KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:37 2014 Check: 00 .. Name: ENSTTRP00000004870/1-759 Len: 867 Check: 1308 Weight: 1.00 Name: bmy_08296T0/1-622 Len: 867 Check: 9260 Weight: 1.00 Name: ENSP00000347464/1-759 Len: 867 Check: 3694 Weight: 1.00 Name: BACU008386/1-689 Len: 867 Check: 4874 Weight: 1.00 Name: ENSBTAP00000008526/1-759 Len: 867 Check: 4444 Weight: 1.00 // 1 50 ENSTTRP00000004870/1-759 MSKRLRSSEV CADCSGPDPS WASVNRGTFI CDECCSVHRS LGRHISQVRH bmy_08296T0/1-622 MSKRLRSSEV CADCSGPDPS WASVNRGTFI CDECCSVHRS LGRHISQ--- ENSP00000347464/1-759 MSKRLRSSEV CADCSGPDPS WASVNRGTFL CDECCSVHRS LGRHISQVRH BACU008386/1-689 MSKRLRSSE- ---------- ---------- ---------- ---------- ENSBTAP00000008526/1-759 MSKRLRSSEV CADCSGPDPS WASVNRGTFI CDECCSVHRS LGRHISQVRH 51 100 ENSTTRP00000004870/1-759 LKHTPWPPTL LQMVETLYNN GANSIWEHSL LDPASLISGR RKANPQDKVH bmy_08296T0/1-622 ---------- --MVETLYNN GANSIWEHSL LDPASLISGR RKANPQDKVH ENSP00000347464/1-759 LKHTPWPPTL LQMVETLYNN GANSIWEHSL LDPASIMSGR RKANPQDKVH BACU008386/1-689 ---------- --MVETLYNN GANSIWEHSL LDPASLISGR RKANPQDKVH ENSBTAP00000008526/1-759 LKHTPWPPTL LQMVETLYNN GANSIWEHSL LDPTSIMSGR RKANPQDKVH 101 150 ENSTTRP00000004870/1-759 PNKAEFIRAK YQMLAFVHRL PCRDDDSVTA KDLSKQLHSS VRTGNLETCL bmy_08296T0/1-622 PNKAEFIRAK YQMLAFVHRL PCRDDDSVTA KDLSKQLHSS ---------- ENSP00000347464/1-759 PNKAEFIRAK YQMLAFVHRL PCRDDDSVTA KDLSKQLHSS VRTGNLETCL BACU008386/1-689 PNKAEFIRAK YQMLAFVHRL PCRDDDSVTA KDLSK----- ---------- ENSBTAP00000008526/1-759 PNKAEFIRAK YQMLAFVHRL PCRDDDSVTA KDLSKQLHSS VRTGNLETCL 151 200 ENSTTRP00000004870/1-759 RLLSLGAQAN FFHPEKGNTP LHVASKAGQI LQAELLAVYG ADPGTQDASG bmy_08296T0/1-622 ---------- ----EKGNTP LHVASKAGQI LQAELLAVYG ADPGTQDASG ENSP00000347464/1-759 RLLSLGAQAN FFHPEKGNTP LHVASKAGQI LQAELLAVYG ADPGTQDSSG BACU008386/1-689 ---------- ----EKGNTP LHVASKAGQI LQAELLAVYG ADPGTQDASG ENSBTAP00000008526/1-759 RLLSLGAQAN FFHPEKGNTP LHVASKAGQI LQAELLAVYG ADPGTQDSSG 201 250 ENSTTRP00000004870/1-759 KTPVDYARQG GHHELAERLV EIQYELTDRL AFYLCGRKPD HKNGQHFIIP bmy_08296T0/1-622 KTPVDYARQG GHHELAERLV EIQYELTDRL AFYLCGRKPD HKNGQHFIIP ENSP00000347464/1-759 KTPVDYARQG GHHELAERLV EIQYELTDRL AFYLCGRKPD HKNGQHFIIP BACU008386/1-689 KTPVDYARQG GHHELAERLV EIQYELTDRL AFYLCGRKPD HKNGQHFIIP ENSBTAP00000008526/1-759 KTPVDYARQG GHHELAERLV EIQYELTDRL AFYLCGRKPD HKNGQHFIIP 251 300 ENSTTRP00000004870/1-759 QMAD------ ---------- --SSLDLSEL AKAAKKKLQS