KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:35:55 2014  Check: 00 ..

 Name: ENSP00000385494/1-129     Len:    200  Check:  3703  Weight:  1.00
 Name: ENSBTAP00000008659/1-200  Len:    200  Check:  3919  Weight:  1.00
 Name: ENSTTRP00000015645/1-128  Len:    200  Check:  2437  Weight:  1.00
 Name: bmy_17851T0/1-178         Len:    200  Check:  3501  Weight:  1.00
 Name: BACU008819/1-200          Len:    200  Check:  4389  Weight:  1.00

//


                          1                                                   50
ENSP00000385494/1-129     ------MLLG ---------- ---------- ---------- ---------- 
ENSBTAP00000008659/1-200  MVGSVWAALG LSLTCISAIS LVSPAWFQTT TFSFGVLTYC SWPQGDSWNQ 
ENSTTRP00000015645/1-128  ------MLLG ---------- ---------- ----GLL--- ---------- 
bmy_17851T0/1-178         MVGTVWAALG LSLTCISALS LISPAWFQTT TFSFGVLTYC SWPQGNSWNQ 
BACU008819/1-200          MVGSVWAALG LSLTCISALS LISPAWFQTT TFSFGVLTYC SWPQGNSWNQ 


                          51                                                 100
ENSP00000385494/1-129     ---------- ---------- -----GWLLL AFNAIFLLSW AVAPKGLCPR 
ENSBTAP00000008659/1-200  SCGTFQSLDD IPDFAWKVSA AMLLGGWLLL AFSAILLLSW ALAPKGLCPR 
ENSTTRP00000015645/1-128  ---------- ---------- ---------L AFSAILFLSW ALAPKGLCPR 
bmy_17851T0/1-178         SCGTFRSLDD IPDFAWKVRR ---------- ---------- --APKGLCPR 
BACU008819/1-200          SCGTFRSLDD IPDFAWKVSA VTLLGGWLLL AFNAILFLSW ALAPKGLCPR 


                          101                                                150
ENSP00000385494/1-129     RSSVPMPGVQ AVAATAMIVG LLIFPIGLAS PFIKEVCEAS SMYYGGKCRL 
ENSBTAP00000008659/1-200  RGSGPVPGVQ AAAAIATIMG LLVFPVSLAS PFAKEACVAS SMYHGGQCQL 
ENSTTRP00000015645/1-128  RGSGPMPGVQ ATAAIATIVG LLVFPISLAS PFAKEACLAS SVYHGGQCQL 
bmy_17851T0/1-178         RGSGPMPGLQ ATAAIATIVG LLVFPISLAS PFAKEACLAS SVYHSGQCQL 
BACU008819/1-200          RGSGPMPGLQ ATAAIATIVG LLVFPISLAS PFAKEACLAS SVYHSGQCRL 


                          151                                                200
ENSP00000385494/1-129     GWGYMTAILN AVLASLLPII SWPHTTKVQG RTIIFSSATE RIIFVPEMNK 
ENSBTAP00000008659/1-200  GWGYVTAILN AVLASLLPVI TRPHVTEVQR RTIFFSSDTE SIILVPETTK 
ENSTTRP00000015645/1-128  GWGYVTAIFH TVLASLLPMF RWLHMTEVQQ RTILFSSDTE SIILVPEMSK 
bmy_17851T0/1-178         GWGYVTAVFH AVLASLLPMF RWFHVTEVQR RTILFSSDTE SIILVPEMSK 
BACU008819/1-200          GWGYVTAIFY AVLASLLPTF RWLHVTEVQR RTILFSSDTE SIILVPEMSK