KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:35:41 2014 Check: 00 .. Name: ENSP00000361202/1-1257 Len: 1312 Check: 4440 Weight: 1.00 Name: ENSBTAP00000008574/1-1255 Len: 1312 Check: 9839 Weight: 1.00 Name: bmy_21102T0/1-1217 Len: 1312 Check: 1936 Weight: 1.00 Name: BACU017185/1-942 Len: 1312 Check: 989 Weight: 1.00 // 1 50 ENSP00000361202/1-1257 MASCSFTRDQ ATRRLRGAAA AAAAALAAVV TTPLLSSGTP TALIGTGSSC ENSBTAP00000008574/1-1255 MASCSFARDQ ATRRLRAAVA ATAAGLAAAA TTPFLSSGTP TALIGTGSSC bmy_21102T0/1-1217 ---------- ---------- ---------- ---------- ---------- BACU017185/1-942 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000361202/1-1257 PGAMWLSTAT GSRSDSESEE EDLPVGEEVC KRGYLRKQKH GHRRYFVLKL ENSBTAP00000008574/1-1255 PGAMWLSTAT GSRSDSESDE EDLPVGDEVC KRGYLRKQKH GHWRYFVLKL bmy_21102T0/1-1217 ---MWLSTAT GSRSDSESDE EDLPVGDEVC KRGYLRKQKH GHRRYFVLKL BACU017185/1-942 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000361202/1-1257 ETADAPARLE YYENARKFRH SVRAAAAAAA AAASGAAIPP LIPPRRVITL ENSBTAP00000008574/1-1255 ETADAPARLE YYENARKFRH SVRAAAAAAA AAASGATVPA LIAPRRVITL bmy_21102T0/1-1217 ETADAPARLE YYENARKFRH SVRAAAAAAA AAASGAAVPA LIPPRRVITL BACU017185/1-942 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000361202/1-1257 YQCFSVSQRA DARYRHLIAL FTQDEYFAMV AENESEQESW YLLLSRLILE ENSBTAP00000008574/1-1255 YQCFSVSQRA DARYPHLIAL FTQNEYFAMV AENESEQESW YLLLSRLILE bmy_21102T0/1-1217 YQCFSVSQRA DARYRHLIAL FTQDEYFAMV AENESEQESW YLLLSRLILE BACU017185/1-942 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000361202/1-1257 SKRRRCGTLG AQPDGEPAAL AAAAAAEPPF YKDVWQVIVK PRGLGHRKEL ENSBTAP00000008574/1-1255 SKRRRCGRLG AQPEGEPAAL AAAAAAEPPF YKDVWQVIVK PRGLGHRKEL bmy_21102T0/1-1217 SKRRRCGTPG AQPDGEPAAL AAAAAAEPPF YKDVWQVIVK PRGLGHRKEL BACU017185/1-942 ---------- ---------- ---------- YKDVWQVIVK PRGLGHRKEL 251 300 ENSP00000361202/1-1257 SGVFRLCLTD EEVVFVRLNT EVASVVVQLL SIRRCGHSEQ YFFLEVGRST ENSBTAP00000008574/1-1255 SGVFRLCLTD EEVLFVRLNT EVASVVVQLL SIRRCGHSEQ YFFLEVGRST bmy_21102T0/1-1217 SGVFRLCLTD EEVVFVRLNT EVASVVVQLL SIRRCGHSEQ YFFLEVGRST BACU017185/1-942 SGVFRLCLTD EEVVFVRLNT EVASVVVQLL SIRRCGHSEQ YFFLEVGRST 301 350 ENSP00000361202/1-1257 VIGPGELWMQ VDDCVVAQNM HELFLEKMRA LCADEYRARC RSYSISIGAH ENSBTAP00000008574/1-1255 VIGPGELWMQ VDDCVVAQNM HELFLEKMRA LCADEYRARC RSYSISIGGH bmy_21102T0/1-1217 VIGPGELWMQ VDDCVVAQNM HELFLEKMRA LCADEYRARC RSYSISIGAH BACU017185/1-942 VIGPGELWMQ VDDCVVAQNM HELFLEKMRA LCADEYRARC RSYSISIGAH 351 400 ENSP00000361202/1-1257 LLTLLSARRH LGLVPLEPGG WLRRSRFEQF CHLRAIGDGE DEMLFTRRFV ENSBTAP00000008574/1-1255 LLTLLSTRRH LDMLPLEPGG WFRRSRFEQF CHLRAIGDGE DEMLLAGRYI bmy_21102T0/1-1217 LLTLLSTRRH LDMLPLEPGG WLRRSRFEQF CHLRAIGDGE DEMLLARRYI BACU017185/1-942 LLTLLSTRRH LDMLPLEPGG WLRRVL---- ---------- ---------- 401 450 ENSP00000361202/1-1257 TPSEPVAHSR RGRLHLPRGR RSRRAVSVPA SFFRRLAPSP ARPRHPAEAP ENSBTAP00000008574/1-1255 TPSEPVPRSR RGRLHLPRGR RSRRATSVPA SFFRHAAPSP VRIRYPAEAL bmy_21102T0/1-1217 TPSEPVPASR RGRLHLPRAR RSRRAISVPA SFFRRVAPSP VRGPHPAEAP BACU017185/1-942 ----PPQGHR RGRLHLPRAR RSRRAISVPA SLFRRVAPSP VRGPHPAEAP 451 500 ENSP00000361202/1-1257 NNGARLSSEV SGSGSGNFGE EGNPQGKEDQ EGSGGDYMPM NNWGSGNGRG ENSBTAP00000008574/1-1255 HDRDPESSEA SSSGSGNSGE EGGPQRKEDQ EENEGDYMPM NNWGSGNGRG bmy_21102T0/1-1217 NEGACLSSEA PGSGSGNSGE EGNPQGKQDQ EGNGGDYMPM NNWGSGNGRG BACU017185/1-942 NEGACLSSEA PGSGSGNSGE EGNPQGKEDQ EGNGGDYMPM NNWGSGNSRG 501 550 ENSP00000361202/1-1257 SGGGQGSNGQ GSSSHSSGGN QCSGEGQGSR GGQGSNG--- --------QG ENSBTAP00000008574/1-1255 SGSGQGSSGQ GSSSQSSGGS QCSGRGHGSG GGQGSSSSHG SSGSGSGDQS bmy_21102T0/1-1217 SGGGQGSSGQ GSSSQSSGGS QCSGRGHGSG GGQGSSGSQG SSGQGSGGQG BACU017185/1-942 SGGGQGSSGQ GSSSQSSGGS QCSGRGHGSG GGQGSSGSQG SGAQGSRGQG 551 600 ENSP00000361202/1-1257 SGGNQCSRDG QGTAGGHGSG GGQRPGGGHG SGGGQGPGDG HGSGGGKNSG ENSBTAP00000008574/1-1255 AGGNQCSGDG QGTA-GHGSG SGQGAGGGHG SGRDQGAGDG HGSGGGKNSG bmy_21102T0/1-1217 AGGNQCSGDD QGTSGGHGSG SGQGAGGGHG SGRGQGPGDG HGSGRGKNSG BACU017185/1-942 AEGNQCSGDG QGTSGGHGSG SGQGAGGGHG SGRGQGPGDG HGSGRGKNSG 601 650 ENSP00000361202/1-1257 GGKGSGSGKG SDGDGERGKS LKKRSYFGKL TQSKQQQMPP PPPPPPPPPP ENSBTAP00000008574/1-1255 GGKGSGSGKG PEGNGDRGKS LKKRSYFGKL TQSKQQQM-- PPPPPPPPPP bmy_21102T0/1-1217 GGKGSGSGKG SEGNGDHGKS LKKRSYFGRL TQSKQQQMPP PPPPPPPPPP