KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:51 2014 Check: 00 .. Name: ENSTTRP00000005212/1-544 Len: 606 Check: 4546 Weight: 1.00 Name: ENSP00000332170/1-544 Len: 606 Check: 8816 Weight: 1.00 Name: ENSBTAP00000008644/1-544 Len: 606 Check: 249 Weight: 1.00 Name: bmy_01331T0/1-521 Len: 606 Check: 6156 Weight: 1.00 Name: BACU004982/1-549 Len: 606 Check: 9630 Weight: 1.00 // 1 50 ENSTTRP00000005212/1-544 MGPAARLAAL LAVLALQAGD LAGVATRGDT FSALTSVARA LAPERRLLGL ENSP00000332170/1-544 MGPGARLAAL LAVLALGTGD PERAAARGDT FSALTSVARA LAPERRLLGL ENSBTAP00000008644/1-544 MGPAARLAAL LAVLAFRAGD PAEVAARGDT FSALTSVARA LAPERRLLGL bmy_01331T0/1-521 MGPAARLAAL LAVLTLQAGN PAGVAARGDT F--------- ---------- BACU004982/1-549 MGLTARLAAL LAVLTLQAGD PAGVAARGDT FSALTSVARA LAPERRLLGL 51 100 ENSTTRP00000005212/1-544 LRRYLRGEEA RLRDLTRFYD KVLSLHEDSA TPVSNPLLAF TLIKRLQSDW ENSP00000332170/1-544 LRRYLRGEEA RLRDLTRFYD KVLSLHEDST TPVANPLLAF TLIKRLQSDW ENSBTAP00000008644/1-544 LRRYLRGEEA RLRDLTRFYH KVLSLHEDSA TPVSNPLLAF TLIKRLQSDW bmy_01331T0/1-521 ---------- --------YD KVLSLHEDSA TPVSNPLLAF TLIKRLQSDW BACU004982/1-549 LRRYLRGEEA RLRDLTRFYD KVLSLHEDSA TPVSNPLLAF TLIKRLQSDW 101 150 ENSTTRP00000005212/1-544 KNVVHSLEAS ENIRALKDGY EKVEQDLPAF EDLEGAARAL MRLQDVYMLS ENSP00000332170/1-544 RNVVHSLEAS ENIRALKDGY EKVEQDLPAF EDLEGAARAL MRLQDVYMLN ENSBTAP00000008644/1-544 KNVVHSLEAS ENIRALKDGY ERVEQDLPAF EDLEGAARAL MRLQDVYMLN bmy_01331T0/1-521 KNVVHSLEAS ENIRALKDGY EKVEQDLPAF EDLEGAARAL MRLQDVYMLS BACU004982/1-549 KNVVHSLEAS ENIRALKDGY EKVEQDLPAF EDLEGAARAL MRLQDVYMLS 151 200 ENSTTRP00000005212/1-544 VKGLARGVFQ RVTGCAVTDL YSPRRLFSLT GDDCFQVGKV AYDMGDYYHA ENSP00000332170/1-544 VKGLARGVFQ RVTGSAITDL YSPKRLFSLT GDDCFQVGKV AYDMGDYYHA ENSBTAP00000008644/1-544 VKGLARGVFQ RVTGSAVTDL YSPRRLFSLT GDDCFQVGKV AYDMGDYYHA bmy_01331T0/1-521 VKGLARGVFQ RVTGCAVTDL YSPRRLFSLT GDDCFQVGKV AYDMGDYYHA BACU004982/1-549 VKGLARGVFQ SVTGCAVTDL YSPRRLFSLT GDDCFQVGKV AYDMGDYYHA 201 250 ENSTTRP00000005212/1-544 IPWLEEAVSL FRGSYGEWKT EDEASLEDAL DHLAFAYFQV GNISCALSLS ENSP00000332170/1-544 IPWLEEAVSL FRGSYGEWKT EDEASLEDAL DHLAFAYFRA GNVSCALSLS ENSBTAP00000008644/1-544 IPWLEEAVSL FRGSYGEWKT EDEASLEDAL DHLAFAYFQA GNVLCALNLS bmy_01331T0/1-521 IPWLEEAV-- ---------- ---------- ---------- GNISCALSLS BACU004982/1-549 IPWLEEAVSL FRGSYGEWKT EDEASLEDAL DHLAFAYFQV GNISCALSLS 251 300 ENSTTRP00000005212/1-544 REFLLYXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000332170/1-544 REFLLYSPDN KRMARNVLKY ERLLAESPNH VVAEAVIQRP NIPHLQTRDT ENSBTAP00000008644/1-544 REFLLYSPDN KRVARNVLKY EKLLAESPNQ AVAETVMQRP NVPHLQTRDT bmy_01331T0/1-521 REFLLYSPDN