMPKGTD DTWAQKLYNT HLNKCVLFEK PRLSNKAFII 551 600 ENSTTRP00000004524/1-1803 QHFADKXXXX XXXXXXXXXX XXXXXXXXXX XSSKFKMLPE LFQDDEKAIS ENSBTAP00000008516/1-1859 QHFADKVEYQ CEGFLEKNKD TVFEEQIKVL KSSKFKMLPE LFQDDEKAIS bmy_20426T0/1-1097 QHFAD----- ---------- ---------- ---KFKMLPE LFQDDEKAIS BACU019647/1-1843 QHFADKVEYQ CEGFLEKNKD TVFEEQIKVL KSSKFKMLPE LFQDDEKAMS 601 650 ENSTTRP00000004524/1-1803 PSSATSSGRT LLTRTPAKPT KGRPGQAAKE HKKTVGHQFR NSLHLLMETL ENSBTAP00000008516/1-1859 PTSATSSGRT PLTRTLSKPT KGRPGQTAKE HKKTVGHQFR NSLHLLMETL bmy_20426T0/1-1097 PSSATSSGRT PLSRTPAKPT KGRPGQAAKE HKKTVGHQFR NSLHLLMETL BACU019647/1-1843 PSSATSSGRT PLSRTPAKPA KGRPGQAAKE HKKTVGHQFR NSLHLLMETL 651 700 ENSTTRP00000004524/1-1803 NATTPHYVRC IKPNDFKFPF TFDEKRAVQQ LRACGVLETI RISAAGFPSR ENSBTAP00000008516/1-1859 NATTPHYVRC IKPNDFKFPF TFDEKRAVQQ LRACGVLETI RISAAGFPSR bmy_20426T0/1-1097 NATTPHYVRC IKPNDFKFPF T--------- ---------- ---------- BACU019647/1-1843 NATTPHYVRC IKPNDFKFPF TFDEKRAVQQ LRACGVLETI RISAAGFPSR 701 750 ENSTTRP00000004524/1-1803 WTYQEFFSRY RVLMKQKDVL SERKQTCKNV LEKL--IKDK DKYQFGKTKI ENSBTAP00000008516/1-1859 WTYQEFFSRY RVLMKQKDVL SDRKQTCKNV LEKLIVIQDK DKYQFGKTKI bmy_20426T0/1-1097 WTYQEFFSRY RVLMKQKDVL SERKQTCKNV LEKL--IPDK DKYQFGKTKI BACU019647/1-1843 WTYQEFFSRY RVLMKQKDVL SERKQTCKNV LEKL--ILDK DKYQFGKTKI 751 800 ENSTTRP00000004524/1-1803 FFRAGQVAYL EKLRADKLRA ACIRIQKTIR GWLLRKKFLR MRKAAITVQR ENSBTAP00000008516/1-1859 FFRAGQVAYL EKLRADKLRA ACIRIQKTIR GWLLRKKYLR MRKAAITVQR bmy_20426T0/1-1097 FFRAGQVAYL EKLRADKLRA ACIRIQKTIR GWLLRKKYLR MRKAAITVQR BACU019647/1-1843 FFRAGQVAYL EKLRADKLRA ACIRIQKTIR GWLLRKKYLR MRKAAITVQR 801 850 ENSTTRP00000004524/1-1803 YVRGHQARCY AKFLRRTKAA TIIQKYWRMY VIRRRYKIWR TATIVLQSYL ENSBTAP00000008516/1-1859 YVRGHQARCY AKFLRRTKAA TIIQKYWRMY VARRRYKIMR TATIVLQSYL bmy_20426T0/1-1097 YARGHQARCY AKFLRRTKAA TIIQKYWRMY VIRRRYKIRR TATIVLQSYL BACU019647/1-1843 YARGHQARCY AKFLRRTKAA TIIQKYWRMY VIRRRYKIRR TATIVLQSYL 851 900 ENSTTRP00000004524/1-1803 RGYLARNRYR KILREHKAVI IQKWVRGWLA RTYYKRSTHA IIYLQCCFRR ENSBTAP00000008516/1-1859 RGYLARNRYH KILREHKAVI IQKWVRGWLA RTCYRRSIHA IIYLQCCFRR bmy_20426T0/1-1097 XGYLARNRYR