KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:05 2014 Check: 00 .. Name: BACU007948/1-241 Len: 349 Check: 6277 Weight: 1.00 Name: ENSP00000331470/1-339 Len: 349 Check: 3390 Weight: 1.00 Name: ENSBTAP00000008720/1-340 Len: 349 Check: 3028 Weight: 1.00 Name: bmy_19556T0/1-179 Len: 349 Check: 1396 Weight: 1.00 Name: ENSTTRP00000003357/1-338 Len: 349 Check: 8310 Weight: 1.00 // 1 50 BACU007948/1-241 MLPSAVAAHA GAYWDVVASS ALLNFPAAPG FGNLGKSFLI ENLLRAGSAP ENSP00000331470/1-339 MLPSAVAAHA GAYWDVVASS ALLNLPAAPG FGNLGKSFLI ENLLRVGGAP ENSBTAP00000008720/1-340 MLPSAVAAHA GAYWDVVASS SLLNFPAAPG FGNLGKSFLI ENLLRAGGAP bmy_19556T0/1-179 ---------- ---------- -----MEKRG VG-------- ---------- ENSTTRP00000003357/1-338 MLPSAVAAHA GAYWDVVASS ALLNFPAAPG FGNLGKSFLI ENLLRAGGAP 51 100 BACU007948/1-241 PHRLPPPPPH GPAAALA-SG AQVRPLPASP VPLKLCPAAE PVSPSGAPYG ENSP00000331470/1-339 TPRLQPPAPH DPATALATAG AQLRPLPASP VPLKLCPAAE QVSPAGAPYG ENSBTAP00000008720/1-340 PLGLPPPQHH GSAAALG-AG AQVRSLPASP VPLKLCPAAE PVSPGGAPYG bmy_19556T0/1-179 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003357/1-338 PHRLPPPPPH GPAAALA-AG AQVRPLXXXX XXXXXXXXXX XXXXXXXXXX 101 150 BACU007948/1-241 TRWAFQVLSP SADGARLPGR APGDRDCAFQ PSTP------ ---------- ENSP00000331470/1-339 TRWAFQVLSP SADSARLPGR APGDRDCTFQ PSAPAPSKPF LLSTPPFYSA ENSBTAP00000008720/1-340 TRWAFQVLSP SADGARLPGR APGDPDCAFQ PPAPAPSKPF FLSAPPFYSA bmy_19556T0/1-179 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003357/1-338 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXPSKPF FLSAPPFYSS 151 200 BACU007948/1-241 ---------- ---------- ---------- -----GL--- --FEE----- ENSP00000331470/1-339 CCGGSCRRPA SSTAFPREES MLPLLTQDSN SKARRGILRR AVFSEDQRKA ENSBTAP00000008720/1-340 CCGGSCRRPA SPTAFAREES VLPLLTQEST SKVRRGILRR AVFSEDQRKA bmy_19556T0/1-179 ---------- -------EES VLPLLTQESN SKARRGILRR AVFSEDQRKA ENSTTRP00000003357/1-338 CCGGSCRRPA SPTAFPREES VLPLLTQESN SKARRGILRR AVFSEDQRKA 201 250 BACU007948/1-241 ---------- -------TLE APLGFRR--- ---------- -KGSPGPEIS ENSP00000331470/1-339 LEKMFQKQKY ISKTDRKKLA INLGLKESQV KIWFQNRRMK WRNSKEKEVL ENSBTAP00000008720/1-340 LEKMFQKQKY ISKTDRKKLA INLGLKESQV KIWFQNRRMK WRNSKEKEVL bmy_19556T0/1-179 LEKMFQKQKY ISKTDRKKLA VNLGLKESQV KIWFQNRRMK WRNSKEKEVL ENSTTRP00000003357/1-338 LEKMFQKQKY ISKTDRKKLA VTLGLKESQV KIWFQNRRMK WRNSKEKEVL 251 300 BACU007948/1-241 G--------- FAGPVSR--- GFPSSASPPA RSCPGGRATP VLWKVLGSES ENSP00000331470/1-339 SNRCIQEVGL QEDPLSRSAL GFPSPC-PSI WDVPQQHSSP R-WRENSPEP ENSBTAP00000008720/1-340 SNRCLQEVVL QEDPLSRSAL GFPSPC-ASL WEVSQQHPSP G-WRENSPEP bmy_19556T0/1-179 SNRCIQEVVL QEDPLSRSAX GFASPC-PSL WEISQQHSSP R-WRENSPEP ENSTTRP00000003357/1-338 SNRCIQEVVL QEDPLSRSAL GFPSPC-PSL WEISQQHSSP R-WRENSPEP 301 350 BACU007948/1-241 LARPALGTF- --ASSNRCDG RGGCRTLAEI FGKRVAQSFG FLHSYILDH ENSP00000331470/1-339 SERLIQESSG --APPPEANS LQGALYL--- CSEEEAGSKG VLTGAV--- ENSBTAP00000008720/1-340 SERLIQGSPG AEALPPEAKS LQGALYL--- CSEEDARDKN ALTGTV--- bmy_19556T0/1-179 SERLILESPG --ALAPEAKS LQGALYL--- CSEEDARDKG VLTGSV--- ENSTTRP00000003357/1-338 SERLILESPG --ALAPEAKS LQGALYL--- CSEEDARDKG VLTGSV---