KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:43 2014 Check: 00 .. Name: ENSTTRP00000007489/1-1050 Len: 1177 Check: 1046 Weight: 1.00 Name: ENSP00000349595/1-1001 Len: 1177 Check: 1182 Weight: 1.00 Name: ENSBTAP00000008593/1-993 Len: 1177 Check: 8784 Weight: 1.00 Name: bmy_00797T0/1-785 Len: 1177 Check: 8773 Weight: 1.00 Name: BACU011897/1-994 Len: 1177 Check: 342 Weight: 1.00 // 1 50 ENSTTRP00000007489/1-1050 GVAGCSSGTG LRASWREELG GGRREKGRNP DKQAGGHTEE GPRVRTPKEH ENSP00000349595/1-1001 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008593/1-993 ---------- ---------- ---------- ---------- ---------- bmy_00797T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU011897/1-994 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000007489/1-1050 TAPGPQEGST MEAAHSKTTE ECLAYFGVSE TTGLTPDQVK RHLEKYGHNE ENSP00000349595/1-1001 ---------- MEAAHAKTTE ECLAYFGVSE TTGLTPDQVK RNLEKYGLNE ENSBTAP00000008593/1-993 ---------- MEAAHSKTTE ECLAYFGVSE TTGLTPDQVK RHLEKYGHNE bmy_00797T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU011897/1-994 ---------- MEAAHSKTTE ECLAYFGVSE TTGLTPDQVK RHLEKYGHN- 101 150 ENSTTRP00000007489/1-1050 LPAEEGKSLW ELVVEQFEDL LVRILLLAAC ISFVLAWFEE GEETITAFVE ENSP00000349595/1-1001 LPAEEGKTLW ELVIEQFEDL LVRILLLAAC ISFVLAWFEE GEETITAFVE ENSBTAP00000008593/1-993 LPAEEGKSLW ELVLEQFEDL LVRILLLAAC ISFVLAWFEE GEETVTAFVE bmy_00797T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU011897/1-994 -----GKSLW ELVLEQFEDL LVRILLLAAC ISFVLAWFEE GEETITAFVE 151 200 ENSTTRP00000007489/1-1050 PFVILLILIA NAIVGVWQER NAENAIEALK EYEPEMGKVY RADRKSVQRI ENSP00000349595/1-1001 PFVILLILIA NAIVGVWQER NAENAIEALK EYEPEMGKVY RADRKSVQRI ENSBTAP00000008593/1-993 PFVILLILIA NAIVGVWQER NAENAIEALK EYEPEMGKVY RADRKSVQRI bmy_00797T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU011897/1-994 PFVILLILIA NAIVGVWQER NAENAIEALK EYEPEMGKVY RADRKSVQRI 201 250 ENSTTRP00000007489/1-1050 KARDIVPGDI VEVAVGDKVP ADIRILTIKS TTLRVDQSIL TXXXXXXXXX ENSP00000349595/1-1001 KARDIVPGDI VEVAVGDKVP ADIRILAIKS TTLRVDQSIL TGESVSVIKH ENSBTAP00000008593/1-993 KARDIVPGDI VEVAVGDKVP ADIRILTIKS TTLRVDQSIL TGESVSVIKH bmy_00797T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU011897/1-994 KARDIVPGDI VEVVVGDKVP ADIRILTIKS TTLRVDQSIL TGESVSVVKH 251 300 ENSTTRP00000007489/1-1050 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX KIGKIRDQMA ENSP00000349595/1-1001 TEPVPDPRAV NQDKKNMLFS