KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:35:59 2014 Check: 00 .. Name: ENSP00000353769/1-1312 Len: 1317 Check: 555 Weight: 1.00 Name: ENSBTAP00000008680/1-1292 Len: 1317 Check: 653 Weight: 1.00 Name: ENSTTRP00000005216/1-1302 Len: 1317 Check: 5679 Weight: 1.00 Name: bmy_06372T0/1-848 Len: 1317 Check: 7904 Weight: 1.00 Name: BACU011072/1-864 Len: 1317 Check: 1773 Weight: 1.00 // 1 50 ENSP00000353769/1-1312 MEEEDESRGK TEESGEDRGD GPPDRDPTLS PSAFILRAIQ QAVGSSLQGD ENSBTAP00000008680/1-1292 MEEEDESRGK TEESGEDRGD GPPDRDPTLS PPAFILRAIQ QAVGSSLQGD ENSTTRP00000005216/1-1302 MEEEDESRGK TEESGEDRGD GPPDRDPTLS -SAFILRAIQ QAVGSSLQGD bmy_06372T0/1-848 MEEEDESRGK TEESGEDRGD GPPDRDPSLS PSAFILRAIQ QAVGSSLQGD BACU011072/1-864 MEEEDESRGK TEESGEDRGD GPPDRDPSLS PSAFILRAIQ QAVGSSLQGD 51 100 ENSP00000353769/1-1312 LPNDKDGSRC HGLRWRRCRS PRSEPRSQES GGTDTATVLD MATDSFLAGL ENSBTAP00000008680/1-1292 LPNDKDGSRC HGLRWRRCRS PRSEPRSQES GGTDTATVLD MAADGLLAGL ENSTTRP00000005216/1-1302 LPNDKDGSRC HGLRWRRCRS PRSEPRSQES GGTDTASVLD VAADGLLAGL bmy_06372T0/1-848 LPNDKDGSRC HGLRWRRCRS PRSEPRSQES GGTDTASVLD VAADGLLAGL BACU011072/1-864 LPNDKDGSRC HGLRWRRCRS PRSEPRSQES GGTDTASVLD VAADGLLAGL 101 150 ENSP00000353769/1-1312 VSVLDPPDTW VPSRLDLRPG ESEDMLELVA EVRIGDRDPI PLPVPSLLPR ENSBTAP00000008680/1-1292 VSILDPPDTW VPSHMDLRPG ESEDMLELVA EVRIGDRDPV PLPVPSLLPR ENSTTRP00000005216/1-1302 VSILDPPDTW VPSHLDLRPG ESEDMLELVA EVRIGDRDPV PLPVPSLLPR bmy_06372T0/1-848 VSILDPPDTW VPSHLDLRPG ESEDMLELVA EVRIGDRDPV PLPVPSLLPR BACU011072/1-864 VSILDPPDTW VPSHLDLRPG ESEDMLELVA EVRIGDRDPV PLPVPSLLPR 151 200 ENSP00000353769/1-1312 LRAWRTGKTV SPQSNSSRPT CARH-LTLGT GDGGPAPPPA PSSASSSPSP ENSBTAP00000008680/1-1292 LRAWRTGKTV SPQSHSSRPT CARHLLTLGT GDGGPAPPPA PSSASSSPSP ENSTTRP00000005216/1-1302 VRAWRTGKTX --XXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06372T0/1-848 VRAWRTGKTV ---------- ---------- ---------- ---------- BACU011072/1-864 VRAWRTGKTV ---------- ---------- ---------- ---------- 201 250 ENSP00000353769/1-1312 SPSSSSPSPP PPPPPPAPPA PPAPRFDIYD PFHPTDEAYS PPPAPEQKYD ENSBTAP00000008680/1-1292 SPSSSSPSPP PPPPPPAPPA PPAPRFDIYD PFHPTDEAYS PPPAPEQKYD ENSTTRP00000005216/1-1302 