KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:00 2014 Check: 00 .. Name: bmy_13705T0/1-618 Len: 673 Check: 8260 Weight: 1.00 Name: BACU008596/1-623 Len: 673 Check: 940 Weight: 1.00 Name: ENSP00000372445/1-478 Len: 673 Check: 4729 Weight: 1.00 Name: ENSTTRP00000003986/1-479 Len: 673 Check: 4939 Weight: 1.00 Name: ENSBTAP00000008681/1-462 Len: 673 Check: 2725 Weight: 1.00 // 1 50 bmy_13705T0/1-618 MATARGPRYL LTLGRWRRGL GIAPQSRALA ALVPGVSQVD NKSDFLGKRX BACU008596/1-623 MATARGPGYL LTLGRWRRGL GIAPQSRALA ALVPGVSQVD NKSDFLGKRP ENSP00000372445/1-478 --MAAALKCL LTLGRWCPGL GVAPQARALA ALVPGVTQVD NKSGFLQKRP ENSTTRP00000003986/1-479 MASARGPAYL LTLGRWRRGL GIATQSRALA ALVPGVSQVD NKSDFLGKRS ENSBTAP00000008681/1-462 MATGRGSRYL LTIGRWRRSF GIAPQFRALA ALVPGVSHVD NKSDFLGKRP 51 100 bmy_13705T0/1-618 HRRHPGILQL SRVRLPQVLV DAAQLLLLES SMHNMEKQVQ ALTNYLWSRH BACU008596/1-623 HRRHPGILQL SRVRLPQVLV DAAQLLLLES SMPNMEKKVQ ALTNYLWSRH ENSP00000372445/1-478 HRQHPGILKL PHVRLPQALA NGAQLLLLGS AGPTMENQVQ TLTSYLWSRH ENSTTRP00000003986/1-479 HRRHPGILQL SHVRLPQVLV DAAQLLLLES SMPNMEKQVQ ALTNYLWSRH ENSBTAP00000008681/1-462 HRRHPGILQL SCVRLPQALA EAAQLLLLGS AMPNMEKQVQ ALTNYLWSRH 101 150 bmy_13705T0/1-618 LPVEPEELQR RAVHLEKKFL ENADSCQM-E KLCGEVLHAL RRTTYHWQEL BACU008596/1-623 LPVEPEELQR RAVHLEKKFL ENADSCQM-E KLCGEVLHAL RRTTYHWQEL ENSP00000372445/1-478 LPVEPEELQR RARHLEKKFL ENPDLSQTEE KLRGAVLHAL RKTTYHWQEL ENSTTRP00000003986/1-479 LPVEPEDLQR RAVHLEKKFL ENADSCQM-E KLCGEVLHAL RRTTYHWQEL ENSBTAP00000008681/1-462 LPVEPEELQR RAVLLEKKIL ENADSCQT-E KHHEEILHAL RRTTYHWQEL 151 200 bmy_13705T0/1-618 SYNEGLSLVY MAARLDGGFA AVSRAFHEVK FAQFPTIQAR LPEFQPQTLM BACU008596/1-623 SYNEGLSLVY MAARLDGGFA AVSRAFHE-- ------IQAR LPEFQPQTLM ENSP00000372445/1-478 SYTEGLSLVY MAARLDGGFA AVSRAFHE-- ------IRAR NPAFQPQTLM ENSTTRP00000003986/1-479 SYSEGLSLVY MAARLDGGFA AVSRAFHE-- ------IQAR LPEFQPQTLM ENSBTAP00000008681/1-462 SYSEGLSLVY MAARLDGGFA AVSRAFHE-- ------IQAR LPEFQPQTLM 201 250 bmy_13705T0/1-618 DFGTGTGSVT WAAHSTWGQS LREYMCVDSS AAMLELAEKL LKGEDKVVQD BACU008596/1-623 DFGTGTGSVI WAAHSTWGQS LREYMCVDSS AAMLELAEKL LKGEDK---- ENSP00000372445/1-478 DFGSGTGSVT WAAHSIWGQS LREYMCVDRS AAMLVLAEKL LKGGSES--- ENSTTRP00000003986/1-479 DFGSGTGSVT WAAHSTWGQS LREYMCVDSS AAMLELAEKL LKGGSGS--- ENSBTAP00000008681/1-462 DFGSGTGSVT WAAHSTWGQS LREYMCVDSS AAMLELAEKL LKGGSGS--- 251 300 bmy_13705T0/1-618 LGCLMCQVSF SDSFYLYHPR QVAMFKVCHV PCPVHQVQFD VVVSAFSLSE BACU008596/1-623 ---------- ---------- ---------- ------VQFD VVVSAFSLSE ENSP00000372445/1-478 -GEPYIPGVF FRQFLPVSPK ---------- ------VQFD VVVSAFSLSE ENSTTRP00000003986/1-479 -GMPYVPGVF FRQFLPVSPK ---------- ------VQFD VVVSAFSLSE ENSBTAP00000008681/1-462 -GMPCVPGVF FRQFLPVSPK ---------- ------VQFD VVVAAFSLSE 301 350 bmy_13705T0/1-618 LPSKANRTDI VQTLWRKTGH FLVLVENGTK AGHSLLMDAR DLVLNGKEKS BACU008596/1-623 LPSKANRTDV VQTLWRKTGH FLVLVENGTK