KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:58 2014 Check: 00 .. Name: BACU015194/1-488 Len: 679 Check: 8112 Weight: 1.00 Name: ENSBTAP00000008676/1-470 Len: 679 Check: 7306 Weight: 1.00 Name: bmy_00399T0/1-566 Len: 679 Check: 3952 Weight: 1.00 Name: ENSP00000376930/1-653 Len: 679 Check: 5244 Weight: 1.00 Name: ENSTTRP00000010698/1-651 Len: 679 Check: 3029 Weight: 1.00 // 1 50 BACU015194/1-488 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008676/1-470 ---------- ---------- ---------- ---------- ---------- bmy_00399T0/1-566 ---------- ---------- ---------- ---------- ---------- ENSP00000376930/1-653 MEPSGSEQLF EDPDPGGKSQ DAEARKQTES EQKLSKMTHN ALENINVIGQ ENSTTRP00000010698/1-651 MEPSGSEQLF EDPDPGGRSQ DAEARKQTES EQKLSKMTHN ALENINVIGQ 51 100 BACU015194/1-488 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008676/1-470 ---------- ---------- ---------- ---------- ---------- bmy_00399T0/1-566 ---------- ---------- ---------- MDLESQNACA EIDGVPTHPT ENSP00000376930/1-653 GLKHLFQHQR RRSSVSPHDV QQIQADPEPE MDLESQNACA EIDGVPTHPT ENSTTRP00000010698/1-651 GLKHLFQHQR RRSSVSPHDV QQIQADPEPE MDLESQNACA EIDGVPTHPT 101 150 BACU015194/1-488 ---------- --MRIGLNGN LYSLPDKIDL YFITSAVHK- ---------- ENSBTAP00000008676/1-470 ---------- ---------- ---------- --MEPSLSSE T--------- bmy_00399T0/1-566 ALNRVLQQIR VPPKMKRGTS LHSRRGKPEA PKGSPQINRK SGQEMATVMQ ENSP00000376930/1-653 ALNRVLQQIR VPPKMKRGTS LHSRRGKPEA PKGSPQINRK SGQEMTAVMQ ENSTTRP00000010698/1-651 ALNRVLQQIR VPPKMKRGTS LHSRRGKPEA PKGSPQINRK SGQEMATVMQ 151 200 BACU015194/1-488 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008676/1-470 ---------- ---------- ---------- ---------- ---------- bmy_00399T0/1-566 SGRPRSSSTT DAPTSSTVME IACAAAAAAA ACLPGDEASA ERAHMNLLNP ENSP00000376930/1-653 SGRPRSSSTT DAPTSSAMME IACAAAAAAA ACLPGEEGTA ER-------- ENSTTRP00000010698/1-651 SGRPRSSSTT DAPTSSTVME IACAAAAAAA ACLPGDEASA ER-------- 201 250 BACU015194/1-488 ---------- --------IE RLEVSSLAQT SSAVASSTDG SLHTDAVDGT ENSBTAP00000008676/1-470 ---------- --------IE RLEVSSLAQT SSAVASSTDG SLHTDSVDGT bmy_00399T0/1-566 NIGPEVHLAV QILNDVFHIE RLEVSSLAQT SSAVASSTDG SLHTDAVDGT ENSP00000376930/1-653 ---------- --------IE RLEVSSLAQT SSAVASSTDG SIHTDSVDGT ENSTTRP00000010698/1-651 ---------- --------IE RLEVSSLPQT SSAVASSTDG SLHTDAVDGT 251 300 BACU015194/1-488 PDPQRTKAAI AHLQQKILKL TEQIKIAQTA RDDNVAEYLK LANSADKQQA ENSBTAP00000008676/1-470 PDPQRTKAAI AHLQQKILKL TEQIKIAQTA RDDNVAEYLK LANSADKQQA bmy_00399T0/1-566 PDPQRTKAAI AHLQQKILKL TEQIKIAQTA RDDNVAEYLK LANSADKQQA ENSP00000376930/1-653 PDPQRTKAAI AHLQQKILKL TEQIKIAQTA RDDNVAEYLK LANSADKQQA ENSTTRP00000010698/1-651 PDPQRTKAAI AHLQQKILKL TEQIKIAQTA RDDNVAEYLK LANSADKQQA 301 350 BACU015194/1-488 ARIKQVFEKK NQKSAQTILQ LQKKLEHYHR KLREVEQNGI PRQPKDVFRD ENSBTAP00000008676/1-470 ARIKQVFEKK NQKSAQTIQQ LQKKLEHYHR KLREVEQNGI PRQPKDVFRD