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06372T0/1-848 ---------- ---------- ---------- ---------- ---------- BACU011072/1-864 ---------- ---------- ---QVFDFCD GHLPEGES-- ---------- 251 300 ENSP00000353769/1-1312 PFEPTGSNPS SSAGTPSPEE EEEEEEEEEE EEEDEEEEEG LSQSISRISE ENSBTAP00000008680/1-1292 PFEPTGSNPS SSAGTPSPEE EEEEE----- ----EEEEEG LSQSISRISE ENSTTRP00000005216/1-1302 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06372T0/1-848 ---------- ---------- ---------- ---------- ---------- BACU011072/1-864 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000353769/1-1312 TLAGIYDDNS LSQDFPGDES PRPDAQPTQP TPAPGTPPQV DSTRADGAMR ENSBTAP00000008680/1-1292 TLAGIYDDNS LSQDFPGDES PGPDPQPLQP TPAPGTPPQA DSTRADGATR ENSTTRP00000005216/1-1302 XXXXXXXXXX SLSQFPGEES RDRNPQPA-P IPALATPPQA -STRADGATR bmy_06372T0/1-848 ---------- ---------- ---------- ---------- ---------- BACU011072/1-864 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000353769/1-1312 RRVFVVGTEA EACREGKVSV EVVTAGGAAL PPPLLPPGDS EIEEGEIVQP ENSBTAP00000008680/1-1292 RRVFVVGTEA EACREGKVSV EVVTAGGTAL PPPLLPPGDS EIEEGEIVQP ENSTTRP00000005216/1-1302 RRVFVVGTEA EACREGKVSV EVVTAGGAAL PPPLLPPGDS EIEEGEIVQP bmy_06372T0/1-848 ---------- ---------- ---------- ---------- ---------- BACU011072/1-864 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000353769/1-1312 EEEPRLALSL FRPGGRAARP TPAASATPTA QPLPQPPAPR APEGDDFLSL ENSBTAP00000008680/1-1292 EEEPRMAVSL FRAGGRAARP PPVAPS--AA QPPPPPPAPR APEGDDFLSL ENSTTRP00000005216/1-1302 EEKPRMALSL FRAGGRAARP PPAAPAPAAA QPPPPPPAPR APEGDDFLSL bmy_06372T0/1-848 ---------- ---------- ---------- ---------- ---------- BACU011072/1-864 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000353769/1-1312 HAESDGEGAL QVDLGEPAPA PPAADSRWGG LDLRRKILTQ RRERYRQRSP ENSBTAP00000008680/1-1292 HAESDGEGAL QVDLGEPAPA PPAADTRWGG LDLRRKILTQ RRERYRQRSP ENSTTRP00000005216/1-1302 HAESDGEGAL QVDLGEPAPA PPTADARWGG LDLRRKILTQ RRERYRQRSP bmy_06372T0/1-848 ---------- -------SPQ ---------- ---------- ---------- BACU011072/1-864 ---------- -------APQ ---------- ---------- ---------- 501 550 ENSP00000353769/1-1312 SPAPAPAPAA AAGPPTRKKS