KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:50 2014 Check: 00 .. Name: ENSTTRP00000000853/1-526 Len: 579 Check: 4033 Weight: 1.00 Name: BACU002436/1-221 Len: 579 Check: 184 Weight: 1.00 Name: ENSP00000232766/1-574 Len: 579 Check: 2909 Weight: 1.00 Name: bmy_05614T0/1-514 Len: 579 Check: 7859 Weight: 1.00 Name: ENSBTAP00000008633/1-579 Len: 579 Check: 6482 Weight: 1.00 // 1 50 ENSTTRP00000000853/1-526 ---------- ---------- ---------- ---------- ---IGDHKFS BACU002436/1-221 ---------- ---------- ---------- ---------- ---------- ENSP00000232766/1-574 MVEDGAEELE DLVHFSVSEL PSRGYGVMEE IRRQGKLCDV TLKIGDHKFS bmy_05614T0/1-514 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008633/1-579 MVEDGAEELE DLVHFSVSEL PSRGYGVMEE IRRQGKLCDV TLKIGDHKFS 51 100 ENSTTRP00000000853/1-526 AHRIVLAASI PYFHAMFTND MMECKQDEIV MQGMDPSALE ALINFAYNGH BACU002436/1-221 ---------- -----MFTND MMECKQDEIV MQGMDPSALE ALINFAYNGH ENSP00000232766/1-574 AHRIVLAASI PYFHAMFTND MMECKQDEIV MQGMDPSALE ALINFAYNGN bmy_05614T0/1-514 ---------- -----MFTND MMECKQDEIV MQGMDPSALE ALINFAYNGH ENSBTAP00000008633/1-579 AHRIVLAASI PYFHAMFTND MMECKQDEIV MQGMDPSALE ALINFAYNGH 101 150 ENSTTRP00000000853/1-526 LAIDQQNVQS LLMGASFLQL QSIKDACCTF LRERXXXXXX XXXXXXXXXX BACU002436/1-221 LAIDQQNVQS LLMGASFLQL QSIKDACCTF LRE------- ---RPLGAII ENSP00000232766/1-574 LAIDQQNVQS LLMGASFLQL QSIKDACCTF LRERLHPKNC LGVRQFAETM bmy_05614T0/1-514 LAIDQQNVQS LLMGASFLQL QSIKDACCTF LRERLHPKNC LGVRQFAETM ENSBTAP00000008633/1-579 LAIDQQNVQS LLMGASFLQL QSIKDACCTF LRERLHPKNC LGVRQFAETM 151 200 ENSTTRP00000000853/1-526 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002436/1-221 ICSF------ ---------- ---------- ---------- ---------R ENSP00000232766/1-574 MCAVLYDAAN SFIHQHFVEV SMSEEFLALP LEDVLELVSR DELNVKSEEQ bmy_05614T0/1-514 MCAVLYDAAN SFIHQHFVEV SMSEEFLALP LEDVLELVSR DELNVKSEEQ ENSBTAP00000008633/1-579 MCALLYDAAN SFIHQHFVEV SMSEEFLALP LEDVLELVSR DELNVKSEEQ 201 250 ENSTTRP00000000853/1-526 MFEAVLAWIR YDQEQRD--L PELLNILP-- -CRPQFLSDR VQQDDLVRCC BACU002436/1-221 VFEAVLAWVR YDPEQRGPCL PELLSNIRLP LCRPQFLSDR VQQDDLVRCC ENSP00000232766/1-574 VFEAALAWVR YDREQRGPYL PELLSNIRLP LCRPQFLSDR VQQDDLVRCC bmy_05614T0/1-514 VFEAVLAWVR YDREQRGPCL PELLSNIRLP LCRPQFLSDR VQQDDLVRCC ENSBTAP00000008633/1-579 VFEAVLTWVR YDRDQRGPCL PELLSNIRLP LCRPQFLSDR VQQDDLVRCC 251 300 ENSTTRP00000000853/1-526 HKCXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX-- BACU002436/1-221 HKC------- ---------- ---------- ---------- ---------- ENSP00000232766/1-574 