GTNIAAGKAL GIVATTGVGT EIGKIRDQMA ENSBTAP00000008593/1-993 TEPVPDPRAV NQDKKNMLFS GTNIAAGKAI GIVATTGVGT EIGKIRDQMA bmy_00797T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU011897/1-994 TDPVPDLRAV NQDKKNMLFS GTNIAAGKAI GIVASTGVNT EIGKIRDQMA 301 350 ENSTTRP00000007489/1-1050 ATEQDKTPLQ QKLDEFGEQL SKVISLICVA VWLINIGHFN DPIHGGSWIR ENSP00000349595/1-1001 ATEQDKTPLQ QKLDEFGEQL SKVISLICVA VWLINIGHFN DPVHGGSWFR ENSBTAP00000008593/1-993 ATEQDKTPLQ QKLDEFGEQL SKVISLICVA VWLINIGHFN DPVHGGSWIR bmy_00797T0/1-785 ---------- ---------- ---------- ---------- ---------- BACU011897/1-994 ATEQDRTPLQ QKLDEFGKQL SKVISLICVA VWLINIGHFN DPIHGGSWIR 351 400 ENSTTRP00000007489/1-1050 GAIYYFKIAV ALAVAAIPEG LPAVITTCLA LGTRRMAKKN AIVRSLPSVE ENSP00000349595/1-1001 GAIYYFKIAV ALAVAAIPEG LPAVITTCLA LGTRRMAKKN AIVRSLPSVE ENSBTAP00000008593/1-993 GAIYYFKIAV ALAVAAIPEG LPAVITTCLA LGTRRMAKKN AIVRSLPSVE bmy_00797T0/1-785 ---------- ---------- ---------- -----MAKKN AIVRSLPSVE BACU011897/1-994 GAVYYFKIAV ALAVAAIPEG LPAVITTCLA LGTRRMAKKN AIVRSLPSVE 401 450 ENSTTRP00000007489/1-1050 TLGCTSVICS DKTGTLTTNQ MSVCKMFIIE KVEGDICLLN KFSITGSTYA ENSP00000349595/1-1001 TLGCTSVICS DKTGTLTTNQ MSVCKMFIID KVDGDICLLN EFSITGSTYA ENSBTAP00000008593/1-993 TLGCTSVICS DKTGTLTTNQ MSVCKESVYD FIGGQYCXLN EFSVTGSTYA bmy_00797T0/1-785 TLGCTSVICS DKTGTLTTNQ MSVCKMFIID KVDGDICLLN KFSITGSTYA BACU011897/1-994 TLGCTSVICS DKTGTLTTNQ MSVCKMFIID KVEGDICLLN KFSITGSTYA 451 500 ENSTTRP00000007489/1-1050 PEGEVLKNDK PVRTGQYDGL VELATICALC NDSSLDFNEA KGAYEKVGEA ENSP00000349595/1-1001 PEGEVLKNDK PVRPGQYDGL VELATICALC NDSSLDFNEA KGVYEKVGEA ENSBTAP00000008593/1-993 PEGEVLKNDK PVRSGQYDGL VELATICALC NDSSLDFNET KGIYEKVGEA bmy_00797T0/1-785 PEGEVLKNDK PVRTGEYDGL VELATICALC NDSSLDFNEA KGVYEKVGEA BACU011897/1-994 PEGEVLKNDK PVRTGEYDGL VELATICALC NDSSLDFNEA KGVYEKVGEA 501 550 ENSTTRP00000007489/1-1050 TETALTTLVE KMNVFNTELR NLSKVERANA CNLVIRQLMK KEFTLEFSRD ENSP00000349595/1-1001 TETALTTLVE KMNVFNTDVR SLSKVERANA CNSVIRQLMK KEFTLEFSRD ENSBTAP00000008593/1-993 TETALTTLVE KMNVFNTEVR NLSKVERANA CNSVIRQLMK KEFTLEFSRD bmy_00797T0/1-785 TETALTTLVE KMNVFNTELR NLSKVERANA CNLVIRQLMK KEFTLEFSRD BACU011897/1-994 TETALTTLVE KMNVFNTELR NLSKVERANA CNLVIRQLMK KEFTLEFSRD 551 600 ENSTTRP00000007489/1-1050 RKSMSVYCSP AK-SRAAVGN KMFVKGAPEG VIDRCNYVRV GTTRVPMTGP ENSP00000349595/1-1001 RKSMSVYCSP AKSSRAAVGN KMFVKGAPEG VIDRCNYVRV GTTRVPLTGP ENSBTAP00000008593/1-993 