KILREHKAVI IQKWVRGWLA RTYYKRSMHA IIYLQCCFRR BACU019647/1-1843 RGYLARNRYR KILREHKAVI IQKWVRGWLA RTYYKRSMHA IIYLQCCFRR 901 950 ENSTTRP00000004524/1-1803 MMAKRELKKL KIEARSVERY KKLHIGMENK IMQLQRKVDE QNKDYKCLME ENSBTAP00000008516/1-1859 MMAKRELKKL KIEARSVERY KKLHIGMENK IMQLQRKVDE QNKDYKCLME bmy_20426T0/1-1097 MMAKRELKKL KIEARSVERY KKLHIGMENK IMQLQRKVDE QNKDYKCLME BACU019647/1-1843 MMAKRELKKL KIEARSVERY KKLHIGMENK IMQLQRKVDE QNKDYKCLME 951 1000 ENSTTRP00000004524/1-1803 KLTNLEGIYN SETEKLRSDL ERLQLSEEEA KIATGRVLSL QEEIAKLRKD ENSBTAP00000008516/1-1859 KLTNLEGIYN SETEKLRSDL ERLQLSEEEA KIATGRVLSL QEEIAKLRKD bmy_20426T0/1-1097 KLTNLEGIYN SETEKLRSDL ERLQLSEEEA KIATGRVLSL QEEIAKLRKD BACU019647/1-1843 KLTNLEGIYN SETEKLRSDL ERLHLSEEEA KIATGRVLSL QEEIAKLRKD 1001 1050 ENSTTRP00000004524/1-1803 LEQTQCEKKS IEECADRYKQ ETEQLVSNLK EENTLLKQEK EALNHLIVEQ ENSBTAP00000008516/1-1859 LEQTQSEKKS IEEHADRYKQ ETEQLVSNLK EENTLLKQEK EVLNHRIVEQ bmy_20426T0/1-1097 LEQTQCEKKS IEECADRYKQ ETEQ------ ---------- ---------- BACU019647/1-1843 LEQAQCEKKS IEECADRYKQ ETEQLVSNLK EENTLLKQEK EALNHLIVEQ 1051 1100 ENSTTRP00000004524/1-1803 AKEMTETMEK KLIEETKQLE LDLNDERLRY QNLLNEFSRL EERYDDLKEE ENSBTAP00000008516/1-1859 AKEMTETMEK KLVEETKQLE LDLNDERLRY QNLLNEFSRL EERYDDLKEE bmy_20426T0/1-1097 ---------- ---------- ---------- ---------- ---------- BACU019647/1-1843 AKEMTETMEK KLIEETKQLE LDLNDERLRY QNLLNEFSRL EERYDDLKEE 1101 1150 ENSTTRP00000004524/1-1803 MTLMINVPKP GHKRTDSTHS SNESEYTFSS EIAETEDIPS RTEEPSEKKV ENSBTAP00000008516/1-1859 MTLMVNVPKP GHKRTDSTHS SNESEYTFSS EIAETEDIPS RTEEPSEKKV bmy_20426T0/1-1097 -----NVPKP GHRRTDSTHS SNESECTFSS EIAETEDIPS RTE------- BACU019647/1-1843 MTLMVNVPKP GHRRTDSTHS SNESECTFSS EIAETEDIPS RTEEPSEKKV 1151 1200 ENSTTRP00000004524/1-1803 PLDMSLFLKL QKRVTELEQE KQVMQDELDR KEEQVLRSKA KEEERPQIRG ENSBTAP00000008516/1-1859 PLDMSLFLKL QKRVTELEQE KQVMQDELDR KEEQVLRSKA KEEERPQIRG bmy_20426T0/1-1097 ---------L QKRVTELEQE KQVMQDELDH KEEQVLRSKA KEDERPQIRG BACU019647/1-1843 PLDMSLFLKL QKRVTELEQE KQVMQDELDH KEEQVLRSKA KEEERPQIRG 1201 1250 ENSTTRP00000004524/1-1803 AELEYESLKR QELESENKKL KNELNELRKA LSEKSAPEVT APGAPAYRVL ENSBTAP00000008516/1-1859 