KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:04 2014 Check: 00 .. Name: ENSTTRP00000004078/1-1030 Len: 1031 Check: 865 Weight: 1.00 Name: ENSP00000402152/1-1030 Len: 1031 Check: 4539 Weight: 1.00 Name: ENSBTAP00000008705/1-1030 Len: 1031 Check: 5086 Weight: 1.00 Name: bmy_12184T0/1-643 Len: 1031 Check: 9989 Weight: 1.00 Name: BACU001845/1-1026 Len: 1031 Check: 5023 Weight: 1.00 // 1 50 ENSTTRP00000004078/1-1030 MAELPVSEMP RDHALCSGRF TISTLLGGDE PPPPAAYESS HPSHLTHGST ENSP00000402152/1-1030 MAELPTTETP GDATLCSGRF TISTLLSSDE PSPPAAYDSS HPSHLTHSST ENSBTAP00000008705/1-1030 MAELPVSEAP RDPALCSGRF TISTLLGGEE PPPPAAYDSS HPSHLTHGNT bmy_12184T0/1-643 MAELPVLETP RDPALCSGRF TISTLLGGDE PPPPAAYDSS HPSHLTHGST BACU001845/1-1026 MAELPVLETP RDPALCSGRF TISTLLGGDE PPPPAAYDSS HPSHLTHGST 51 100 ENSTTRP00000004078/1-1030 FYMRTFGYNT IDVVPAYEHY ANSTLPGEPR KARPTLADLH SFLKQEGSHL ENSP00000402152/1-1030 FCMRTFGYNT IDVVPTYEHY ANSTQPGEPR KVRPTLADLH SFLKQEGRHL ENSBTAP00000008705/1-1030 FYNRTFGYNT IDVVPAYEHY ANSALPGEPR KVRPTLADLH SFLK-EGSHL bmy_12184T0/1-643 FYMRTFGYNT VDVVPAYEHY ANSTLPGEPR KVRPTLADLH SFLK-EGSHL BACU001845/1-1026 FYMRTFGYNT VDVVPAYEHY ANSTLPGEPR KVRPTLADLH SFLKQEGSHL 101 150 ENSTTRP00000004078/1-1030 HALAFDSRPS HEMTDGLVED EAGTNGEKNP EEPVRFGW-V KGVMIRCMLN ENSP00000402152/1-1030 HALAFDSRPS HEMTDGLVEG EAGTSSEKNP EEPVRFGW-V KGVMIRCMLN ENSBTAP00000008705/1-1030 HALAFDSRPS HEMTDGLVED EAGINGEKNP EEPVRFGWNQ RGTEIRCMLN bmy_12184T0/1-643 HALAFDSRPS HEMTDGLVED EAGTNGEKNP EEPVRFGW-V KGVMIRCMLN BACU001845/1-1026 HALAFDSRPS REMTDGLVED ETGTNGEKNP EEPVRFGW-V KGVMIRCMLN 151 200 ENSTTRP00000004078/1-1030 IWGVILYLRL PWITAQAGIV LTWIIILLSV TVTSITGLSI SAISTNGKVK ENSP00000402152/1-1030 IWGVILYLRL PWITAQAGIV LTWIIILLSV TVTSITGLSI SAISTNGKVK ENSBTAP00000008705/1-1030 IWGVILYLRL PWITAQAGIV LTWIIILLSV TVTSITGLSI SAISTNGKVK bmy_12184T0/1-643 IWGVILYLRL PWITAQAGIV LTWIIILLSV TVTSITGLSI SAISTNGKVK BACU001845/1-1026 IWGVILYLRL PWITAQAGIV LTWIIILLSV TVTSITGLSI SAISTNGKVK 201 250 ENSTTRP00000004078/1-1030 SGGTYFLISR SLGPELGGSI GLIFAFANAV GVAMHTVGFA ETVQDLLQEY ENSP00000402152/1-1030 SGGTYFLISR SLGPELGGSI GLIFAFANAV GVAMHTVGFA ETVRDLLQEY