bmy_00399T0/1-566 ARIKQVFEKK NQKSAQTILQ LQKKLEHYHR KLREVEQNGI PRQPKDVFRD ENSP00000376930/1-653 ARIKQVFEKK NQKSAQTILQ LQKKLEHYHR KLREVEQNGI PRQPKDVFRD ENSTTRP00000010698/1-651 ARIKQVFEKK NQKSAQTILQ LQKKLEHYHR KLREVEQNGI PRQPKDVFRD 351 400 BACU015194/1-488 MHQGLKDVGA KVTGFSEGVV DSVKGGLSSF SQATHSAAGA VVSKPREIAS ENSBTAP00000008676/1-470 MHQGLKDVGA KVTGFSEGVV DSVKGGLSSF SQATHSAAGA VVSKPREIAS bmy_00399T0/1-566 MHQGLKDVGA KVTGFSEGVV DSVKGGLSSF SQATHSAAGA VVSKPREIAS ENSP00000376930/1-653 MHQGLKDVGA KVTGFSEGVV DSVKGGFSSF SQATHSAAGA VVSKPREIAS ENSTTRP00000010698/1-651 MHQGLKDVGA KVTGFSEGVV DSVKGGLSSF SQATHSAAGA VVSKPREIAS 401 450 BACU015194/1-488 LIRNKFGSAD NIPNLKDSLE EGQVDDGGKA LGVISNFQSS PKYGSEEDCS ENSBTAP00000008676/1-470 LIRNKFGSAD NIPNLKDSLE EGQVDEAGKA LGAISTFQSS PKYGSEEDCS bmy_00399T0/1-566 LIRNKFGSAD NIPNLKDSLE EGQVDDGGKA LGVISNFQSS PKYGSEEDCS ENSP00000376930/1-653 LIRNKFGSAD NIPNLKDSLE EGQVDDAGKA LGVISNFQSS PKYGSEEDCS ENSTTRP00000010698/1-651 LIRNKFGSAD NIPNL-DSLE EGQVDDAGKA LGVISNFQSS PKYGSEEDCS 451 500 BACU015194/1-488 SATSGSVGAN STAGGIAVGA SSSKTNTLDM QSSGFDALLH EIQEIRETQA ENSBTAP00000008676/1-470 SATSGSVGAN STAGGLAVGA SSSRTNTLDM QSSGFDALLH EVQEIRETQA bmy_00399T0/1-566 SATSGSVGAN STTGGIAVGA SSSKTNTLDM QSSGFDALLH EIQEIRETQA ENSP00000376930/1-653 SATSGSVGAN STTGGIAVGA SSSKTNTLDM QSSGFDALLH EIQEIRETQA ENSTTRP00000010698/1-651 SATSGS-GAN STTGGIAVGA SSSKTNTLDM QSSGFDALLH EIQEIRETQA 501 550 BACU015194/1-488 RLEESFETLK EHYQRDYSLI MQALQEERYR CERLEEQLND LTELHQNEIL ENSBTAP00000008676/1-470 RLEESFETLK EHYQRDYSLI MQALQEERYR CERLEEQLND LTELHQNEIL bmy_00399T0/1-566 RLEESFETLK EHYQRDYSLI MQALQEERYR L--------- -------EVL ENSP00000376930/1-653 RLEESFETLK EHYQRDYSLI MQTLQEERYR CERLEEQLND LTELHQNEIL ENSTTRP00000010698/1-651 RLEESFETLK EHYQRDYSLI MQALQEERYR CERLEEQLND LTELHQNEIL 551 600 BACU015194/1-488 NLKQELASME EKIAYQSYER ARDIQEALEA CQTRISKMEL QQQQQQVVQL ENSBTAP00000008676/1-470 NLKQELASME EKIAYQSYER ARDIQEALEA CQTRISKMEL QQQQQQVVQL bmy_00399T0/1-566 TMKAII---- ---------- ---LQEALEA CQTRISKMEL QQQQQQVVQL ENSP00000376930/1-653 NLKQELASME EKIAYQSYER ARDIQEALEA CQTRISKMEL QQQQQQVVQL ENSTTRP00000010698/1-651 NLKQELASME EKIAYQSYER ARDIQEALEA CQTRISKMEL QQQQQQVVQL 601 650 BACU015194/1-488 EGLENATARN LLGKLINILL AVMAVLLVFV STVANCVVPL MKTRNRTFST ENSBTAP00000008676/1-470 EGLENATARN LLGKLINILL AVMAVLLVFV STVANCVVPL MKTRSRTFST bmy_00399T0/1-566 EGLENATARN LLGKLINILL AVMAVLLVFV STVANCVVPL MKTRNRTFST ENSP00000376930/1-653 EGLENATARN LLGKLINILL AVMAVLLVFV STVANCVVPL MKTRNRTFST ENSTTRP00000010698/1-651 EGLENATARN LLGKLINILL AVMAVLLVFV STVANCVVPL MKTRNRTFST 651 700 BACU015194/1-488 LFLVVFIAFL WKHWDALFSY VERFFSSSR ENSBTAP00000008676/1-470 LLLVVFIAFL WKHWDALLGY VQRFFSSPR bmy_00399T0/1-566 LFLVVFIAFL WKHWDALFSY VDRFFSSSR ENSP00000376930/1-653 LFLVVFIAFL WKHWDALFSY VERFFSSPR ENSTTRP00000010698/1-651 LFLVVFIAFL WKHWDALFSY VERFFSSSR