AELEYESLKR QELESENKKL KNELNELRKA LSEKSAPEVT APGAPAYRVL bmy_20426T0/1-1097 AELEYESLKR QELESENKKL KNELNELRKA LSEKSAPEVT APGAPAYRVL BACU019647/1-1843 AELEYESLKR QELESENKKL KNELNELRKA LSEKSAPEVT APGAPAYRVL 1251 1300 ENSTTRP00000004524/1-1803 MEQLTSVSEE LEVRKEEVLI LRSQLVSQKE AIQPKLYENT MTDSTILLED ENSBTAP00000008516/1-1859 MEQLTSVSEE LDVRKEEVLI LRSQLVSQKE AIQPKDDKNT MTDSTILLED bmy_20426T0/1-1097 MEQLTSVSEE LDVRKEEVLI LRSQLMSQKE AIQPK---NT MTDSTILLED BACU019647/1-1843 MEQLTSVSEE LDVRKEEVLI LRSQLMSQKE AIQPK---NT MTDSTILLED 1301 1350 ENSTTRP00000004524/1-1803 VQKMKDKGEI AQAYIGLKET NRSSAMDGHE LNEDGELLLV YEGLKQANRL ENSBTAP00000008516/1-1859 VQKMKDKGEI AQAYIGLKET NR-------- ---------- ---------L bmy_20426T0/1-1097 VQKMKDKGEI AQAYIGLKET NR-------- ---------- ---------- BACU019647/1-1843 VQKMKDKGEI AQAYIGLKET NRSSAMDGHE LNEDGELLLV YEGLKQANRL 1351 1400 ENSTTRP00000004524/1-1803 LESQLQSQKR SHENEAEALR GEIQSLKEEN NRQQQLLAQN LQLPPEARIE ENSBTAP00000008516/1-1859 LESQLQSQKR SHENEAEALR GEIQSLKEEN NRQQQLLAQN LQLPPEARIE bmy_20426T0/1-1097 --------KP FYWNSSTFYK HLI--VVEST GKDST----- ---------- BACU019647/1-1843 LESQLQSQKR SHENEAEALR GEIQSLKEEN NRQQQLLAQN LQLPPEARIE 1401 1450 ENSTTRP00000004524/1-1803 ASLQHEITRL TNENLYFEEL YADDLKKYQS YGISVCNRMI DLMEQLEKQD ENSBTAP00000008516/1-1859 ASLQHEITRL TNENLYFEEL YADDPKKYQS YRISLYKRMI DLMEQLEKQD bmy_20426T0/1-1097 ---------- ---------- ---------- ---------- DLMEQLEKQD BACU019647/1-1843 ASLQHEITRL TNENL----- ---------- ---------- DLMEQLEKQD 1451 1500 ENSTTRP00000004524/1-1803 KTVRKLKKQL KVFAKKIGEL E----VGQME NISPGQIIDE PIRPVNIPRK ENSBTAP00000008516/1-1859 KTVRKLKKQL KVFAKKIGEL EVSNEVGQME NISPGQIIDE PIRPVNIPRK bmy_20426T0/1-1097 KTVRKLKKQL KVFAKKIGEL E--------- ---------- ---------- BACU019647/1-1843 KTVRKLKKQL KVFAKKIGEL EGTLARTHLT PGRAGSIGNE EFKLCFCISK 1501 1550 ENSTTRP00000004524/1-1803 EKDFQGMLEY KKEDEQKLVK NLILELKPRG VAVNLIPGLP AYILFMCVRH ENSBTAP00000008516/1-1859 EKDFQGMLEY KKEDEQKLVK NLILELKPRG VAVNLIPGLP AYILFMCVRH bmy_20426T0/1-1097 ---------- ---------- ----ELKPRG VAVNLIPGLP AYILFMCVRH BACU019647/1-1843 SIPREDFQSY IR----LFFL FSFLELKPRG VAVNLIPGLP AYILFMCVRH 1551 1600 ENSTTRP00000004524/1-1803 