AGHSLLMDAR DLVLNRKEKS ENSP00000372445/1-478 LPSKADRTEV VQTLWRKTGH FLVLVENGTK AGHSLLMDAR DLVLKGKEKS ENSTTRP00000003986/1-479 LPSKANRTDV VQTLWRKTGH FLILVENGTK AGHSLLMDAR DLVLNGKEKS ENSBTAP00000008681/1-462 LPSKADRTDV VQTLWRKTGH FLVLIENGTK AGHSLLMDAR DLVLNGKEKS 351 400 bmy_13705T0/1-618 PLDPRPGFVF APCPHELPCP QLTASKPLAC SFSQAYHPIP FSW------- BACU008596/1-623 PLDPRPGFVF APCPHELPCP QLTASKPLAC SFSQAYHAIP FSWLDCNSCF ENSP00000372445/1-478 PLDPRPGFVF APCPHELPCP QLTN---LAC SFSQAYHPIP FSW------- ENSTTRP00000003986/1-479 PLDPRPGFVF APCPHELPCP QLTASKPLAC SFSQAYHPIP FSW------- ENSBTAP00000008681/1-462 PLDPRPGFVF APCPHELPCP QLTASKPLAC SFSQAYYPIP FSW------- 401 450 bmy_13705T0/1-618 ---------- ---------- ---------- ---------- ------NSTN BACU008596/1-623 LLGRHRRVLS LLSCTSAGIF LGAGFMHMTA EALEGIESEI QKLVIQNSTN ENSP00000372445/1-478 ---------- ---------- ---------- ---------- ------NKKP ENSTTRP00000003986/1-479 ---------- ---------- ---------- ---------- ------NKKP ENSBTAP00000008681/1-462 ---------- ---------- ---------- ---------- ------NKKP 451 500 bmy_13705T0/1-618 SEGNSDDADS AYMEYPYGEL IISLGFFFVF LLESLALQCC PGAAGRSKVQ BACU008596/1-623 SEGNSDDADS AYMEYPYGEL IISLGFFFVF LLESLALQCC PGAAGRSKVQ ENSP00000372445/1-478 KEEK------ ------FSMV ILARG----- ---------S PEEAHR---- ENSTTRP00000003986/1-479 KEEK------ ------FSMV ILARG----- ---------S PEEANR---- ENSBTAP00000008681/1-462 KEEK------ ------FSLV ILARG----- ---------S PEKANR---- 501 550 bmy_13705T0/1-618 EQEWGMANVL EPHSHGPLPS PSRGPLRALV LLLSLSFHSV FEGLAVGLQP BACU008596/1-623 EQEWGMANVL EPHSHGPLPS PSRGPLRALV LLLSLSFHSV FEGLAVGLQP ENSP00000372445/1-478 ---W------ -PRITQPVLK RPR------- ---------- ---------- ENSTTRP00000003986/1-479 ---W------ -PRITQPVLK RPR------- ---------- ---------- ENSBTAP00000008681/1-462 ---W------ -PRITQPVLK RPR------- ---------- ---------- 551 600 bmy_13705T0/1-618 TVAATVQLCL AILAHKGLVV FGVGLRLVQV GTGSRWAMLS ILALALMSPV BACU008596/1-623 TVAATVQLCL AILAHKGLVV FGVGLRLVQV GTGSRWAMLS ILSLALMSPV ENSP00000372445/1-478 --HVHCHLC- ---CPDGHM- ---------- ----QHAVLT ---------- ENSTTRP00000003986/1-479 --HVHCHLC- ---CPDGHM- ---------- ----QHAVIT ---------- ENSBTAP00000008681/1-462 --HVHCHLC- ---CPDGHM- ---------- ----QHAVIT ---------- 601 650 bmy_13705T0/1-618 GLALGLAVPQ GVSEGGQGLA QAVLEGMAAG TFLY-VTFLE ILPRELAGPE BACU008596/1-623 GLALGLAVPQ GISEGGQGLA QAVLEGMAAG TFLY-VTFLE ILPQELAGPE ENSP00000372445/1-478 ------ARRH GRYGGCDQNQ WDVAGSCSPR QHLFPQGFVS LCPCQLLGRS ENSTTRP00000003986/1-479 ------ARRH GRYRGCDQN- WKVARTCSPH YPLF-LGFVS LCPCQLLGRS ENSBTAP00000008681/1-462 ------ARRH GR------DL YRCARVSSWG DLLPVIT--- --PLELP-PS 651 700 bmy_13705T0/1-618 APLAKWGCVA AGFAFMAFIA LWA BACU008596/1-623 APLAKWGCVA AGFAFMAFIA LWA ENSP00000372445/1-478 FTCAYSVCVS SIYGSGSL-- --- ENSTTRP00000003986/1-479 FTCDHAIASS ITCSRSP--- --- ENSBTAP00000008681/1-462 AQDAQDAPES ---------- ---