KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:39 2014 Check: 00 .. Name: ENSP00000362127/1-753 Len: 754 Check: 3499 Weight: 1.00 Name: ENSBTAP00000008535/1-751 Len: 754 Check: 5350 Weight: 1.00 Name: ENSTTRP00000012843/1-738 Len: 754 Check: 483 Weight: 1.00 Name: bmy_02116T0/1-565 Len: 754 Check: 1896 Weight: 1.00 Name: BACU009691/1-693 Len: 754 Check: 2622 Weight: 1.00 // 1 50 ENSP00000362127/1-753 MGEHSPDNNI IYFEAEEDEL TPDDKMLRFV DKNGLVPSSS GTVYDRTTVL ENSBTAP00000008535/1-751 MGDHSPDDSI SYFEVEEDEL TPDDKMLRFV DKNGLVPSSS GTVYDRTTVL ENSTTRP00000012843/1-738 MGEHSPDDSI SYFEVEEDEL IPDDKMLRFV DKNGLVPSSS GTVYDRTTVL bmy_02116T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU009691/1-693 MGEHSPDDSI SYFEVEEDEL TPDDKMLRFV DKNGLVPSSS GTVYDRTTVL 51 100 ENSP00000362127/1-753 IEQDPGTLED EDDDGQCGEH LPFLVGGEEG FHLIDHEAMS QGYVQHIISP ENSBTAP00000008535/1-751 IEQDPGTLED EDDDGQCGEH LPFLVGGEEG FHLIDHEAMS QGYVQHIISP ENSTTRP00000012843/1-738 IEQDPGTLKD KDDDGQYGEH LPFLVGGEEG FHLIDHEAMS QGYVQHIISP bmy_02116T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU009691/1-693 IEQDPGTLED DDDDGQCGEH LPFLVGGEEG FHLIDHEAMS QGYVQHIISP 101 150 ENSP00000362127/1-753 DQIHLTINPG STPMPRNIEG ATLTLQSECP ETKRKEVKRY QCTFEGCPRT ENSBTAP00000008535/1-751 DQIHLTINPG STPMPRNIEG ATLTLQSECP ETKRKEVKRY QCTFEGCPRT ENSTTRP00000012843/1-738 DQIHLTINPG STPMPRNIEG ATLTLQSECP ETKRKEVKRY QCTFEGCPRT bmy_02116T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU009691/1-693 DQIHLTINPG STPMPRNIEG ATLTLQSECP ETKRKEVKRY QCTFEGCPRT 151 200 ENSP00000362127/1-753 YSTAGNLRTH QKTHRGEYTF VCNQEGCGKA FLTSYSLRIH VRVHTKEKPF ENSBTAP00000008535/1-751 YSTAGNLRTH QKTHRGEYTF VCNQEGCGKA FLTSYSLRIH VRVHTKEKPF ENSTTRP00000012843/1-738 YSTAGNLRTH QKTHRGEYTF VCNQEGCGKA FLTSYSLRIH VRVHTKEKPF bmy_02116T0/1-565 ---------- ---------- ---------- -----SLRIH VRVHTKEKPF BACU009691/1-693 YSTAGNLRTH QKTQRGEYTF VCNQEGCSKA FLTSYSLRIH VRVHTKEKPF 201 250 ENSP00000362127/1-753 ECDVQGCEKA FNTLYRLKAH QRLHTGKTFN CESEGCSKYF TTLSDLRKHI ENSBTAP00000008535/1-751 ECDVQGCEKA FNTLYRLKAH QRLHTGKTFN CESEGCSKYF TTLSDLRKHI ENSTTRP00000012843/1-738 ECDVQGCEKA