KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:44 2014 Check: 00 .. Name: ENSP00000437940/1-557 Len: 608 Check: 1184 Weight: 1.00 Name: ENSTTRP00000007491/1-562 Len: 608 Check: 8969 Weight: 1.00 Name: ENSBTAP00000008598/1-548 Len: 608 Check: 4367 Weight: 1.00 Name: bmy_00800T0/1-459 Len: 608 Check: 2270 Weight: 1.00 Name: BACU011895/1-535 Len: 608 Check: 9574 Weight: 1.00 // 1 50 ENSP00000437940/1-557 MPPPRLLFFL -LFLTPMEVR PEEPLVVKVE EGDNAVLQCL KGTSDGPTQQ ENSTTRP00000007491/1-562 MPPPLLLFFL HLFLTPMGVR PQETHLLEAK EGGNAVLPCL DGLSDGPPEQ ENSBTAP00000008598/1-548 ---------- ----PASTLP PHPVPLSLST EGGDAVLPCL EGSSAGPPEQ bmy_00800T0/1-459 ---------- ---------- ---------- ---------- ---------- BACU011895/1-535 ---------- ------MGVG PQETHLLEAK EGGNAVLPCL EGLSDGPPEQ 51 100 ENSP00000437940/1-557 LTWSRESPLK PFLKLSLGLP GLGIHMRPL- ------AIWL FIFNVSQQMG ENSTTRP00000007491/1-562 LAWFRGSQST PFLELSLGLP GLGIHVGPL- ------GTLL FIFNVSDQMG ENSBTAP00000008598/1-548 LAWFRGSQTT PFLNLSLGLP GLGIHVGPLG TLKEPQGTLL FLFNVSKHMG bmy_00800T0/1-459 ---------- ---------- ---------- ---------- --------MG BACU011895/1-535 LAWFRGSQST PFLELRLGLP GLGIHVGPLG TLKEPQGTLL FIFNVSDQMG 101 150 ENSP00000437940/1-557 GFYLCQPGPP SEKAWQPGWT VNVEGSGELF RWNVSDLGGL GCGLKNRSSE ENSTTRP00000007491/1-562 GFYLCQRGPF SDQAWQSGWT VSVKGSGELF RWNASDLNDP SCGLRNRSSE ENSBTAP00000008598/1-548 GFYLCQPGLS SEQGWQPGWT VSVQGSGKLF RWNASDLNDP SCDLRNKTSK bmy_00800T0/1-459 GFYLCQPGPS SEPAWQPGWT VSVKGSGELF RWNASDLNDP SCGLGDRSSE BACU011895/1-535 GFYLCQPGPS SEQAWQPGWT VSVKGSGELF RWKASDLNDP SCGLGDRSSE 151 200 ENSP00000437940/1-557 GPSSPSGKLM SPKLYVWAKD R-PEIWEGEP PCLPPRDSLN QSLSQDLTMA ENSTTRP00000007491/1-562 GPRPYSGHPT RSQVYVWAKN S-PKILHTDS ACAPPNSTLN QSNNHDLTVA ENSBTAP00000008598/1-548 GPRSSSGHPT KSQLNVWGTD HFKEISHADL PCAPPNSTLN HSDNRDLTVA bmy_00800T0/1-459 GPRPSSGHPT RSQIYVWAKD H-PEILHTDS ACAPPNGTLN QSNNHDLTVA BACU011895/1-535 GPRPSSGHPT RSQLYVWAKN R-PEILHTDS ACAPPNGTLN QSNNHDLTVA 201 250 ENSP00000437940/1-557 PGSTLWLSCG VPPDSVSRGP LSWTHVHPKG PK-SLLSLEL KDDRPARDMW ENSTTRP00000007491/1-562 PGSTLSLSCG ASRTSMARGP ISWIHVRPKK PRIKLLSLNL SEDAQLREMW ENSBTAP00000008598/1-548 PGSTLLLSCG ASHTSLVRGS VSWIHKYPMK PEVKLLSLYV SKHAQLREMW bmy_00800T0/1-459 PGSTLSLSCG ASRTSLARGP ISWIHVRPKK PGIKLLSLNL SEDAQLREMW BACU011895/1-535 PGSTLSLSCG ASRTSLARGP ISWIHVRPKK PSIKLLSLNL SEDAQLREMW 251 300 ENSP00000437940/1-557 VMET-----G LLL-PRATAQ DAGKYYCHRG NLTMSFHLEI TARPVLWHWL ENSTTRP00000007491/1-562 VMGNLGGKAV LLL-PETTAQ DAGIYHCNHG NVTTQMQLKV TAQSAVWHWL ENSBTAP00000008598/1-548 VMGTLGGKVV LLLRTEAEKQ DASLGSSSHS SFPLPV---- ------WHWL bmy_00800T0/1-459 VMGTLGGKAV