ENSBTAP00000008705/1-1030 SGGTYFLISR SLGPELGGSI GLIFAFANAV GVAMHTVGFA ETVRDLLQEY bmy_12184T0/1-643 SGGTYFLISR SLGPELGGSI GLIFAFANAV GVAMHTVGFA ETVQDLLQEY BACU001845/1-1026 SGGTYFLISR SLGPELGGSI GLIFAFANAV GVAMHTVGFA ETVQDLLQEY 251 300 ENSTTRP00000004078/1-1030 GSPIVDPTND IRIVGVVTVT VLLAISLAGM EWESKAQVLF FLVIMVSFAN ENSP00000402152/1-1030 GAPIVDPIND IRIIAVVSVT VLLAISLAGM EWESKAQVLF FLVIMVSFAN ENSBTAP00000008705/1-1030 GSPIVDPTND IRIIGVVTVT VLLAISLAGM EWESKAQVLF FLVIMVSFAN bmy_12184T0/1-643 GSPIVDPTND IRIIGVVTVT VLLAISLAGM EWESKAQVLF FLVIMVSFAN BACU001845/1-1026 GSPIVDPTND IRIIGVVTVT VLLAISLAGM EWESKAQVLF FLVIMVSFGN 301 350 ENSTTRP00000004078/1-1030 YLVGTLIPPS EDKASKGFFS YRADIFAQNL VPDWRGVDGS FFGMFSIFFP ENSP00000402152/1-1030 YLVGTLIPPS EDKASKGFFS YRADIFVQNL VPDWRGPDGT FFGMFSIFFP ENSBTAP00000008705/1-1030 YLVGTLIPPS EEKASKGFFS YRADIFVQNL VPEWRGMDGS FFGMFSIFFP bmy_12184T0/1-643 YLVGTLIPPS EDKASKGFFS YRADIFAQNL VPDWRGVDGS FFAMFSIFFP BACU001845/1-1026 YLVGTLIPPS EDKASKGFFS YRADIFAQNL VPDWRGVDGS FFGMFSIFFP 351 400 ENSTTRP00000004078/1-1030 SATGILAGAN ISGDLKDPAV AIPKGTLMAI FWTTISYLAI SATIXXXXXX ENSP00000402152/1-1030 SATGILAGAN ISGDLKDPAI AIPKGTLMAI FWTTISYLAI SATIGSCVVR ENSBTAP00000008705/1-1030 SATGILAGAN ISGDLKDPAV AIPKGTLMAI FWTTVSYLAI SATIGSCVVR bmy_12184T0/1-643 SATGILAGAN ISGDLKDPAV AIPKGTLMAI FWTTISYLAI SATIGSCVVR BACU001845/1-1026 SATGILAGAN ISGDLKDPAV AIPKGTLMAI FWTTISYLAI SATIGSCVVR 401 450 ENSTTRP00000004078/1-1030 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXTMSM ENSP00000402152/1-1030 DASGVLNDTV TPGWGACEGL ACSYGWNFTE CTQQHSCHYG LINYYQTMSM ENSBTAP00000008705/1-1030 DASGGLNDTV TPGSGACEGL ACGYGWNFTE CAQQRSCRYG LINYYQTMSM bmy_12184T0/1-643 DASGILNDTV TPGSGACEGL ACGYGWNFTE CAQQHSCRYG LINHYQTMSM BACU001845/1-1026 DASGILNDTV TPGSGACEGL ACGYGWNFTE CAQQHSCRYG LINHYQTMSM 451 500 ENSTTRP00000004078/1-1030 VSGFAPLITA GIFGATLSSA LACLVSAAKV FQCLCRDQLY PLIGFFGKGY ENSP00000402152/1-1030 VSGFAPLITA GIFGATLSSA LACLVSAAKV FQCLCEDQLY PLIGFFGKGY ENSBTAP00000008705/1-1030 VSGFAPLITA GIFGATLSSA LACLVSAAKV FQCLCLDQLY PLIGFFGKGY bmy_12184T0/1-643 VSGFAPLITA GIFGATLSSA LACLVSAAKV FQCLCVDQLY PLIGFFGKGY BACU001845/1-1026 