RKSMSVYCSP AK-SRAAVGN KMFVKGAPEG VIDRCNYVRV GTTRVPMTGP bmy_00797T0/1-785 RKSMSVYCSP MK-SRAAVGN KMFVKGAPEG IIERCNYLRV GTTRVPMTGP BACU011897/1-994 RKSMSVYCSP MK-SRAAVGN KMFVKGAPEG IVERCNYLRV GTTRVPMTGP 601 650 ENSTTRP00000007489/1-1050 VKETILSVIK EWGTGRDTLR CLALATRDTP PKREEMVLDD SSRFMEYETD ENSP00000349595/1-1001 VKEKIMAVIK EWGTGRDTLR CLALATRDTP PKREEMVLDD SARFLEYETD ENSBTAP00000008593/1-993 VKEKILSVIK EWGTGRDTLR CLALATRDTP PKREEMVLDD STKFMEYETD bmy_00797T0/1-785 VKETILSVIK EWSGGRDTLR CLALATRDTP PKREEMVLDD ASRFMEYETD BACU011897/1-994 VKETILSVIK EWSGGRDTLR CLALATRDTP PKREEMVLDD SSRFMEYETD 651 700 ENSTTRP00000007489/1-1050 LTFVGVVGML DPPRKEVTDS ILLCRDAGIR VIMITGDNKG TAIAICRRIG ENSP00000349595/1-1001 LTFVGVVGML DPPRKEVTGS IQLCRDAGIR VIMITGDNKG TAIAICRRIG ENSBTAP00000008593/1-993 LTFVGVVGML DPPRKEVMGS IQLCRDAGIR VIMITGDNKG TAIAICRRIG bmy_00797T0/1-785 LTFVGVVGML DPPRKEVTGS ILLCRDAGIR VIMITGDNKG TAIAICRRIG BACU011897/1-994 LTFVGVVGML DPPRKEVTGS ILLCRDAGIR VIMITGDNKG TAIAICRRIG 701 750 ENSTTRP00000007489/1-1050 IFGENEDVAD RAYTGREFDD LPLTTQREAC KRACCFARVE PSHKSKIVEY ENSP00000349595/1-1001 IFGENEEVAD RAYTGREFDD LPLAEQREAC RRACCFARVE PSHKSKIVEY ENSBTAP00000008593/1-993 IFGENEDVAD RAYTGREFDD LPLAEQREAC RRACCFARVE PTHKSKIVEY bmy_00797T0/1-785 IFEENEDVAD RAYTGREFDD LPPAVQREAC RRACCFARVE PSHKSKIVEC BACU011897/1-994 IFEENEDVAD RAYTGREFDD LPLAVQREAC RRACCFARVE PSHKSKIVEC 751 800 ENSTTRP00000007489/1-1050 LQSYDEITAM TGDGVNDAPA LKKAEIGIAM GSGTAVAKSA SEMVLADDNF ENSP00000349595/1-1001 LQSYDEITAM TGDGVNDAPA LKKAEIGIAM GSGTAVAKTA SEMVLADDNF ENSBTAP00000008593/1-993 LQSFDEITAM TGDGVNDAPA LKKAEIGIAM GSGTAVAKTA SEMVLADDNF bmy_00797T0/1-785 LQSFDEITAM TGDGVNDAPA LKKAEIGIAM GSGTAVAKTA SEMVLADDNF BACU011897/1-994 LQSFDEITAM TGDGVNDAPA LKKAEIGIAM GSGTAVAKTA SEMVLADDNF 801 850 ENSTTRP00000007489/1-1050 STIVAAVEEG RAIYNNMKQF IRYLISSNVG EVVCIFLTAA LGLPEALIPV ENSP00000349595/1-1001 STIVAAVEEG RAIYNNMKQF IRYLISSNVG EVVCIFLTAA LGLPEALIPV ENSBTAP00000008593/1-993 STIVAAVEEG RAIYNNMKQF IRYLISSNVG EVVCIFLTAA LGLPEALIPV bmy_00797T0/1-785 STIVAAVEEG RAIYNNMKQF IRYLISSNVG EVVCIFLTAA LGLPEALIPV BACU011897/1-994 STIVAAVEEG RAIYNNMKQF IRYLISSNVG EVVCIFLTAA LGLPEALIPV 851 900 ENSTTRP00000007489/1-1050 QLLWVNLVTD GLPATALGFN PPDLDIMDRP PRSPKEPLIS GWLFFRYMAI ENSP00000349595/1-1001 QLLWVNLVTD GLPATALGFN PPDLDIMDRP PRSPKEPLIS GWLFFRYMAI ENSBTAP00000008593/1-993 QLLWVNLVTD GLPATALGFN PPDLDIMDRP