KRMARNVLKY EKLLAESPNQ AVAEAVIQRP NVPHLRTRDT BACU004982/1-549 REFLLYSPDN KRMARNVLKY EKLLAESPNQ AVAEAVIQRP NVPHLQTRDT 301 350 ENSTTRP00000005212/1-544 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000332170/1-544 YEGLCQTLGS QPTLYQIPSL YCSYETNSNA YLLLQPIRKE VIHLEPYIAL ENSBTAP00000008644/1-544 YEGLCQTLGS QPTHYRIPSL YCSYETSSSP YLLLQPVRKE VIHLEPYVVL bmy_01331T0/1-521 YEELCQTLGS QPTHYQIPRL YCSYETSSSP YLLLQPVRKE VIHLEPYVVL BACU004982/1-549 YEELCQTLGS QPTHYQIPRL YCSYETSSSP YLLLQPVRKE VIHLEPYVVL 351 400 ENSTTRP00000005212/1-544 XXXXXXXXXX XXXXXXXXXX LQRSVVASGE KQLPVEYRIS KSAWLKDTVD ENSP00000332170/1-544 YHDFVSDSEA QKIRELAEPW LQRSVVASGE KQLQVEYRIS KSAWLKDTVD ENSBTAP00000008644/1-544 YHDFVSDAEA QTIRGLAEPW LQRSVVASGE KQLPVEYRIS KSAWLKDTVD bmy_01331T0/1-521 YHDFVSDTEA QKIRGLAEPW LQRSVVASGE KQLPVEYRIS KSAWLKDTVD BACU004982/1-549 YHDFVSDTEA QKIRGLAEPW LQRSVVASGE KQLPVEYRIS KSAWLKDTVD 401 450 ENSTTRP00000005212/1-544 PVLVTLDHRI ASLTGLDVQP PYAEYLQVVN YGIGGHYEPH FDHATSPTSP ENSP00000332170/1-544 PKLVTLNHRI AALTGLDVRP PYAEYLQVVN YGIGGHYEPH FDHATSPSSP ENSBTAP00000008644/1-544 PVLVTLDHRI AALTGLDVQP PYAEYLQVVN YGIGGHYEPH FDHATSPSSP bmy_01331T0/1-521 PVLVTLDHRI ASLTGLDVQP PYAEYLQVVN YGIGGHYEPH FDHATSPTSP BACU004982/1-549 PVLVTLDHRI ASLTGLDVQP PYAEYLQVVN YGIGGHYEPH FDHAT----- 451 500 ENSTTRP00000005212/1-544 LYRMNSGNRV ATFMIYLSSV EAGGATAFIY GNFSVPVVKN AALFWWNLHR ENSP00000332170/1-544 LYRMKSGNRV ATFMIYLSSV EAGGATAFIY ANLSVPVVRN AALFWWNLHR ENSBTAP00000008644/1-544 LYRMNSGNRV ATFMIYLSSV EAGGATAFIY GNFSVPVVKN AALFWWNLHR bmy_01331T0/1-521 LYRMNSGNRV ATFMIYLSSV EAGGATAFIY GNFSVPVVKN AALFWWNLHR BACU004982/1-549 ---------- ------LSSV EAGGATAFIY GNFSVPVVKN AALFWWNLHK 501 550 ENSTTRP00000005212/1-544 SGEGDGDTLH AGCPVLVGDK ---------- --WVANKWIH E--------- ENSP00000332170/1-544 SGEGDSDTLH AGCPVLVGDK ---------- --WVANKWIH E--------- ENSBTAP00000008644/1-544 SGEGDGDTLH AACPVLVGDK ---------- --WVANKWIH E--------- bmy_01331T0/1-521 SGEGDGDTLH AGCPVL---- ---------- --WPTSGYTS MDRNSADLAV BACU004982/1-549 SGKGDGGTLH AGCPVLVGDK WGKACLSGHG NWWPTSGYTS MDRNSADLAA 551 600 ENSTTRP00000005212/1-544 --------YG QEFRRPCSSS PED------- ---------- ---------- ENSP00000332170/1-544 --------YG QEFRRPCSSS PED------- ---------- ---------- ENSBTAP00000008644/1-544 --------YG QEFRRPCSSR PED------- ---------- ---------- bmy_01331T0/1-521 QALKTKMLAE RSWRSPLAFQ RSQKPKAMVR EEKGEQASGG GPLSALPIPC BACU004982/1-549 RALKTKMLAE RSWRSPLAFQ ---------- ---------- ---------- 601 650 ENSTTRP00000005212/1-544 ------ ENSP00000332170/1-544 ------ ENSBTAP00000008644/1-544 ------ bmy_01331T0/1-521 KWETRK BACU004982/1-549 ------