BACU017185/1-942 GGKGSGSGKG SEGNGDHGKS LKKRSYFGRL TQSKQQQMPP PPPPPPPPPP 651 700 ENSP00000361202/1-1257 AGGTGGKGKS GGRFRLYFCV DRGATKECKE AKEVKDAEIP EGAARGPHRA ENSBTAP00000008574/1-1255 GAATGGKGKS GGRFRLYFCA DRGATKERKE AKEGKDTEPP EGAARGPHRA bmy_21102T0/1-1217 AAATGGKGKS GGRFRLYFCA DRGATKERKE AKEVKDTETP EGAARGPHRA BACU017185/1-942 AAATGGKGKS GGRFRLYFCA DRGATKERKE AKEVKDTETP EGAARGPHRA 701 750 ENSP00000361202/1-1257 RAFDEDEDDP YVPMRPGVAT PLVSSSDYMP MAPQNVSASK KRHSRSPFED ENSBTAP00000008574/1-1255 RAFDEDEDDP YVPMRPGVAA PLASSSDYMP MAPQNVSVSK KRHSRSPFED bmy_21102T0/1-1217 RAFDEDEDDP YVPMRPGVAA PLSSSSDYMP MAPQNVSVSK KRHSRSPFED BACU017185/1-942 RAFDEDEDDP YVPMRPGGAA PLSSSSDYMP MAPQNVSVSK KRHSRSPFED 751 800 ENSP00000361202/1-1257 SRGYMMMFPR VSPPPAPSPP KAPDTNKEDD SKDNDSESDY MFMAPGAGAI ENSBTAP00000008574/1-1255 SRGYMMMFPR VSPPPVPSPP KEPDPAKEDD SKDNDSDSDY MFMAPGAGAI bmy_21102T0/1-1217 SRGYMMMFPR VSPPPAPSPP KAPDPDKEDD SKDNDSDSDY MFMAPGAGAI BACU017185/1-942 SRGYMMMFPR VSPPPAPSPP KAPDPDKEDD SKDNDSDSDY MFMAPGAGAI 801 850 ENSP00000361202/1-1257 PKNPRNPQGG SSSKSWSSYF SLPNPFRSSP LGQNDNSEYV PMLPGKFLGR ENSBTAP00000008574/1-1255 PKNPRNPQGG SSSKSWSSYF SLPNPFRSSP LGQSDHSEYV PMLPGKFLGK bmy_21102T0/1-1217 PKNPRNPQGG SSSKSWSSYF SLPNAFRSSP LGQSDHSEYV PMLPGKFLGK BACU017185/1-942 PKNPRNPQGG SSSKSWSSYF SLPHAFRSSP LGQSDHSEYV PMLPGKFLGK 851 900 ENSP00000361202/1-1257 GLDKEVSYNW DPKDAASKPS GEGSFSKPGD GGSPSKPSDH EPPKNKAKRP ENSBTAP00000008574/1-1255 GLEKEVSSNR GPKDTASKPS VKGSFSKPRD GGSPSKRSGD GPPKNKAKRP bmy_21102T0/1-1217 GLDKEASSNR GPKDVTSKPS VEGSFSKPRD EGSPSKRSGD GPPKNKTKRP BACU017185/1-942 GLDKEASSNR GPKDVTSKPS VEGSFSKPRD EGSPSKRSGD GPPKNKTKRP 901 950 ENSP00000361202/1-1257 NRLSFITKGY KIKPKPQKPT HEQREADSSS DYVNMDFTKR ESNTPAPSTQ ENSBTAP00000008574/1-1255 NRLPFMTKGN KVKPKPQKPT QEQREADSPR GYVNIDFPKR GYNMPDPCLQ bmy_21102T0/1-1217 NRLSFITKGN KIKPKPQKPT HERKEADSAR GYINIDFPKR GSNMPAPCIQ BACU017185/1-942 NRLSFITKGN KIKPKPQKPT HEWKEADSAR GYINIDFPKR GSNMPAPCIQ 951 1000 ENSP00000361202/1-1257 GLPDSWGIIA EPRQSAFSNY VNVEFGVPFP NPANDLSDLL RAIPRANPLS ENSBTAP00000008574/1-1255 RLPGVWGIIA DPRQFAFSNY VNVEFGVPFP NPADNLSDFF RAIPGANPFF bmy_21102T0/1-1217 