PRTPKEPLIS GWLFFRYMAI bmy_00797T0/1-785 QLLWVNLVTD GLPATALGFN PPDLDIMDRP PRSPKEPLIS GWLFFRYMAI BACU011897/1-994 QLLWVNLVTD GLPATALGFN PPDLDIMDRP PRNPKEPLIS GWLFFRYMAI 901 950 ENSTTRP00000007489/1-1050 GG-------- ---------- ---------- ---------- ---------- ENSP00000349595/1-1001 GG-------- ---------- ---------- ---------- ---------- ENSBTAP00000008593/1-993 GG-------- ---------- ---------- ---------- ---------- bmy_00797T0/1-785 GGEQDETPHF FPTLRADPLS GTPASPQQPL RWALFLQQLF MARRPSQLLP BACU011897/1-994 GA-------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000007489/1-1050 ---------- ------YVGA ATVGAAAWWF LYAEDGPHIT YSQLTHYMKC ENSP00000349595/1-1001 ---------- ------YVGA ATVGAAAWWF LYAEDGPHVN YSQLTHFMQC ENSBTAP00000008593/1-993 ---------- ------YVGA ATVGAAAWWF LYAEDGPHVT YSQLTHFMKC bmy_00797T0/1-785 SPQPWAPNSH LLSTTAYVGA ATVGAAVWWF LYAEDGPHIT YSQLTHFLKC BACU011897/1-994 ---------- ------YVGA ATVGAAVWWF LYAEDGPHIT YSQLTHYLKC 1001 1050 ENSTTRP00000007489/1-1050 AEHNPYFEGV DCEVFEAPEP MTMALSVLVT IEMCNALNXX XXXXXXXXXX ENSP00000349595/1-1001 TEDNTHFEGI DCEVFEAPEP MTMALSVLVT IEMCNALNSL SENQSLLRMP ENSBTAP00000008593/1-993 SEHSPDFEGV DCEVFEAPQP MTMALSVLVT IEMCNALNSL SENQSLVRMP bmy_00797T0/1-785 TEHNPDFEGV DCEVFEAPEP MTMALSVLVT IEMCNALNSL SENQSLLRMP BACU011897/1-994 TEHNADFEGV DCEVFEAPEP MTMALSVLVT IEMCNALNSL SENQSLLRMP 1051 1100 ENSTTRP00000007489/1-1050 XXXXXXLV-S ICLSMSLH-L ILYVD-LPM- ---------- -----IFKLQ ENSP00000349595/1-1001 PWVNIWLLGS ICLSMSLHFL ILYVDPLPM- ---------- -----IFKLR ENSBTAP00000008593/1-993 PWVNIWLVGS IGLSMSLHFL ILYVDPLPM- ---------- -----IFKLQ bmy_00797T0/1-785 PWANIWLLGS ICLSMSLHFL ILYVDPLPIQ KMKEGSNQSF CPPFPTLIVT BACU011897/1-994 PWANIWLLGS ICLSMSLHFL ILYVDPLPV- ---------- -----IFKLQ 1101 1150 ENSTTRP00000007489/1-1050 ALDLPHW--- --------LM VFKISLPV-- ---------- ---------- ENSP00000349595/1-1001 ALDLTQW--- --------LM VLKISLPV-- ---------- ---------- ENSBTAP00000008593/1-993 ALDLYHW--- --------LM VLKISLPV-- ---------- ---------- bmy_00797T0/1-785 RLQPELWHRP PPRAPQPDIL VYKRNVPFTS PPPSATAPPP FALVKPPLPD BACU011897/1-994 ALDVAHW--- --------LM VFKISLPV-- ---------- ---------- 1151 1200 ENSTTRP00000007489/1-1050 -IGLDELLKF IARN--YLEG ------- ENSP00000349595/1-1001 -IGLDEILKF VARN--YLED PEDERRK ENSBTAP00000008593/1-993 -IGLDEILKF VARN--YLEG ------- bmy_00797T0/1-785 PVGLAGTRRP IELSCLFIEN K------ BACU011897/1-994 -IGLDELLKF IARN--YLED PVDERRK