KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:42 2014 Check: 00 .. Name: ENSBTAP00000008588/1-215 Len: 355 Check: 3425 Weight: 1.00 Name: ENSP00000352849/1-342 Len: 355 Check: 9332 Weight: 1.00 Name: ENSTTRP00000012267/1-340 Len: 355 Check: 3822 Weight: 1.00 Name: bmy_08904T0/1-301 Len: 355 Check: 5219 Weight: 1.00 Name: BACU015620/1-271 Len: 355 Check: 3203 Weight: 1.00 // 1 50 ENSBTAP00000008588/1-215 MVVSLGDHRR CPVPSLMPTL -TCLAPSSPC SWLLALLLVL SGVPEQSKGS ENSP00000352849/1-342 ---------M CST---MSAP -TCLAHLPPC FLLLALVLVP SDASGQSSRN ENSTTRP00000012267/1-340 ---------L CPV---MPTP -TRLAHSSPR SWLLALLLVL WGASEQSKAG bmy_08904T0/1-301 ---------M VFASTPFPSF GTALMSHRQI VWSSEAL--- -RASEQSKGG BACU015620/1-271 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000008588/1-215 KWQVLQPEGP MLVAEG---- ---------- ---------- ---------- ENSP00000352849/1-342 DWQVLQPEGP MLVAEGETLL LRCMVVGSCT DGMIKWVKVS TQDQQEIYNF ENSTTRP00000012267/1-340 KWQVLQPEGP MLVAEGETLL LRCTVVGSCT DGMIKWVKVS NQDQQEIYNF bmy_08904T0/1-301 KWQVLQPEGP MLVAEGETLL LRCTVVGSCT DDMIKWVKVS NQDQQEIYNF BACU015620/1-271 ---------- MLVAEGETLL LRCTVVGSCT DDMIKWVKVS NQDQQEIYNF 101 150 ENSBTAP00000008588/1-215 ---------- ---------- ---------- ---------- ---------- ENSP00000352849/1-342 KRGSFPGVMP MIQRTSEPLN CDYSIYIHNV TREHTGTYHC VRFDGLSEHS ENSTTRP00000012267/1-340 KHGFFPEVMP MIQKTLEPLN CDYSIYIHNV TAKHAGSYHC VRLDGLNEHS bmy_08904T0/1-301 KHGFFPGVMP MIQKTLEPLN CDYSIYIHNV TTKHAGTYRC VRLDGL---- BACU015620/1-271 KHGFFPGVMP MIQKTLEPLN CDYSIYIHNV TTKHAGTYRC VRLDGLSEHS 151 200 ENSBTAP00000008588/1-215 ---------- ----PGNTGP DLWIIQPQEL VLATPGDTVF LNCTVLGVGP ENSP00000352849/1-342 EMKSDEGTSV LVKGAGDPEP DLWIIQPQEL VLGTTGDTVF LNCTVLGDGP ENSTTRP00000012267/1-340 GKKLDEGTSV LVKRAGDPEP DLWIIQPQEL VLATTGDTVF LNCTVLGDGP bmy_08904T0/1-301 ---------- ---RAGDPEP DLWIIQPQEL VLATTGDTVF LNCTVLGDGP BACU015620/1-271 ENKLDEGTSV LVKRAGDPEP DLWIIQPQEL VLATTGDTVF LNCTVLGDGP 201 250 ENSBTAP00000008588/1-215 PGPIRWFRGT GLNREAIYNF RGISYSNVTA VQASNNDFSI LLHGISTEHA ENSP00000352849/1-342 PGPIRWFQGA GLSREAIYNF GGISHPKETA VQASNNDFSI LLQNVSSEDA ENSTTRP00000012267/1-340 PGPIRWFRGA GLSREAIYNF RGISYPNVTA VRASNNDFSI LLHGISTEHS bmy_08904T0/1-301 PGPIRWFRGA GLSREAIYNF RGISYPNVTA VQASNNDFSI LLHGISTEYA BACU015620/1-271 PGPIRWFRGA GLNREAIYNF RGISYPNVTA VQASNNDFSI LLHGISTEYA 251 300 ENSBTAP00000008588/1-215 GTYYCVKFQT KLNRQYLSGQ GTRLRVKGET EPVLSKGQNS PRNIQ--PRY ENSP00000352849/1-342 GTYYCVKFQR KPNRQYLSGQ GTSLKVKAKS TSSKEAEFTS EPATEMSPTG ENSTTRP00000012267/1-340 GTYYCVKFQR KPNRQYLSGQ GTRLRVKAKH TSLQESEFTN ERAAKVFPSG bmy_08904T0/1-301 GTYYCVKFQR KPNRQYLSGQ GTRLRVKAKH TSLQESEFTN ERAAKVFPSG BACU015620/1-271 GTYYCVKFQR KPNRQYLSGQ GTRLRVKANH TSLQESEFTN ERAAKVFPSG 301 350 ENSBTAP00000008588/1-215 FHQVSIFTSS GITS------ ---------P P--------- ---------- ENSP00000352849/1-342 LLVVFAPVVL GLKAITLAAL LLALATSRRS PGQEDVKTTG PAGAMNTLAW ENSTTRP00000012267/1-340 LLSVLTLVVL GLKAVTLAAV LLALAAHRRN P-QEDVKNSG PAAVL-ILAW bmy_08904T0/1-301 LLSVLTLAVL GLKAVTLAAL LLALAAHRRN P--------- ---------- BACU015620/1-271 LLSVLTLAVL GLKAVTLAAL LLALAAHRRN P--------- ---------- 351 400 ENSBTAP00000008588/1-215 ----- ENSP00000352849/1-342 SKGQE ENSTTRP00000012267/1-340 GMGYG bmy_08904T0/1-301 ----- BACU015620/1-271 -----