LSNHLFEELA bmy_08296T0/1-622 QMAD------ ---------- --SSLDLSEL AKAAKKKLQS LSNHLFEELA ENSP00000347464/1-759 QMAD------ ---------- --SSLDLSEL AKAAKKKLQS LSNHLFEELA BACU008386/1-689 QMADRAHENG FIYLLISFVH FLSSLDLSEL AKAAKKKLQS LSNHLFEELA ENSBTAP00000008526/1-759 QMAD------ ---------- --SSLDLSEL AKAAKKKLQS LSNHLFEELA 301 350 ENSTTRP00000004870/1-759 MDVYDEVDRR ETDAVWLATQ NHSTLVTETT VVPFLPVNPE YSSTRNQ--- bmy_08296T0/1-622 MDVYDEVDRR ETDAVWLATQ NHSTLVTETT VVPFLP---- ---------- ENSP00000347464/1-759 MDVYDEVDRR ETDAVWLATQ NHSALVTETT VVPFLPVNPE YSSTRNQ--- BACU008386/1-689 MDVYDEVDRR ETDAVWLATQ NHSTLVTETT VVPFLPVNPE YSSTRNQASG ENSBTAP00000008526/1-759 MDVYDEVDRR ETDAVWLATQ NHSTLVTETT VVPFLPVNPE YSSTRNQ--- 351 400 ENSTTRP00000004870/1-759 -GRQKLARFN AHEFATLVID ILSDAKRRQQ GSPLSSSKDN VELILKTISN bmy_08296T0/1-622 -GRQKLARFN AHEFATLVID ILSDAKRRQQ GSPLSSSKDN VELILKTINK ENSP00000347464/1-759 -GRQKLARFN AHEFATLVID ILSDAKRRQQ GSSLSGSKDN VELILKTINN BACU008386/1-689 RGRQKLARFN AHEFATLVID ILSDAKRRQQ GSPLSSSKDN VELILKTINN ENSBTAP00000008526/1-759 -GRQKLARFN AHEFATLVID ILSDAKRRQQ GSPLSSSKDN VELILKTISN 401 450 ENSTTRP00000004870/1-759 QHSGESQDND QPDYDSVASD EDTDLDATAS KAHRQKXXXX XXXXXXXXXX bmy_08296T0/1-622 QHSGESQDND QPDYDSVASD EDTDLEATAS QAHRQKSLDS DLSDGPVTVQ ENSP00000347464/1-759 QHSVESQDND QPDYDSVASD EDTDLETTAS KTNRQKSLDS DLSDGPVTVQ BACU008386/1-689 QHSGESQDND QPDYDSVASD EDTDLEATAS KAHRQKSLDS DLSDGPVTVQ ENSBTAP00000008526/1-759 QHSVESQDND QPDYDSVASD EDTDPEATAS KAHRQKSLDS DLSDGPVTVQ 451 500 ENSTTRP00000004870/1-759 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX---- ---------- bmy_08296T0/1-622 EFMEVKNALV ASEAKIQQLM KVNNNLSDEL RIMQKKIRVF KADTTTVAFL ENSP00000347464/1-759 EFMEVKNALV ASEAKIQQLM KVNNNLSDEL RIMQKK---- ---------- BACU008386/1-689 EFMEVKNALV ASEAKIQQLM KVNNNLSDEL RIMQKK---- ---------- ENSBTAP00000008526/1-759 EFLEVKNALV ASEAKIQQLM KVNNNLSDEL RIMQKK---- ---------- 501 550 ENSTTRP00000004870/1-759 ---------- ---------- ---------- ---------- ---------- bmy_08296T0/1-622 GGRAKGERGQ VFRPWLKDDR SPEGSARYVE RSDEDVDSSI EKHSPTAKHV ENSP00000347464/1-759 ---------- ---------- ---------- ---------- ---------- BACU008386/1-689 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008526/1-759 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000004870/1-759 --XXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08296T0/1-622 FQLQTLQSEN SNLRKQATTN IYQVQTDSEY TDTSNHSSLK RRPSARGSRP