ADYLNDDQKV RSLLTSTINS IKKVLKKRGD DFETVSFWLS NTCRFLHCLK ENSBTAP00000008516/1-1859 ADYLNDDQKV RSLLTSTINS IKKVLKKRGD DFETVSFWLS NTCRFLHCLK bmy_20426T0/1-1097 ADYLNDDQ-- ---------- -----KKRGD DFETVSFWLS NTCRFLHCLK BACU019647/1-1843 ADYLNDDQKV RSLLTSTINS IKKVLKKRGD DFETVSFWLS NTCRFLHCLK 1601 1650 ENSTTRP00000004524/1-1803 QYSGEEGFMK HNTSRQNEHC LTNFDLAEYR QVLSDLAIQI YQQLVRVLEN ENSBTAP00000008516/1-1859 QYSGEEGFMK HNTSRQNEHC LTNFDLAEYR QVLSDLAIQI YQQLVRVLEN bmy_20426T0/1-1097 QYSGEEGFMK HNTSRQNEHC LTNFDLAEYR QVLSDLAIQI YQQLVRV--- BACU019647/1-1843 QYSGEEGFMK HNTSRQNEHC LTNFDLAEYR QVLSDLAIQI YQQLVRVLEN 1651 1700 ENSTTRP00000004524/1-1803 ILQPMIVSGM LEHETIQGVS GVKPTGLRKR TSSIADEGTY TLDSILRQLN ENSBTAP00000008516/1-1859 ILQPMIVSGM LEHETIQGVS GVKPTGLRKR TSSIADEGTY TLDSILRQLN bmy_20426T0/1-1097 ---------- ---------- ---------- ---------- ---------- BACU019647/1-1843 ILQPMIVSGM LEHETIQGVS GVKPTGLRKR TSSIADEGTY TLDSILRQLN 1701 1750 ENSTTRP00000004524/1-1803 SFHSVMCQHG MDPELIKQVV KQMFYIVGAV TLNNLLLRKD MCSWSKGMQI ENSBTAP00000008516/1-1859 SFHSVMCQHG MDPELIKQVV KQMFYIVGAV TLNNLLLRKD MCSWSKGMQI bmy_20426T0/1-1097 ---------- ---------- ---------- ---------- ---------- BACU019647/1-1843 SFHSVMCQHG MDPELIKQVV KQMFYIVGAV TLNNLLLRKD MCSWSKGMQI 1751 1800 ENSTTRP00000004524/1-1803 RYNVSQLEEW LRDKNLMNSG AKETLEPLIQ AAQLLQVKKK TDDDAEAICS ENSBTAP00000008516/1-1859 RYNVSQLEEW LRDKNLMNSG AKETLEPLIQ AAQLLQVKKK TDDDAEAICS bmy_20426T0/1-1097 -YNVSQLEEW LRDKNLMNSG AKETLEPLIQ AAQLLQVKKK TDDDAEAICS BACU019647/1-1843 RYNVSQLEEW LRDKNLMNSG AKETLEPLIQ AAQLLQVKKK TDDDAEAICS 1801 1850 ENSTTRP00000004524/1-1803 MCNALTTAQ- ---------- ---------- ---------- ---------- ENSBTAP00000008516/1-1859 MCNALTTAQI VKVLNLYTPV NEFEERVSVS FIRTIQMRLR DRKDSPQLLM bmy_20426T0/1-1097 MCNALTTAQI VKVLNLYTPV NEFEERVSVS FIRTIQMRLR DRKDSPQLLM BACU019647/1-1843 MCNALTTAQI VKVLNLYTPV NEFEERVSVS FIRTIQMRLR DRKDSPQLLM 1851 1900 ENSTTRP00000004524/1-1803 ---------- ---------- ---------- ------ ENSBTAP00000008516/1-1859 DAKHIFPVTF PFNPSSLALE TIQIPASLGL GFISRV bmy_20426T0/1-1097 DAKHIFPVTF PFNPSSLALE TIQIPASLGL GFISRV BACU019647/1-1843 DAKHIFPVTF PFNPSSLALE TIQIPASLGL GFISRV