KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:43 2014 Check: 00 .. Name: ENSP00000350934/1-569 Len: 640 Check: 6765 Weight: 1.00 Name: ENSBTAP00000008595/1-585 Len: 640 Check: 2586 Weight: 1.00 Name: ENSTTRP00000007490/1-533 Len: 640 Check: 6566 Weight: 1.00 Name: bmy_00799T0/1-550 Len: 640 Check: 3469 Weight: 1.00 Name: BACU011896/1-616 Len: 640 Check: 8785 Weight: 1.00 // 1 50 ENSP00000350934/1-569 MAAAAPVAAD DDERRRRPGA ALEDSRSQEG ANGEAESGEL SRLRAELAGA ENSBTAP00000008595/1-585 MAAAAPAAAG EDGRRRLPGA AL-DIQPQEG AKVEAESGEL ERLRAELAGA ENSTTRP00000007490/1-533 MAAPAPAAAG EDARRRQPEA AL-DPQTPEG TKVEAESGEL DRLRAELAGA bmy_00799T0/1-550 MAAPARPAAG EDGRRRQPEA AL-DPQPPEG AKVEAESAEL DRLRAELAGA BACU011896/1-616 MAAPARPAAG EDGRRRQPEA AL-DPQPPEG AKVEAESAEL DRLRAELAGA 51 100 ENSP00000350934/1-569 LAEMETMKAV AEVSESTKAE AVAAVQRQCQ EEVASLQAIL KDSISSYEAQ ENSBTAP00000008595/1-585 LAEMETMKAV AEVSESTKAE AVAAVQRQCQ EEVASLQAIL KDSISSYEAQ ENSTTRP00000007490/1-533 LAEMETMKAV AEVSESTKAE AVAAVQRQCQ EEVASLQAIL KDSISSYEAQ bmy_00799T0/1-550 LAEMETMKAV AEVSESTKAE AVAAVQRQCQ EEVASLQAIL KDSISSYEAQ BACU011896/1-616 LAEMETMKAV AEVSESTKAE AVAAVQRQCQ EEVASLQAIL KDSISSYEAQ 101 150 ENSP00000350934/1-569 ITALKQERQQ QQQDCEEKER ELGRLKQLLS RAYPLDSLEK QME------- ENSBTAP00000008595/1-585 ITSLKQERQQ QQQDCEEKER ELGRLKQLLS RAHPLDSLEK QME------- ENSTTRP00000007490/1-533 ITSLKQERQQ QQQDCEEKER ELGRLKQLLS RAHPLDSLEK QME------- bmy_00799T0/1-550 IASLKQERQQ QQQDREEKER ELGRLKQLLS RAHPLDSLEK QMEKVGVGTA BACU011896/1-616 IASLKQERQQ QQQDREEKER ELGRLKQLLS RAHPLDSLEK QME------- 151 200 ENSP00000350934/1-569 ---------- -----KAHED SEKLREIVLP MEKEIEELKA KLLRAEELIQ ENSBTAP00000008595/1-585 ---------- -----KAHED SEKLREIVLP MEQEIEELKA KLLRAEELIQ ENSTTRP00000007490/1-533 ---------- ---------- ---------- ---------- ---------K bmy_00799T0/1-550 YPPPPQGFGN MLKQPKAHED SEKLREIVLP MEQEIEELKA KLLRAEELIQ BACU011896/1-616 ---------- -----KAHED SEKLREIVLP MEQEIEELKA KLLRAEELIQ 201 250 ENSP00000350934/1-569 EIQRRPRHAP SLHGSTELLP LSRDPSPPLE PLEELSGDGG PAAEAFAHNC ENSBTAP00000008595/1-585 EIQRRPRHPP SLHGSTELL- LSRDPSPPLE PLEELSEDGG PAAEAFAHNC ENSTTRP00000007490/1-533 EIQRRPRHPP SLHGSAELL- LSRDPSPPLE PLEELSGDGG AAAEAFAHNC bmy_00799T0/1-550 EIQRRPRHPP SLHGSTELL- LSRDPSPPLE PLEELSGDGG AAAEAFAHNC BACU011896/1-616 EIQRRPRHPP SLHGSTELL- LSRDPSPPLE PLEELSGDGG AAAEAFAHNC 251 300 ENSP00000350934/1-569 DDSASISSFS LGGGVGSSSS LPQSRQGLSP EQEETASLVS TGTLVPEGIY ENSBTAP00000008595/1-585 DDSASISSFS LGGGASGRAS LPRSRQGLSP EQEETASLVS TGTLVPEGIY ENSTTRP00000007490/1-533 DDSASISSFS LGGGASGSAS LPRSRHGLSP EQEETASLVS TGTLVPEGIY bmy_00799T0/1-550 DDSASISSFS LGGGASGSAS LPRSRHGLSP EQEETASLVS TGTLVPEGIY BACU011896/1-616 DDSASISSFS LGGGASGSAS LPRSRHGLSP