RRERKRS-GE AKEAASSSSG TQPAPPAPAS ENSBTAP00000008680/1-1292 SPAVAPAPAA PTGPPTRKKS RRERKRSGGE AKEAASSSSG AQPAPPAPAS ENSTTRP00000005216/1-1302 SPAAAPASAA PTGPPTRKKS RRERKRSGGE AKEAASSSSG AQPAPPAPAS bmy_06372T0/1-848 ---------- ---------- ---------- ---------- ---------- BACU011072/1-864 ---------- ---------- ---------- ---------- -------PRT 551 600 ENSP00000353769/1-1312 PWDSKKHRSR DRKPGSHASS SARRRSRSRS RSRSTRRRSR STDRRRGGSR ENSBTAP00000008680/1-1292 PWDSKKHRSR DRKPGSHASS STRR----RS RSRSTRHRSR STDRRRGGSR ENSTTRP00000005216/1-1302 PWDPKKHRSR DRKPGSHASS SARR----RS RSRSARRRSR STDRRRGGSR bmy_06372T0/1-848 ---------- ---------- ---------- ---------- ---------- BACU011072/1-864 QW-------- ---------- ---------- ---------- ---------- 601 650 ENSP00000353769/1-1312 RSRSREKRRR RRRSASPPPA TSSSSSSRRE RHRGKHRDGG GSKKKKKRSR ENSBTAP00000008680/1-1292 RSRSREKRRR RRRSNSPPPA TSSSSSSRRE RHRGKHRDGG GSKKKKKRSR ENSTTRP00000005216/1-1302 RSRSREKRRR RRRSNSPPPA TSSSSSSRRE RHRGKHRDGG GSKKKKKRSR bmy_06372T0/1-848 ---------- ---------- --------RE RHRGKHRDGG GSKKKKKRSR BACU011072/1-864 ---------- ---------- --------RE RHRGKHRDGG GSKKKKKRSR 651 700 ENSP00000353769/1-1312 SRGEKRSGDG SEKAPAPAPP PSGSTSCG-D RDSRRRGAVP PSIQDLTDHD ENSBTAP00000008680/1-1292 SRGEKRSGD- SEKGPPPAQP PSGSTSLGSD RDSRRRGAVP PSIQDLTDHD ENSTTRP00000005216/1-1302 SRGEKRSGD- SEKGLAPAQP PSGSTSLGGE RDSRRRGAVP PSIQDLTDHD bmy_06372T0/1-848 SRGEKRSGD- SEKGPAPAQP PSGSTSLGGE RDSRRRGAVP PSIQDLTDHD BACU011072/1-864 SRGEKRSGD- SEKGPAPAQP PSGSTSLGGE RDSRRRGAVP PSIQDLTDHD 701 750 ENSP00000353769/1-1312 LFAIKRTITV GRLDKSDPRG PSPAPASSPK REVLYDSEGL SGEERGGKSS ENSBTAP00000008680/1-1292 LFAIKRTITV GRPDKSDTRG PSPAPASSPK REVLYDSEGL SAEERGGKNS ENSTTRP00000005216/1-1302 LFAIKRTITV GRPDKPDPRG PSPAPASSPK REVLYDSEGL SAEERGGKSS bmy_06372T0/1-848 LFAIKRTITV GRLDKPDPRG PSPAPASSPK REVLYDSEGL SAEERGGKSS BACU011072/1-864 LFAIKRTITV GRLDKPDPRG PSPAPASSPK REVLYDSEGL SAEERGGKSS 751 800 ENSP00000353769/1-1312 QKDRRRSGAA SSSSSSREKG SRRKALDGGD RDRDRDRDRD RDRSSKKARP ENSBTAP00000008680/1-1292 EKDRRRSGAA SSSSSSREKG SRRKALDGGD RERDRD--RD RDRSSKKTRP ENSTTRP00000005216/1-1302 EKDRRRSGAA SSSSSSREKG SRRKALDGGD RDRDRDRDRD