VSGFAPLITA GIFGATLSSA LACLVSAAKV FQCLCVDQLY PLIGFFGKGY 501 550 ENSTTRP00000004078/1-1030 GKNNEPVRGY LLAYAIAVAF IIIAELNTIA PIISNFFLCS YALINFSCFH ENSP00000402152/1-1030 GKNKEPVRGY LLAYAIAVAF IIIAELNTIA PIISNFFLCS YALINFSCFH ENSBTAP00000008705/1-1030 GKNNEPVRGY LLAYAIAVAF IIIAELNTIA PIISNFFLCS YALINFSCFH bmy_12184T0/1-643 GKNNEPLRSY LLAYAIAVAF IIIAELNTIA PIISNFFLCS YALINFSCFH BACU001845/1-1026 GKNNEPLRSY LLAYAIAVAF IIIAELNTIA PIISNFFLCS YALINFSCFH 551 600 ENSTTRP00000004078/1-1030 ASITNSPGWR PSFRYYSKWA ALFGAIISVV IMFLLTWWAA LIAIGVVLFL ENSP00000402152/1-1030 ASITNSPGWR PSFQYYNKWA ALFGAIISVV IMFLLTWWAA LIAIGVVLFL ENSBTAP00000008705/1-1030 ASITNSPGWR PSFRYYSKWA ALFGAIISVV IMFLLTWWAA LIAIGVVLFL bmy_12184T0/1-643 ASITNSPGWR PSFRYYSKWA ALFGAIISVV IMFLLTWWAA LIAIGVVLFL BACU001845/1-1026 ASITNSPGWR PSFRYYSKWA ALFGAIISVV IMFLLTWWAA LIAIGVVLFL 601 650 ENSTTRP00000004078/1-1030 LLYVIYKKPE VNWGSSVQAG SYNLALSYSV GLNEVEDHIK NYRPQCLVLT ENSP00000402152/1-1030 LLYVIYKKPE VNWGSSVQAG SYNLALSYSV GLNEVEDHIK NYRPQCLVLT ENSBTAP00000008705/1-1030 LLYVIYKKPE VNWGSSVQAG SYNLALSYSV GLNEVEDHIK NYRPQCLVLT bmy_12184T0/1-643 LLYVIYKKP- ---------- ---------- ---------- ---------- BACU001845/1-1026 LLYVIYKKPE VNWGSSVQAG SYNLALSYSV GLSEVEDHIK NYRPQCLVLT 651 700 ENSTTRP00000004078/1-1030 GPPNFRPALV DFVGTFTRNL SLMICGHVLI GPRKQRMPEL RLIANGHTKW ENSP00000402152/1-1030 GPPNFRPALV DFVGTFTRNL SLMICGHVLI GPHKQRMPEL QLIANGHTKW ENSBTAP00000008705/1-1030 GPPNFRPALV DFVGTFTRNL SLMICGHVLM GPRKQRMPEL RLIANGHTKW bmy_12184T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU001845/1-1026 GPPNFRPALV DFVGTFTRNL SLMICGHVLI GPRKQRMPEL RLIASGHTKW 701 750 ENSTTRP00000004078/1-1030 LNKRKIKAFY SDVIAEDLRS GVQILMQAAG LGRMKPNILV VGFKKNWQSA ENSP00000402152/1-1030 LNKRKIKAFY SDVIAEDLRR GVQILMQAAG LGRMKPNILV VGFKKNWQSA ENSBTAP00000008705/1-1030 LNKRKIKAFY SDVLAEDLRS GVQVLMQAAG LGRMKPNILV IGFKKNWQSA bmy_12184T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU001845/1-1026 LNKRKIKAFY SDVIAEDLRS GVQILMQAAG LGRLKPNILV VGFKKNWQSA 751 800 ENSTTRP00000004078/1-1030 HPATVEDYIG ILHDAFDFNY SVCVMRMREG LNISKVMQAH INPVFDPAED ENSP00000402152/1-1030 HPATVEDYIG ILHDAFDFNY