KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:36:02 2014 Check: 00 .. Name: bmy_08699T0/1-347 Len: 622 Check: 8871 Weight: 1.00 Name: ENSP00000431840/1-622 Len: 622 Check: 4229 Weight: 1.00 Name: ENSTTRP00000001436/1-547 Len: 622 Check: 629 Weight: 1.00 Name: ENSBTAP00000008703/1-605 Len: 622 Check: 6056 Weight: 1.00 // 1 50 bmy_08699T0/1-347 ---------- ---------- ---------- ---------- ---------- ENSP00000431840/1-622 MALRGTLRPL KVRRRREMLP QQVGFVCAVL ALVCCASGLF GSLGHKTASA ENSTTRP00000001436/1-547 ---------- -------MLW QQVGFVCAIL ALVCCASGLF GSWGHKTASA ENSBTAP00000008703/1-605 ---------- -------MLP QQVGFVCAIL ALVCCASGLF GSWGHRTASV 51 100 bmy_08699T0/1-347 ---------- ---------- ---------- ---------- ---------- ENSP00000431840/1-622 SKRVLPDTWR NRKLMAPVNG TQTAKNCTDP AIHEFPTDLF SNKERQHGAV ENSTTRP00000001436/1-547 SKHVLPDTWR SRRLMAPVNG TQTAKNCTDP AIHEFPADLF SNKERQHGAV ENSBTAP00000008703/1-605 SKYVLPDTWR NRRLMAPVNG TEAAKNCTDP AIHEFPTDLF SNNERQHGAV 101 150 bmy_08699T0/1-347 ---------M FYALAIVCDD FFVPSLEKIC EKLHLSEDVA GATFMAAGSS ENSP00000431840/1-622 LLHILGALYM FYALAIVCDD FFVPSLEKIC ERLHLSEDVA GATFMAAGSS ENSTTRP00000001436/1-547 LLHILGALYM FYALAIVCDD FFVPSLEKIC EKLHLSEDVA GATFMAAGSS ENSBTAP00000008703/1-605 LLHILGALYM FYALAIVCDD FFVPSLEKIC EKLHLSEDVA GATFMAAGSS 151 200 bmy_08699T0/1-347 TPELFASVIG VFITHGDVGV GTIVGSAVFN VLCIIGVCGL SAGQVIRLTW ENSP00000431840/1-622 TPELFASVIG VFITHGDVGV GTIVGSAVFN ILCIIGVCGL FAGQVVRLTW ENSTTRP00000001436/1-547 TPELFASVIG VFITHGDVGV GTIVGSAVFN ILCIIGVCGL SAGQVIRLTW ENSBTAP00000008703/1-605 TPELFASVIG VFITHGDVGV GTIVGSAVFN ILCIIGVCGL FAGQVVRLTW 201 250 bmy_08699T0/1-347 WAVCRDSVYY TLSVVVLIAF IYDEEIVWWE GLVLIILYVF YILIMKYNVK ENSP00000431840/1-622 WAVCRDSVYY TISVIVLIVF IYDEQIVWWE GLVLIILYVF YILIMKYNVK ENSTTRP00000001436/1-547 WAVCRDSVYY TLSVVVLIAF IYDEEIVWWE GLVLIVLYVF YILIMKYNVK ENSBTAP00000008703/1-605 WAVCRDSVYY TLSVIVLIAF IYDEEIMWWE GLVLIVLYVF YILIMKYNVK 251 300 bmy_08699T0/1-347 IQAFFTVKQK TIANGNTVNS ELEDGNDYCD SSSDDPSMPL LGPVKEEPQY ENSP00000431840/1-622 MQAFFTVKQK SIANGNPVNS ELEAGNDFYD GSYDDPSVPL LGQVKEKPQY ENSTTRP00000001436/1-547 M-AFFTVKQ- TIANGNTVSS ELEDGNDYCG SSSDDL-MPL L-QVKEELQY ENSBTAP00000008703/1-605 