FNTLYRLKAH QRLHTGKTFN CESEGCSKYF TTLSDLRKHI bmy_02116T0/1-565 ECDVQGCEKA FNTLYRLKAH QRLHTGKTFN CESEGCSKYF TTLSDLRKHI BACU009691/1-693 ECDVQGCEKA FNTLYRLKAH QRLHTGKTFN CESEGCSKYF TTLSDLRKHI 251 300 ENSP00000362127/1-753 RTHTGEKPFR CDHDGCGKAF AASHHLKTHV RTHTGERPFF CPSNGCEKTF ENSBTAP00000008535/1-751 RTHTGEKPFR CDHDGCGKAF AASHHLKTHV RTHTGERPFF CPSNGCEKTF ENSTTRP00000012843/1-738 RTHTGEKPFR CDHDGCGKAF AASHHLKTHV RTHTGERPFF CPSNGCEKTF bmy_02116T0/1-565 RTHTGEKPFR CDHDGCGKAF AASHHLKTHV RTHTGERPFF CPSNGCEKTF BACU009691/1-693 RTHTGEKPFR CDHDGCGKAF AASHHLKTHV RTHTGERPFF CPSNGCEKTF 301 350 ENSP00000362127/1-753 STQYSLKSHM KGHDNKGHSY NALPQHNGSE DTNHSLCLSD LSLLSTDSEL ENSBTAP00000008535/1-751 STQYSLKSHM KGHDNKGNSY SALLNHNGSE DTNHSLCLRN LSLLSTDSEF ENSTTRP00000012843/1-738 STQYSLKSHM KGHDNKGNSY SALLNHNGSE DTNHSLCLRN LSLLSTDSEF bmy_02116T0/1-565 STQYSLKSHM KGHDNKGNSY SALLNHNGSE DTNHSLCLRN LSLLSTDSEF BACU009691/1-693 STQYSLKSHM KGHDNKGNSY SALLNHSGSE DTNHSLCLRN LSLLSTDSEF 351 400 ENSP00000362127/1-753 RENSSTTQGQ D-LSTISPAI IFESMFQNSD DTAIQEDPQQ TASLTESFNG ENSBTAP00000008535/1-751 QENSNT--GQ N-LSTLSPAI IFGPMFQKSD DPAIQEDPQQ TAALIESFNG ENSTTRP00000012843/1-738 QENSNTTQGQ NTFSTLSPAI IFEPMFQKSD DPAIQEDPQQ TAFL------ bmy_02116T0/1-565 QENSNT--GQ NTFSTLSPAI IFEPMFQKSD DPAIQEDPQQ TAALIENFNG BACU009691/1-693 QENSNT--GQ NTFSTLSPAI IFEPMFQKSD DPAIQEDPQQ T--------- 401 450 ENSP00000362127/1-753 DAESVSDVPP STGNSASLSL PLVLQPGLSE PPQPLLPASA PSAPPPAPSL ENSBTAP00000008535/1-751 DAESVSDVPP STRHSASLSL PLILQPGISE PPQPLLPASA PSAPLPAPSL ENSTTRP00000012843/1-738 -NQCSKSADP AIGRSSR--- ----QPGI-E PPWSLLPASA PSTPLPAPSL bmy_02116T0/1-565 DAESVSDVLP STRHSASLSI PLVLHPGISE PPQPLLPASA PSAPLPAPSL BACU009691/1-693 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000362127/1-753 GPGSQQAAFG NPPALLQPPE VPVPHSTQFA ANHQEFLPHP QAPQPIVPGL ENSBTAP00000008535/1-751 GTGSQQAAFG NPPALLQPPE VPVAHSTQFA ANHQEFLPHL QAPQPIVPGL ENSTTRP00000012843/1-738 GTGSQQAAFG NPPALLQPPE VPVPHSTQFA ANHQEFLPHP QAPQPIVPGL bmy_02116T0/1-565 GTGSQQAAFG NPPALLQPPE VPVPHSTQFA ANHQEFLPHP QAPQPIVPGL BACU009691/1-693 GTGSQQAAFG NPPALLQPPE VPVPHSTQFA ANHQEFLPHP