GVCVMRMREG LNVSKMMQAH INPVFDPAED ENSBTAP00000008705/1-1030 HPATVEDYIG ILHDAFDLNY GVCVMRMREG LNISEVMQAH INPMFDPAED bmy_12184T0/1-643 ---------A ILH------- ---------- ---------- ---------- BACU001845/1-1026 HPATVEDYIG ILHDAFDFNY SVCVMRMREG LNISKVMQAH INPVFDPVED 801 850 ENSTTRP00000004078/1-1030 GKEARASGAR LSVSGTVDPE GLVQEEQAST IFQSEQGKKT IDIYWLFDDG ENSP00000402152/1-1030 GKEASARGAR PSVSGALDPK ALVKEEQATT IFQSEQGKKT IDIYWLFDDG ENSBTAP00000008705/1-1030 SKEARAGGAH LSVSGTVDPE ALVQEEQAST VFQSEQGKKT IDIYWLFDDG bmy_12184T0/1-643 ---VRTLGT- ---------- ---------- ---------- ---------- BACU001845/1-1026 GKEARASGAR PSVSGTVDPE ALVQEEQAST IFQSEQGKKT IDIYWLFDDG 851 900 ENSTTRP00000004078/1-1030 GLTLLIPYLL GRKKRWNKCR TRVFVGGQIN RLDQERKAII SLLSKFRLGF ENSP00000402152/1-1030 GLTLLIPYLL GRKRRWSKCK IRVFVGGQIN RMDQERKAII SLLSKFRLGF ENSBTAP00000008705/1-1030 GLTLLIPYLL GRKKRWSKCR IRVFVGGQIN RMDQERKAII SLLSKFRLGF bmy_12184T0/1-643 ---------- ---------- ---------- ---------- --------DL BACU001845/1-1026 GLTLLIPYLL GRKKRWNKCR TRVFVGGQIN RLDQERKAII SLLSKFRLGF 901 950 ENSTTRP00000004078/1-1030 HEVHILPDIN QKPQAEHTKR FEDMIAPFRL NDGFKDEATV TEMRRDCPWK ENSP00000402152/1-1030 HEVHILPDIN QNPRAEHTKR FEDMIAPFRL NDGFKDEATV NEMRRDCPWK ENSBTAP00000008705/1-1030 HEVHVLPDIN QKPRAEHIKR FEDMIAPFRL NDGFKDEATV TEMRRDCPWK bmy_12184T0/1-643 QAVYLLPRCS VPEEGQH--- ---------- ---------- ---------- BACU001845/1-1026 HEVHILPDIN QKPRAEHTKR FEDMIAPFRL NDGFKDEATV TEMRRDCPWK 951 1000 ENSTTRP00000004078/1-1030 ISDEEINKNR IKSLRQVRLN EILLDYSRDA ALVIITLPIG RKGKCPSSLY ENSP00000402152/1-1030 ISDEEITKNR VKSLRQVRLN EIVLDYSRDA ALIVITLPIG RKGKCPSSLY ENSBTAP00000008705/1-1030 ISDEEINKNR IKSLRQVRLN EILLDYSRDA ALVVITLPIG RKGKCPSSLY bmy_12184T0/1-643 ---------- ---------- ---------- ---------- --------MY BACU001845/1-1026 ISDEEINKNR IK----VRLN EILLDYSRDA ALVIITLPIG RKGKCPSSLY 1001 1050 ENSTTRP00000004078/1-1030 MAWLETLSQD LRPPVVLIRG NQENVLTFYC Q ENSP00000402152/1-1030 MAWLETLSQD LRPPVILIRG NQENVLTFYC Q ENSBTAP00000008705/1-1030 MAWLETLSQD LRPPVILIRG NQENVLTFYC Q bmy_12184T0/1-643 VWFLS----- ---------- ---------- - BACU001845/1-1026 MAWLETLSQD LRPPVVLIRG NQENVLTFYC Q