ENSP00000347464/1-759 --LQTLQSEN SNLRKQATTN VYQVQTGSEY TDTSNHSSLK RRPSARGSRP BACU008386/1-689 --LQTLQSEN SNLRKQATTN IYQVQTDSEY TDTSNHSSLK RRPSARGSRP ENSBTAP00000008526/1-759 --LQTLQSEN SNLRKQATTN IYQVQTGSEY TDTSNHSSLK RRPSARGSRP 601 650 ENSTTRP00000004870/1-759 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXIGRSA LVTSSSSLPS bmy_08296T0/1-622 MSMYETGSGQ KPYLPMGEVN HPEESRTRLQ PFPAHIGRSA LVTSSSSLPS ENSP00000347464/1-759 MSMYETGSGQ KPYLPMGEAS RPEESRMRLQ PFPAHIGRSA LVTSSSSLPS BACU008386/1-689 MSMYETGSGQ KPYLPMGEVN HPEESRTRLQ PFPAHASR-- ---------- ENSBTAP00000008526/1-759 MSMYETGSGQ KPYLPMGEVN HPEESRTRLQ PFPAHIGRSA FVTSSSSLPS 651 700 ENSTTRP00000004870/1-759 FPSTLSWSRD ESARRASRLE KQNSTPESDY DNTPNDRDLD DLG------- bmy_08296T0/1-622 FPSTLSWSRD ESTRRV---- ---------- -----KYTLN ALL------- ENSP00000347464/1-759 FPSTLSWSRD ESARRASRLE KQNSTPESDY DNTPNDMEPD GMG------- BACU008386/1-689 ---------- --------LE KQNSTPESDY DNTPNDRNPD DLGYMCRKNA ENSBTAP00000008526/1-759 FPSTLSWSRD ESTRRASRLE KQNSTPESDY DNTPNDRDLD DMG------- 701 750 ENSTTRP00000004870/1-759 ---------- ---SSRKGRQ RSTVWQGDGS GPDVAEPHKA PSPVFPSTED bmy_08296T0/1-622 ---------- ---------- -------SGG GAALLALCAS PSP------- ENSP00000347464/1-759 ---------- ---SSRKGRQ RSMVWPGDGL VPDTAEPHVA PSPTLPSTED BACU008386/1-689 LGLGSSTKDR AAWPSRKGRQ RSTVWQGDGS GPDAAEPHAA PSPVFPSTED ENSBTAP00000008526/1-759 ---------- ---SSRKGRQ RSSVWQSDSS GPDTAEPHVA PSPILPSTED 751 800 ENSTTRP00000004870/1-759 VIRKTEQITK NIQELLRAAQ ENKHDSYIPC SERIHVAVTE MAALFPKKPR bmy_08296T0/1-622 ---------- ---------- ---------- ---------- ---------- ENSP00000347464/1-759 VIRKTEQITK NIQELLRAAQ ENKHDSYIPC SERIHVAVTE MAALFPKKPK BACU008386/1-689 VIRKTEQITK NIQELLRAAQ ENKHDSYIPC SERIHVAVTE MAALFPKKPR ENSBTAP00000008526/1-759 VIRKTEQITK NIQELLRAAQ ENKHDSYIPC SERIHVAVTE MAALFPKKPK 801 850 ENSTTRP00000004870/1-759 SDMVRTSLRL LTSSAYRLQS ECKKTLPGDP GPPTDIQLVT QQVIQCAYDI bmy_08296T0/1-622 -----ASLR- ---------- ---------- ---------- ---------- ENSP00000347464/1-759 SDMVRTSLRL LTSSAYRLQS ECKKTLPGDP GSPTDVQLVT QQVIQCAYDI BACU008386/1-689 SDMVRTSLRL LTSSAYRLQS ECKKTLPGDP GPPTDIQLVT QQVIQCAYDI ENSBTAP00000008526/1-759 SDMVRTSLRL LTSSAYRLQS ECKKTLPGDP GPPTDIQLVT QQVIQCAYDI 851 900 ENSTTRP00000004870/1-759 AKAAKQLVTI TTKENNN bmy_08296T0/1-622 ---------- ------- ENSP00000347464/1-759 AKAAKQLVTI TTKENNN BACU008386/1-689 AKAAKQLVTI TTKENNN ENSBTAP00000008526/1-759 AKAAKQLVTI TTKENNN