EQEETASLVS TGTLVPEGIY 301 350 ENSP00000350934/1-569 LPPPGYQLVP DTQWEQLQTE GRQLQKDLES VSRERDELQE GLRRSNEDCA ENSBTAP00000008595/1-585 LPPPGYQLVP DNQWEQLQLE GRQLQKDLES ISRERDELQE GLRRSNEDCA ENSTTRP00000007490/1-533 LPPPGYQLVP DNQWEQLQVE GRQLQKDLES ISRERDELQE GLRRSNEDCA bmy_00799T0/1-550 LPPPGYQLVP DNQWEQL--- --QLQKDLES ISRERDELQE GLRRSNEDCA BACU011896/1-616 LPPPGYQLVP DNQWEQLQVE GRQLQKDLES ISRERDELQE GLRRSNEDCA 351 400 ENSP00000350934/1-569 KQMQVLLAQV QNSEQLLRTL QGTVSQAQER VQLQMAELVT THKCLHHEVK ENSBTAP00000008595/1-585 KQMQVLLAQV QNSEQLLRTL QGTVSQAQER VQLQMAELAN SHKCLSHEVK ENSTTRP00000007490/1-533 KQMQVLLAQV QNSEQLLRTL QGTVSQAQER VQLQMAELAT SHKCLSHEVK bmy_00799T0/1-550 KQMQVLLAQV QNSEQLLRTL QGTVSQAQER VQLQM----- ---------- BACU011896/1-616 KQMQVLLAQV QNSEQLLRTL QGTVSQAQER VQLQMAELAT SHKCLSHEVK 401 450 ENSP00000350934/1-569 RLNEENQGLR AEQLPSSAPQ GSQQEQGEEE SLPSSVPELQ QLLCCTRQEA ENSBTAP00000008595/1-585 RLTEENQGLR AEQPSSSVPR VLEQDEGWEE SLPSSLPELQ QLVRRTQQEA ENSTTRP00000007490/1-533 RLTEENQGLR AEQPPSSAPR GLEQDEGQEE SLPGSLLELR QLVRRTQQEA bmy_00799T0/1-550 ---------- ---------- ---------- -------ELR QLVRRTQQEA BACU011896/1-616 RLTEENQGLR AEQPPSSAPR GLEQDEGQEE SLPSSLLELR QLVRHTQQEA 451 500 ENSP00000350934/1-569 RARLQAQEHG AERLRIEIVT LREALEEETV ARASLEGQLR VQREETEVLE ENSBTAP00000008595/1-585 RARQQAQEHE AERLRIEIVT LREALDEETA ARASLEGQLR VQREETEVLE ENSTTRP00000007490/1-533 RAHQQAQEHE AERLRIEIVT LREALEEETA ARASLEGQLR VQREETEVLE bmy_00799T0/1-550 RAHQQAQEHE AERLRIEIVT LREALEEETA ARASLEGQLR VQREETEVLE BACU011896/1-616 RAHQQAQEHE AERLRIEIVT LREALEEETA ARASLEGQLR VQREETEVLE 501 550 ENSP00000350934/1-569 ---------- ---------- ---------- -ASLCSLRTE MERVQQEQSK ENSBTAP00000008595/1-585 ---------- ---------- ---------- -ASLCSLRME MERVQEEQSK ENSTTRP00000007490/1-533 ---------- ---------- ---------- -ASLCSLRME MERVQQEQSK bmy_00799T0/1-550 ---------- ---------- ---------- -ASLCSLRME MERVQQEQSK BACU011896/1-616 GEYGLEPVPD RAGRGKERGR GPDVLALPDF PASLCSLRME MERVQQEQSK 551 600 ENSP00000350934/1-569 ---------- --------AQ LPDLLSEQRA KVLRLQAELE TSEQVQRDFV ENSBTAP00000008595/1-585 AKRQEVLRPS QGTGRTEEAQ LTDLLSEQRA KMLRLQAELE TSEQVQRDFV ENSTTRP00000007490/1-533 ---------- --------AQ LTDLLSEQRA KMLRLQAELE TSEQVQRDFV bmy_00799T0/1-550 ARQQEVLRQP PGSGRTEEAQ LTDLLLEQRA KMLRLQAELE TSEQVQRDFV BACU011896/1-616 ARQQEVLRQP PGSGRTEEAQ LTDLLSEQRA KMLRLQAELE TSEQVQRDFV 601 650 ENSP00000350934/1-569 RLSQALQVRL ERIRQAETLE QVRSIMDEAP LTDVRDIKDT ENSBTAP00000008595/1-585 RLSQALQVRL ERIRQAGSLE QVRGIIDEAP LRDVRDIKDT ENSTTRP00000007490/1-533 RLSQALQVRL ERIRQAESLE QVRSIMDEAP LRDVGDIKDT bmy_00799T0/1-550 RLSQALQVRL ERIRQAESLE QVRSIMDEAP LRDVRDIKDT BACU011896/1-616 RLSQALQVRL ERIRQAESLE QVRSIMDEAP LRDVRDIKDT