KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:35:45 2014 Check: 00 .. Name: ENSP00000265598/1-416 Len: 436 Check: 7963 Weight: 1.00 Name: ENSBTAP00000008608/1-433 Len: 436 Check: 8563 Weight: 1.00 Name: bmy_12633T0/1-357 Len: 436 Check: 608 Weight: 1.00 Name: ENSTTRP00000015660/1-410 Len: 436 Check: 4349 Weight: 1.00 // 1 50 ENSP00000265598/1-416 MPRQLSAAAA LFASLAVIL- ---HDGSQMR AKAFPETRDY SQPTAAATVQ ENSBTAP00000008608/1-433 MSWQIPAVVM SFMALVAIWY YDSHYNSHMQ AKVFPEITGY SSP---TTGQ bmy_12633T0/1-357 MSWQLSAVVV LFVSLTVIL- ---HYGSHMR AKAFPEITGY SPP---ATVQ ENSTTRP00000015660/1-410 MSWQLSAVVV LFVSLAVIL- ---HYGGHVR AKAFPEITGY SPP---ATVQ 51 100 ENSP00000265598/1-416 DIKKP-VQQP AKQAPHQTLA ARFMDGHITF QTAA------ ------TVKI ENSBTAP00000008608/1-433 ATVKPSLLQP TNYVPHKTAA ARSTDGHVTS QTVAKTSSSE TLTTNTTIDV bmy_12633T0/1-357 ATAKPSLLQP TNRVPQKTLA TRSTDGHVTS QXAVTTSTSE TLTTHTTIKI ENSTTRP00000015660/1-410 TTTKPCLLQP THRVP-QTLA ARSTDGHVTS QIAV------ ------TVKI 101 150 ENSP00000265598/1-416 P-TTTPATTK NTATTSPITY TLVTTQATPN NSHTAPPVTE VTVGPSLAPY ENSBTAP00000008608/1-433 LATTSPVTTK STLPTTPTTH TLVTTLATPN KSHVTFPVTE AKVGLSVGPS bmy_12633T0/1-357 LATASLVTTD STPSTSPTAH TLVTALATPN KSHTAAPVTE ATISPSTGPS ENSTTRP00000015660/1-410 PATASLVTAD STPSTSPTAH TLVTTLATPN KSHTAAPVTE ATISPSTGPS 151 200 ENSP00000265598/1-416 SLPPTITPPA HTTGTSSSTV SHTTGNTTQP SNQTTLPATL SIALHKSTTG ENSBTAP00000008608/1-433 SPPVTVNPTA HTTGNRPSTA SHTTGKTTQL SNQTTLPATL STSPHNITTS bmy_12633T0/1-357 PPPPTVTPPA HRTGARPSTV GHTTGKTTQL RNETTLPAPL STSPHNSTTS ENSTTRP00000015660/1-410 PPPSTVTPPA HRTGARPSTV SHTTGKTTQL SNQTTLPATL STTPHNSTTS 201 250 ENSP00000265598/1-416 QKPVQPTHAP GTTAAAHNTT RTAAPASTVP GPTLAPQPSS VKTGIYQVLN ENSBTAP00000008608/1-433 QKPTQPTHTP GPTTATYNTT QTASPATIAP RPTLAPQPLS PKTGIYQVHN bmy_12633T0/1-357 RKPTQPPHAP GPT----NTT QTTSPATVAP RPTLAPQPSS AKTGIYQVLN ENSTTRP00000015660/1-410 QKPTQPTHTP EPT----NTT HRASPATIAP RPTLAPQPSS AKTGIYQVLN 251 300 ENSP00000265598/1-416 GSRLCIKAEM GIQLIVQDKE SVFSPRRYFN IDPNATQASG NCGTRKSNLL ENSBTAP00000008608/1-433 GSKLCIKAEM GIQLTVQDSV SVFSPQKYFN IDPNATQASG NCGSRKSNLL bmy_12633T0/1-357 GSQLCIKAEM GIELTVQDTE SVFSPQKYFN IDPNATQSSG NCGFRKSNLL ENSTTRP00000015660/1-410 GSKLCIKAEM GIELTVQDTE SVFSPQKYFN IDPNATQSSG NCGFRKSNLL 301 350 ENSP00000265598/1-416 LNFQGGFVNL TFTKDEESYY ISEVGAYLTV SDPETIYQGI KHAVVMFQTA ENSBTAP00000008608/1-433 LNFQGGFVNL TFTKGEKSYY ISEVEAYLTV SNPAKVYQGL KHAMMMFETV bmy_12633T0/1-357 LNFQGGFVNL TFTKA----- --------PL CSPRRALMPL GRDVALGNLA ENSTTRP00000015660/1-410 LNFQGGFVNL TFTKDENSYY ISEVEAYLTV SNPEKVYQGM KSAMVMFETV 351 400 ENSP00000265598/1-416 VGHSFKCVSE QSLQLSAHLQ VKTTDVQLQA FDFEDDHFGN VDECSSDYTI ENSBTAP00000008608/1-433 VGHSFKCVSE QSIQLSTYLQ LKTMNVQLQA FDFEDDHFGN ADECISDRNR bmy_12633T0/1-357 KVPFANHPKE EAVRMNRPIE IPS------- ---------- ---------- ENSTTRP00000015660/1-410 AGHSFKCVSE QSIQLSTHLQ LKTMNIQLQA FDFEGNHFGN VDECSSDYTI 401 450 ENSP00000265598/1-416 --VLPVIGAI VVGLCLMGMG VYKIRLRCQS SGYQRI ENSBTAP00000008608/1-433 REIPVAVGLS IAVLLAVLLT ACLVTRKRPS RGYERM bmy_12633T0/1-357 -------GQK ETGLL----- ---------- ------ ENSTTRP00000015660/1-410 --VLPVIGAI VLGLFAVGLI VYAIRLRRES SGYQRI