RDRSSKKARP bmy_06372T0/1-848 EKDRRRSGAA SSSSSSREKG SRRKALDGGD RDRDRDRERD RDRSSKKARP BACU011072/1-864 EKDRRRSGAA SSSSSSREKG SRRKALDGGD RDRDRDRERD RDRSSKKARP 801 850 ENSP00000353769/1-1312 PKESAPSSGP PPKPPVSSGS GSSSSSSSCS SRKVKLQSKV AVLIREGVSS ENSBTAP00000008680/1-1292 PKELAPSSGP PPKPPVSSGS GSSSSSSSSS SRKVKLQSKV AVLIREGVSS ENSTTRP00000005216/1-1302 PKELAPSSGP PPKPPVSSGS GSSSSSSSSS SRKVKLQSKV AVLIREGVSS bmy_06372T0/1-848 PKELAPSSGP PPKPPVSSGS GSSSSSSSSS SRKVKLQSKV AVLIREGVSS BACU011072/1-864 PKELAPSSGP PPKPPVSSGS GSSSSSSSSS SRKVKLQSKV AVLIREGVSS 851 900 ENSP00000353769/1-1312 TTPAKDAASA GLGSIGVKFS RDRESRSPFL KPDERAPTEM AKAAPGSTKP ENSBTAP00000008680/1-1292 TTPAREASSA GLGSIGVKFS RDRESRSPFL KPDERAPAEV AKAAQGSTKP ENSTTRP00000005216/1-1302 TTSAKEATSA GLGSIGVKFS RDRESRSPFL KPDERAPTEV AKAAQGSTKP bmy_06372T0/1-848 TTPAKEATSA GLGSIGVKFS RDRESRSPFL KPDERAPTEV AKAAQGSTKP BACU011072/1-864 TTPAKEATSA GLGSIGVKFS RDRESRSPFL KPDERAPTEV AKAAQGSTKP 901 950 ENSP00000353769/1-1312 KKTKVKAKAG AKKTKGTKGK TKPSKTRKKV RSGGGS-GGS GGQVSLKKSK ENSBTAP00000008680/1-1292 KKTKVKAKAG AKKTKGTKGK TKPSKTRKKI RS-----GGS SGPVTLKKSK ENSTTRP00000005216/1-1302 KKTKVKAKAG AKKAKGTKGK TKPSKTRKKI RSGGGSGGGG SGPATLKKSK bmy_06372T0/1-848 KKTKVKAKAG AKKAKGTKGK TKPSKTRKKI RSGGGSSGGS SGPVTLKKSK BACU011072/1-864 KKTKVKAKAG AKKAKGTKGK TKPSKTRKKI RSGGGSSGGS GGPVTLKKSK 951 1000 ENSP00000353769/1-1312 ADSCSQAAGT KGAEETSWSG EERAAKVPST PPPKAAPPPP ALTPDSQTVD ENSBTAP00000008680/1-1292 ADSCSQAAGA KGAEETSWSG EERAAKAPST PPPKVAPPPP ALTPDSQTVD ENSTTRP00000005216/1-1302 ADSCSQAAGA KGAEETSWSG EERAAKAPST PPPKAAPPPP ALTPDSQTVD bmy_06372T0/1-848 ADSCSQAAGA KGAEETSWSG EERAAKAPST PPPKAAPPPP ALTPDSQTVD BACU011072/1-864 ADSCSQAAGA KGAEETSWSG QERAS---NT PPPKAAPPPP ALTPDSQTVD 1001 1050 ENSP00000353769/1-1312 SSCKTPEVSF LPEEATEEAG VR-GGAEEEE EEEEEEEEEE EEEEQQPATT ENSBTAP00000008680/1-1292 SSCKTPEVSF LPEEAAEEAG VRVGAE--EE EEEEEEEEEE EEEEQQPATT ENSTTRP00000005216/1-1302 SSCKTPEVSF LPEEAAEEAG VR-GGA--EE EEEEEEEEEE EEEEQQPATS bmy_06372T0/1-848 SSCKTPEVSF LPEEATEEAG VR-GGA--EE EEEEEEEEEE EEEEQQPATT BACU011072/1-864 SSCKTPEVSF LPEEATEEAG VR-GGA---E EEEEEEEEEE EEEEQQPATT 1051 1100 ENSP00000353769/1-1312 