LLL-PETTAQ DAGIYYCNHG NVTTQVQLKV TAQSGS---S BACU011895/1-535 VMGTLGGKAV LLL-PEITAQ DAGIYHCNHG NVTTQVQLKV TAQSAVWHWL 301 350 ENSP00000437940/1-557 LRTGGWKVSA VTLAYLIFCL CSLVGILHLQ RALVLRRKRK RMTDPTRRFF ENSTTRP00000007491/1-562 LETGGWIVPV VTLVYLIFCL ASLVGFLHLR RALILRRKRK RMTDPTRRFF ENSBTAP00000008598/1-548 LETGVWKVPV VTLIYLIFCL TSLVGFLYLR RALILRRKRK RMTDPNRRFF bmy_00800T0/1-459 LNLECPLQSP PGLA------ ---------- --------SQ CNSPSSARFF BACU011895/1-535 LETGCWIVPV VTLVYLIFCL GALVGFLHLR RALILRRKRK RMTDPTRRFF 351 400 ENSP00000437940/1-557 KVTPPPGSGP QNQYGNVLSL PTPTSGLGRA QRWAAGLGGT APSYGNPSSD ENSTTRP00000007491/1-562 KVTPPPGNGA QNQYGNMLSL STPHSGTGRA LRWAAGLGAT VPPYGNPRSD ENSBTAP00000008598/1-548 KVTPPPGNGA NSQYGNMLSL SMPHSGTGRA LRWAAGLGAA APSYGNPRSD bmy_00800T0/1-459 KVTPPPGNGA QNQYGNMLSL STPHSGTGRA LRWAAGLGAT VPSYGNPRSD BACU011895/1-535 KVTPPPGNGA QNQYGNMLSL STPHSGTGRA LRWAAGLGAT VPSYGNPRSD 401 450 ENSP00000437940/1-557 VQADGALGSR SPPGVGPEEE EGEGYEEPDS EEDSEFYEND SNLGQDQLSQ ENSTTRP00000007491/1-562 VQEDRASESR PP---GPXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000008598/1-548 VQEARAAGSR SPPGPGPEEE EGEAYEEPDS EEGSEFYEND SNLGQDQLSQ bmy_00800T0/1-459 VQEARAAGSR SPPGTGPEEE EAEAYEEPDS EEGSEFYEND SSLGQNQLSQ BACU011895/1-535 VQEARAAGSR SPPGTGPEEE EAEAYEEPDS EEGSEFYEND SNLGQDQLSQ 451 500 ENSP00000437940/1-557 DGSGYENPED EPLGPEDEDS FSN-AESYEN EDEELTQPVA RTMDFLSPHG ENSTTRP00000007491/1-562 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000008598/1-548 DGSGYENPEE GSLDPQDEDS FSNGAESYEN EDEELAPTVT RTTDLLSPHG bmy_00800T0/1-459 DGSGYENPEE GVLGPEDEDS FSNGNLGYSW GLIDLGEPTG ---------- BACU011895/1-535 DGSGYENPEE GVLGPEDEDS FSNAAESYEN EDEELAQPVA RTT------- 501 550 ENSP00000437940/1-557 SAWDPSREAT SLAGSQSYED MRGILYAAPQ LRSIRGQ--- -----PG--- ENSTTRP00000007491/1-562 XXXXXXXXXX XXXXSQSYED MRGILYAVPQ LRFVQAQ--- -----PG--- ENSBTAP00000008598/1-548 SAWDPSREAA SL-GSQSYED MRGILYAAPQ LRFVRAQ--- -----PG--- bmy_00800T0/1-459 -LWIPYRARV VP-------- --GVLFFRQQ LSLMRMRMKN CPSQLPGQQV BACU011895/1-535 ---------- ---GSQSYED MRGILYAAPQ LRFVQAQ--- -----PG--- 551 600 ENSP00000437940/1-557 ---------- ---------- PNHEE---DA DSYENMDNPD GPDPAWGGGG ENSTTRP00000007491/1-562 ---------- ---------- PSHEE---DA DSYENMDNPD GPEPAWGGGG ENSBTAP00000008598/1-548 ---------- ---------- ANHEE---DA DSYENMDNPD GPEPAWGGGA bmy_00800T0/1-459 CVRMVTFLPD FLSPHGSAWD PSREATSLDA DSYENMDNPD GPEPAWGGGG BACU011895/1-535 ---------- ---------- PSHEE---DA DSYENMDNPD GPEPAWRGGG 601 650 ENSP00000437940/1-557 RMGTWSTR ENSTTRP00000007491/1-562 HMGTWSTR ENSBTAP00000008598/1-548 RIG-WSTR bmy_00800T0/1-459 HMGTWSN- BACU011895/1-535 HMGTWSN-