KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:40 2014 Check: 00 .. Name: ENSP00000367013/1-426 Len: 521 Check: 4960 Weight: 1.00 Name: ENSBTAP00000008557/1-418 Len: 521 Check: 2830 Weight: 1.00 Name: ENSTTRP00000005982/1-424 Len: 521 Check: 3036 Weight: 1.00 Name: bmy_09528T0/1-504 Len: 521 Check: 6721 Weight: 1.00 Name: BACU001114/1-228 Len: 521 Check: 7092 Weight: 1.00 // 1 50 ENSP00000367013/1-426 MEQRPR---- -GCAAVAAAL LLVLLGARAQ GGTRSPRCDC AGD------- ENSBTAP00000008557/1-418 MEPRPRPGTS AAAAAAVALL FLLLLGARA- -STPSPRCDC GHS------- ENSTTRP00000005982/1-424 MEPRPG---- -ACAAALAAA LLLLLGAQGQ GSAPSPRCDC VHS------- bmy_09528T0/1-504 ------MGTP LGQEPEKWAA LWARAGASEG WGDRVERVPC LGSQAGSQQP BACU001114/1-228 ---------- ---------- ---------M ATTHHP---- ---------- 51 100 ENSP00000367013/1-426 FHKKIGLFCC ---------- ---------- -RGC---PAG HYLKAPCTEP ENSBTAP00000008557/1-418 FPKRSGLGCC ---------- ---------- -KGC---PAG HYLKAPCTKP ENSTTRP00000005982/1-424 FQMRSGLVCC ---------- ---------- -GGC---PAG HYLKAPCTKP bmy_09528T0/1-504 LSRRPSSSSC WVPRAKAALP APGVTVCTAS RRGVVWSAAG AVQQAPCTKP BACU001114/1-228 ---------- ---------- ---------- -------PA- ---------- 101 150 ENSP00000367013/1-426 CGNSTCLVCP QDTFLAWENH HNSECARCQA CDEQASQVAL ENCSAVADTR ENSBTAP00000008557/1-418 CGAATCLPCP QGTFLARENH YETRCARCQA CDELAPQMAL RNCSAVADTH ENSTTRP00000005982/1-424 CGISTCLPCP RGTFLAWENH HKTRCARCQA CDEEASQVAL KNCSAVADTH bmy_09528T0/1-504 CGIPTCLPCP RGTFLAWENH HKTRCARCQA CDEEASQVAL KNCSAVADTH BACU001114/1-228 -----ALS-- ---------- ---------- ---------- ---------- 151 200 ENSP00000367013/1-426 CGCKPGWFVE CQVSQCVSSS PFYCQPCLDC GALHRHTRLL CSRRDTDCGT ENSBTAP00000008557/1-418 CGCRPGWFMD CMVSQCRHGS PFRCRPCTDC GALHRHTQTP CSSRDTHCGT ENSTTRP00000005982/1-424 CGCKPGWFMD CVVSQCPHSS PFRCHPCPDC EAVHRRTRAP CSSGDTHCGT bmy_09528T0/1-504 CGCKPGWFMD CVVSQCPHSS PFRCHPCPDC EALHRRTRAP CSSGDTHCGT BACU001114/1-228 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000367013/1-426 CLPGFYEHGD GCVSCPTPPP SLAGAPWGAV QSAVPLSVAG GRVGVFWVQV ENSBTAP00000008557/1-418 CLPGFYEYDK SCVSCPTST- -LGSCPEPCV AVCGWRQ--- ----MFWVQM ENSTTRP00000005982/1-424 CLPGFYEYGN SCVSCPTASP PLAGAPLGAV LGPVWLSVAG GRVGVFWVQV bmy_09528T0/1-504 CLPGFYEYGN SCVSCPTST- -LGGCPVPCV AVCGWRQ--- ----VFWVQV