TATSTAAAAP STAPSAGSTA GDSGAEDGPA SRVSQLPTLP PPMPWNLPAG ENSBTAP00000008680/1-1292 TATSTAAAAP SAAPSAGSTA GDSGAEDGPA PRGSQLPTLP PPMPWNLPAG ENSTTRP00000005216/1-1302 TATSTAAAAP STAPSAGSTA GDSGAEDGPA PRVSQLPTLP PPMP-NLPAG bmy_06372T0/1-848 TATSTAAAAP STAPSAGSTA GDSGAEDGPA PRVSQLPTLP PPMPWSLPAG BACU011072/1-864 TATSTAAAAP STAPSAGSTA GDSGAEDGPA PRVSQLPTLP PPMPWSLPAG 1101 1150 ENSP00000353769/1-1312 VDCTTSGVLA LTALLFKMEE ANLASRAKAQ ELIQATNQIL SHRKPPSSLG ENSBTAP00000008680/1-1292 VDCTTSGVLA LTALLFKMEE ANLASRAKAQ ELIQATNQIL SHRKPPSSLG ENSTTRP00000005216/1-1302 VDC-TSGVPA LTALLFKMEE ANLASRAKAQ ELIQATNQIL SHRKPPSSLG bmy_06372T0/1-848 VDCTTSGVLA LTALLFKMEE ANLASRAKAQ ELIQATNQIL SHRKPPSSLG BACU011072/1-864 VDCTTSGVLA LTALLFKMEE ANLASRAKAQ ELIQATNQIL SHRKPPSSLG 1151 1200 ENSP00000353769/1-1312 MTPAPVPTSL GLPPGPSSYL LPGSLPLGGC GSTPPTPTGL AATSDKREGS ENSBTAP00000008680/1-1292 VTPAPVPTSL GLPPGPSSYL LPGSLPLGGC GSTPPTPTGL AAASDKREGS ENSTTRP00000005216/1-1302 VTPAPVPTSL GLPPGPSSYL LPGSLPLGGC GSTPPTPTGL AAASDKREGS bmy_06372T0/1-848 VTPAPVPTSL GLPPGPSSYL LPGSLPLGGC GSTPPTPTGL AAASDKREGS BACU011072/1-864 VTPAPVPTSL GLPPGPSSYL LPGSLPLGGC GSTPPTPTGL AAASDKREGS 1201 1250 ENSP00000353769/1-1312 SSSEGRGDTD KYLKKLHTQE RAVEEVKLAI KPYYQKKDIT KEEYKDILRK ENSBTAP00000008680/1-1292 SSSEGRGDTD KYLKKLHTQE RAVEEVKLAI KPYYQKKDIT KEEYKDILRK ENSTTRP00000005216/1-1302 SSSEGRGDTD KYLKKLHTQE RAVEEVKLAI KPYYQKKDIT KEEYKDILRK bmy_06372T0/1-848 SSSEGRGDTD KYLKKLHTQE RAVEEVKLAI KPYYQKKDIT KEEYKDILRK BACU011072/1-864 SSSEGRGDTD KYLKKLHTQE RAVEEVKLAI KPYYQKKDIT KEEYKDILRK 1251 1300 ENSP00000353769/1-1312 AVHKICHSKS GEINPVKVSN LVRAYVQRYR YFRKHGRKPG DPPGPPRPPK ENSBTAP00000008680/1-1292 AVHKICHSKS GEINPVKVSN LVRAYVQRYR YFRKHGRKPG DPPGPPRPPK ENSTTRP00000005216/1-1302 AVHKICHSKS GEINPVKVSN LVRAYVQRYR YFRKHGRKPG DPPGPPRPPK bmy_06372T0/1-848 AVHKICHSKS GEINPVKVSN LVRAYVQRYR YFRKHGRKPG DPPGPPRPPK BACU011072/1-864 AVHKICHSKS GEINPVKVSN LVRAYVQRYR YFRKHGRKPG DPPGPPRPPK 1301 1350 ENSP00000353769/1-1312 EPGPPDKGGP GLPLPPL ENSBTAP00000008680/1-1292 EPGPPDKGGP GLPLPPL ENSTTRP00000005216/1-1302 EPGPPDKGGP GLPLPPL bmy_06372T0/1-848 EPGPPDKGGP GLPLPPL BACU011072/1-864 EPGPPDKGGP GLPLPPL