HKCRDLVDEA KDYHLMPERR PHLPAFRTRP RCCTSIAGLI YAVGGLNS-- bmy_05614T0/1-514 HKCRDLVDEA KDYHLMPERR PHLPAFRTRP RCCTSIAGLI YAVGGLNSAA ENSBTAP00000008633/1-579 HKCRDLVDEA KDYHLMPERR PHLPAFRTRP RCCTSIAGLI YAVGGLNSAA 301 350 ENSTTRP00000000853/1-526 ---XXDSLNV VEVFDPIANR WEKCHPMTTA RSRVGVAVVN GLLYAIGGYD BACU002436/1-221 ---------- ---------- ---------- ---------- ---------- ENSP00000232766/1-574 ---AGDSLNV VEVFDPIANC WERCRPMTTA RSRVGVAVVN GLLYAIGGYD bmy_05614T0/1-514 NFYAGDSLNV VEVFDPIANR WEKCRPMTTA RSRVGVAVVN GLLYAIGGYD ENSBTAP00000008633/1-579 NFYAGDSLNV VEVFDPVANR WEKCHPMSTA RSRVGVAVVN GLLYAIGGYD 351 400 ENSTTRP00000000853/1-526 GQLRLSTVEV YNPETDTWTR VGSMNSKRSA MGTVVLDGQI YVCGGYDGNS BACU002436/1-221 ---------- ---------- --------SA MGTVVLDGQI YVCGGYDGSS ENSP00000232766/1-574 GQLRLSTVEA YNPETDTWTR VGSMNSKRSA MGTVVLDGQI YVCGGYDGNS bmy_05614T0/1-514 GQLRLSTVEV YNPETDTWTR VGSMNSKRSA MGTVVLDGQI YVCGGYDGNS ENSBTAP00000008633/1-579 GQLRLSTVEV YNPEMDTWTR VRSMNSKRSA MGTVVLDGQI YVCGGYDGNS 401 450 ENSTTRP00000000853/1-526 SLNSVETYSP ETDKWTVVTP MSSNRSAAGV TVFEGRIYVS GGHDGLQIFN BACU002436/1-221 SLNSVEAYSP ETD------- -NSAESQVAE MSSKGRPIVD SGRRASQV-- ENSP00000232766/1-574 SLSSVETYSP ETDKWTVVTS MSSNRSAAGV TVFEGRIYVS GGHDGLQIFS bmy_05614T0/1-514 SLNSVEAYSP ETDKWTVVTP MSSNRSAAGV TVFEGRIYVS GGHDGLQIFN ENSBTAP00000008633/1-579 SLSSVETYSP ETDKWTVVTP MSSNRSAAGV TVFEGRIYVS GGHDGLQIFS 451 500 ENSTTRP00000000853/1-526 SVEHYNHHTA TWHPAAGMLN KRCRHGAASL GSKMFVCGGY DGSGFLSSAE BACU002436/1-221 ---------- -----GGQQE ER-------L GDKKEL---- ---------- ENSP00000232766/1-574 SVEHYNHHTA TWHPAAGMLN KRCRHGAASL GSKMFVCGGY DGSGFLSIAE bmy_05614T0/1-514 SVEHYNHHTA TWHPAAGMLN KRCRHGAASL GSKMFVCGGY DGSGFLSIAE ENSBTAP00000008633/1-579 SVEHYNHHTA TWHPAAGMLN KRCRHGAASL GSKMFVCGGY DGSGFLSIAE 501 550 ENSTTRP00000000853/1-526 VYSSVADQWC LIVPMHTRRS RVSLVASCGR LYAVGGYDGQ SNLSSVEMYD BACU002436/1-221 ---------C VVEEQVLSQC R--------- ---------- ---------- ENSP00000232766/1-574 MYSSVADQWC LIVPMHTRRS RVSLVASCGR LYAVGGYDGQ SNLSSVEMYD bmy_05614T0/1-514 VYSSVADQWC LIVPMHTRRS RVSLVASCGR LYAVGGYDGQ SNLSSVEMYD ENSBTAP00000008633/1-579 VYSSVADQWC LIVPMLTRRS RVSLVASCGR LYAVGGYDGQ SNLSSVEMYD 551 600 ENSTTRP00000000853/1-526 PDTDRWTFMA PMACHEGGVG VGCIPLLTI BACU002436/1-221 ---------- ---------- --------- ENSP00000232766/1-574 PETDCWTFMA PMACHEGGVG VGCIPLLTI bmy_05614T0/1-514 PDTDRWTFMA PMACHEGGVG VGCIPLLTI ENSBTAP00000008633/1-579 PDTDRWTFMA PMACHEGGVG VGCIPLLTI