BACU001114/1-228 ---------- ---------- ---------- ---------- ----VFWVQV 251 300 ENSP00000367013/1-426 LLAGLVVPLL LGATLTYTYR HCWPHKPLVT ---------- ---------- ENSBTAP00000008557/1-418 LVAGLVVPLL LGATLTYTYH RCHPCKAIGP ---------- ---------- ENSTTRP00000005982/1-424 LLAALVVPLL LGATLTYTYR RCQLCKAIVP ---------- ---------- bmy_09528T0/1-504 LLAGLVVPLL LGATLTYTYR RCQLCKAMVP GKRTRAHVPR GLGSGWVAQS BACU001114/1-228 LLAGLVVPLL LGATLTYTYR RCQLCKAMVP ---------- ---------- 301 350 ENSP00000367013/1-426 ---------- ---------- ---------- ---------A DEAGMEALTP ENSBTAP00000008557/1-418 ---------- ---------- ---------- ---------A DDTGVEVWTP ENSTTRP00000005982/1-424 ---------- ---------- ---------- ---------A GEAGVEALTS bmy_09528T0/1-504 PFSLMQWGKL RQGVLGVGAE GRRFQSLAWL LIRLSLCLSA GEAGVEALTP BACU001114/1-228 ---------- ---------- ---------- ---------A GEAGVEALTP 351 400 ENSP00000367013/1-426 PPATHLSPLD SAHTLLAPPD SSEKICTVQL VGNSWTPGYP ETQEALCPQV ENSBTAP00000008557/1-418 LQTTHLSPPD SGPALLVTPS SSEKVCPVHL VGHSCTSGSP QTQEAPCLEA ENSTTRP00000005982/1-424 LQAAHLSPPD SSSTLLVTPS SGEKVCTVQL IGSSWTSGSP QAQEAPCPEV bmy_09528T0/1-504 LQATHLSPPD SSPTLLVTPS SSEKVCTVQL VGSSWTSGSP QAQEAPCPEV BACU001114/1-228 LQATHLSPPD SSPTLLVTPS SSEKVCTVQL VGSSWTSGSP QAQEAPCPEV 401 450 ENSP00000367013/1-426 TWSWDQLPSR ALGPAAAPTL SPESPAGSPA MMLQPGPQLY DVMDAVPARR ENSBTAP00000008557/1-418 TWSWDQLPSR APGLPPPP-- SPAPPAGSAA ATLQPGPQLY DVMDAVPARR ENSTTRP00000005982/1-424 TWSWDQLPSR ALGPPPPP-- SPARPAGSAA AMLQPGPQLY DVMDAVPARR bmy_09528T0/1-504 TWSWDQLPSR TLGPPPPP-- SPAPPAGSAA AILQPGPQLY DVMDAVPARR BACU001114/1-228 TWSWDQLPSR TLGPPPPP-- SPAPPAGSAA AMLQPGPQLY DVMDAVPARR 451 500 ENSP00000367013/1-426 WKEFVRTLGL REAEIEAVEV EIGRFRDQQY EMLKRWRQQQ PAGLGAVYAA ENSBTAP00000008557/1-418 WKEFMRTLGL REAEIEAVEV EVGRFRDQQY EMLKRWRQQQ HAGLGAVYAA ENSTTRP00000005982/1-424 WKEFVRTLGL REAEIEAVEV EVGRFRDQQY EMLKRWRQQQ PAGLGAVYAA bmy_09528T0/1-504 WKEFVRTLGL REAEIEAVEV EVRRFRDQQY EMLKRWRQQQ PAGLGAVYAA BACU001114/1-228 WKEFVRTLGL REAEIEAVEV EVRRFRDQQY EMLKRWRQQQ PAGLGAVYAA 501 550 ENSP00000367013/1-426 LERMGLDGCV EDLRSRLQRG P ENSBTAP00000008557/1-418 LERMGLDGCA EDLRSRLQRG P ENSTTRP00000005982/1-424 LERMGLDGCA EDLRSRLQRG P bmy_09528T0/1-504 LERMGLDGCA EDLRSRLQRG P BACU001114/1-228 LERMGLDGCA EDLRSRLQRG P