QAPQPIVPGL 501 550 ENSP00000362127/1-753 SVVAGASASA AAVASAVAAP APPQSTTEPL PAMVQTLPLG ANSVLTNNPT ENSBTAP00000008535/1-751 SVVAGALASA AAVASAMAAP PQPQSTTEPL PAMVQTLPLD ANSVLTSNPT ENSTTRP00000012843/1-738 SVVAGALASA AAVASAMAAP PQPQSTTEPL PAVVQTLPLD ANSVLTSNPT bmy_02116T0/1-565 SVVAGALASA AAVASAMAAP PQPQSTTEPL PAMVQTLPLD ANSVLTSNPT BACU009691/1-693 SVVAGALASA AAVASAMAAP PQPQSTTEPL PAMVQTLPLD ANSVLTSSPT 551 600 ENSP00000362127/1-753 ITITPTPNTA ILQSSLVMGE QNLQWILNGA TSSPQNQEQI QQASKVEKVF ENSBTAP00000008535/1-751 ITITPTPSAA ILQPSLVMGE QNLQWLLNGA TSTPQAQEQI QQASKVEKVF ENSTTRP00000012843/1-738 ITITPTPSTA LLQPSLVMGE QNLQWILNGA TSSPHTQEQI QQASKVEKVY bmy_02116T0/1-565 ITITPTPSTA LLQPSLVMGE QNLQWILNGA TSSPHTQEQI QQASKVEKVF BACU009691/1-693 ITITPTPSTA LLQPSLVMGE QNLQWILNGA TSSPHTQEQI QQASKVEKVF 601 650 ENSP00000362127/1-753 FTTAVPVASS PGSSVQQIGL SVPVIIIKQE EACQCQCACR DSAKERASSR ENSBTAP00000008535/1-751 FTTAVPVASS TGSAVQQIGL SVPVIIIKQE EACQCQCACR DSAKERAASR ENSTTRP00000012843/1-738 FTTAVPVASS TGSAVQQIGL SVPVIIIKQE EACQCQCACR DSAKERAAGR bmy_02116T0/1-565 FTTAVPVASS TGSAVQQIGL SVPVIIIKQE EACQCQCACR DSAKERAASR BACU009691/1-693 FTTAVPVASS TGSAVQQIGL SVPVIIIKQE EACQCQCACR DSAKERAASR 651 700 ENSP00000362127/1-753 RKGCSSPPPP EPSPQAPDGP SLQLPAQTFS SAPVPGSSSS TLPSSCEQSR ENSBTAP00000008535/1-751 RKGCPSPPPP TLSAQPPDGP SLKLPPQTFS PPPIPLSSSS TAASSCEQSR ENSTTRP00000012843/1-738 RKGCPSPPAP ALSTQPPDEP SLKLPPQTFS PPPIPL-SSS AASSSCEQSR bmy_02116T0/1-565 RKGCPSPPAP --SAQPPDEP SLKLPPQTFS PPPIPLSSSS AASSSCEQSR BACU009691/1-693 RKGCPSPPAP ALSAQPPDEP SLKLPPQTFS PPPIPLSSSS TASSSCEQSR 701 750 ENSP00000362127/1-753 QAETPSDPQT ETLSAMDVSE FLSLQSLDTP SNLIPIEALL QGEEEMGLTS ENSBTAP00000008535/1-751 QAVTPSDPQT EPLRAIDMSE FLSLQSLDTT SNLIPIEALL QEEEEMGLTS ENSTTRP00000012843/1-738 QAVTPSDPQT ETLRAMDMSE FLSLQNLDTP SNLIPIEALL QEEEEMGLTN bmy_02116T0/1-565 QAVTPSDPQT ETLRAMDMSE FLSLQNLDTP SNLIPIEALL QEEEEMGLTS BACU009691/1-693 QAVTPSDPQT ETLRAMDTSE FLSLQNLDTP SNLIPTEALV QEEEEMGLTS 751 800 ENSP00000362127/1-753 SFSK ENSBTAP00000008535/1-751 SFSK ENSTTRP00000012843/1-738 SFSK bmy_02116T0/1-565 SFSK BACU009691/1-693 SFSK