MQAFFTIKQK AIANGNTVNS ELEDGNDYCD SSSDDPSLPL LGQVKEEPQY 301 350 bmy_08699T0/1-347 SRNPVVMVDE VMSSSPPKFT FPEAGLRIMI TNKFGPRTRL RMASRIIINE ENSP00000431840/1-622 GKNPVVMVDE IMSSSPPKFT FPEAGLRIMI TNKFGPRTRL RMASRIIINE ENSTTRP00000001436/1-547 SKNPVVMVDE VMSSSPPKFT FPEAGLRVMI TNKFGPRTRL RMASRIIINE ENSBTAP00000008703/1-605 NKNPVVMVDE VMSSSPPKFT FPEAGLRVMI TNKFGPRTRL RMASRIIINE 351 400 bmy_08699T0/1-347 RQRLINSANG VSSKPLQNGR HESIENGNIP VESPAEPQRE QEQP----PP ENSP00000431840/1-622 RQRLINSANG VSSKPLQNGR HENIENGNVP VENPEDPQQN QEQQPPPQPP ENSTTRP00000001436/1-547 RQRLISSANG VSSKPLQNGR HESIENGNVP VENPAELQQE REQP----PP ENSBTAP00000008703/1-605 RQRLINSANG VSSKPLQNGR HESIENGNVP VENLEEPQRD QEPPPQPLPP 401 450 bmy_08699T0/1-347 APEPELVEAA FLSPFSMP-- ---------- ---------- ---------- ENSP00000431840/1-622 PPEPEPVEAD FLSPFSVPEA RGDKVKWVFT WPLIFLLCVT IPNCSKPRWE ENSTTRP00000001436/1-547 PPEPELVEAA FLSPFSMPEA RGDKAKWVLT WPLIFLLCVT IPNCSKPRWE ENSBTAP00000008703/1-605 PQEPEPVEAA FLSPFSMPEA RGDKVKWVFT WPLIFLLCIT IPNCSKPRWE 451 500 bmy_08699T0/1-347 ---------G EFWGSGAPGL HCW------- ---------G LRGSEPGSS- ENSP00000431840/1-622 KFFMVTFITA TLWIAVFSYI MVWLVTIIGY TLGIPDVIMG ITFLAAGTSV ENSTTRP00000001436/1-547 KFFMLTFALA TLWIAVFSYL MVWLVTIIGY TLGIPDVIMG ITFLAAGTSV ENSBTAP00000008703/1-605 KFFMLTFVIA TLWIAVFSYL MVWLVTIIGY TLGIPDVIMG ITFLAAGTSV 501 550 bmy_08699T0/1-347 ---------- ---------- ---------- --------GW RAGPMRAGEA ENSP00000431840/1-622 PDCMASLIVA RQGLGDMAVS NTIGSNVFDI LVGLGVPWGL QTMVVNYGST ENSTTRP00000001436/1-547 PDCMASLIVT RQGLGDMAVS NTIGSNVFDI LVGLGVPWGL QTMVINYGST ENSBTAP00000008703/1-605 PDCMASLIVA RQGLGDMAVS NTIGSNVFDI LVGLGIPWGL QTMVVNYGST 551 600 bmy_08699T0/1-347 GGKGRR---- ---------- ---------- ---------- ---------- ENSP00000431840/1-622 VKINSRGLVY SVVLLLGSVA LTVLGIHLNK WRLDRKLGVY VLVLYAIFLC ENSTTRP00000001436/1-547 VKINSRGLVY SVVLLLGSVA LT-------- ---------- ---------- ENSBTAP00000008703/1-605 VKINSRGLVY SVALLLGSVA LTVLGIHLNK WKLDRKLGVY VLVLYAVFLC 601 650 bmy_08699T0/1-347 ---------- ---------- -- ENSP00000431840/1-622 FSIMIEFNVF TFVNLPMCRE DD ENSTTRP00000001436/1-547 ---------- ---------- -- ENSBTAP00000008703/1-605 FSIMIEFNVF TFVNLPMCRE DD