RLPGLWGIIA DPRQFAFSNY VNVEFGVPFP NPANDLSDLL RAIPGANPFS BACU017185/1-942 RLPGLWGIIA DPRQFAFSNY VNVEFGVPFP NPANDLSDLL RAIPGANPFS 1001 1050 ENSP00000361202/1-1257 LDSARWPLPP LPLSATGSNA IEEEGDYIEV IFNSAMTPAM ALADSAIRYD ENSBTAP00000008574/1-1255 LDG------- ----ATGSSA NREEGDYIEV IFNPAMTPAV PFADSAIRYD bmy_21102T0/1-1217 LDGARWPLPP LPPSATGNSA NEEEGDYIEV IFNPAMTPAV PFSDSAIRYD BACU017185/1-942 LDCARWPLPP LPPSATGSSA NEEEGDYIEV IFNPAMTPAV PFSDSAIRYD 1051 1100 ENSP00000361202/1-1257 AETGRIYVVD PFSECCMDIS LSPSRCSEPP PVARLLQEEE QERRRPQSRS ENSBTAP00000008574/1-1255 AETGRIYVVD PFSECCMNIS LSPSRCSERP PVARLLLLEE LERRRPQSRS bmy_21102T0/1-1217 AETGRIYVVD PFSECCMDIS LSPSRCSEPP PVARLLLEEE LESRRPQSRS BACU017185/1-942 AETGRIYVVD PFSECCMDIS LSPSRCSEPP LVGRLLLEEE LESRRPQSH- 1101 1150 ENSP00000361202/1-1257 QSFFAAARAA VSAFPTDSLE RDLSPSSAPA VASAAEPTLA LSQVVAAASA ENSBTAP00000008574/1-1255 QSFFAAARAA ISAFPTDSLE RDLSASFAAA AAAV--PTLA LGRALAAASA bmy_21102T0/1-1217 QSFFAAARAA VSAFPTDSLE RDLSASLAAA AAAA--PTLA VSRALAAASA BACU017185/1-942 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000361202/1-1257 LAAAPGIGAA A----AAAGF DSASARWFQP VANAADAEAV RGAQDVAGGS ENSBTAP00000008574/1-1255 LVAAPGIGAA AAGLEAAAGF DSASVRWFLP VADAAGA-AV RGAQDIAGGS bmy_21102T0/1-1217 LVAAPGIGAA AADLEAAAGS DSASVRWFQP AANAAGAEAV RGAQDVAGGS BACU017185/1-942 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000361202/1-1257 NPGAHNPSAN LARGDNQAGG AAAAAAAPEP PPRSRRVPRP PEREDSDNDD ENSBTAP00000008574/1-1255 NPRPPNPSAD LAGGENRAGG AAAAVAAAPR SPGRGRVSRP PEREDSD-DD bmy_21102T0/1-1217 NPRAQNPSAD LAGGNNRAGG AAAAAAAPPP SPGRGRAPRP PEQEDSD-DD BACU017185/1-942 ---------- LAGGNNRAGG AAAAAAAPPP SPGRGRAPRP PEQEDSD-DD 1251 1300 ENSP00000361202/1-1257 DTHVRMDFAR RDNQ-FDSPK RGR------- ---------- ---------- ENSBTAP00000008574/1-1255 DTYVRMDFAR RDNGKFDSPQ RGW------- ---------- ---------- bmy_21102T0/1-1217 DTYVRMDFAR PDNEKFDSPQ RGW------- ---------- ---------- BACU017185/1-942 DTYVRMDFAR PDNEKFDSPQ RGWHINTVLA RKPATSYEGL LVVAAALTIV 1301 1350 ENSP00000361202/1-1257 ---------- -- ENSBTAP00000008574/1-1255 ---------- -- bmy_21102T0/1-1217 ---------- -- BACU017185/1-942 SPASLPPAVS AA