KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:07 2014 Check: 00 .. Name: ENSP00000267163/1-928 Len: 969 Check: 3504 Weight: 1.00 Name: ENSBTAP00000008728/1-928 Len: 969 Check: 3775 Weight: 1.00 Name: BACU012200/1-857 Len: 969 Check: 4808 Weight: 1.00 Name: bmy_09604T0/1-529 Len: 969 Check: 2964 Weight: 1.00 Name: ENSTTRP00000003992/1-922 Len: 969 Check: 1048 Weight: 1.00 // 1 50 ENSP00000267163/1-928 MPPKTPRKTA ATAAAAAAEP PAPPPPPPPE EDPEQDSGPE DLPLVRLEFE ENSBTAP00000008728/1-928 MPPKTPRRAA AAAAAAAAEP PPPPLPPPPE EDPEQDSGSE DLPLARLEFE BACU012200/1-857 ---------- ---------- ---------- ---------- ---------- bmy_09604T0/1-529 MPPKTPRRAA A--AAAAAEP PPPPPPPPPE EDPEQDSGPE DLPLARLEFE ENSTTRP00000003992/1-922 MPPKTPRRAA A--AAAAAEP PPPPPPPPPE EDPEQDSGPE DLPLARLEFE 51 100 ENSP00000267163/1-928 ETEEPDFTAL CQKLKIPDHV RERAWLTWEK VSSVDGVLGG YIQKKKELWG ENSBTAP00000008728/1-928 ETEEPDFTAL CQKLKLPDHV RERAWLTWEK VSSVDGVLEG YVQKKKELWG BACU012200/1-857 ---------- ---------- ---------- ---------- ---------- bmy_09604T0/1-529 ETEEPDFTAL CQKLKIPDHV RERAWLTWEK VSSVDGVLEG YIQKKKELWG ENSTTRP00000003992/1-922 ETEEPDFTAL CQKLRIPDHV RERAWLTWEK VSSVDGVLEG YVQKKKELWG 101 150 ENSP00000267163/1-928 ICIFIAAVDL DEMSFTFTEL QKNIEISVHK FFNLLKEIDT STKVDNAMSR ENSBTAP00000008728/1-928 ICIFIAAVDL DEMPFTFTEL QKNIETSVYK FFDLLKEIDT STKVDNAMSR BACU012200/1-857 ---------- --MPFTFTEL QKNIETSVYK FFDLLKEIDT STKVDNVMSR bmy_09604T0/1-529 ICIFIAAVDL DEMPFTFTEL QKNIETSVYK FFDLLKEIDT STKVDNVMSR ENSTTRP00000003992/1-922 ICIFIAAVDL DEMPFTFTEL QKNIETSVYK FFDLLKEIDT SIKVDNVMSR 151 200 ENSP00000267163/1-928 LLKKYDVLFA LFSKLERTCE LIYLTQPSSS ISTEINSALV LKVSWITFLL ENSBTAP00000008728/1-928 LLKKYNVLCA LYSKLERTCE LIYLTQPSSS ISTEINSMLV LKVSWITFLL BACU012200/1-857 LLKKYNVLCA LYSKLERTCE LIYLSQPSSS ISTEINSMLA LKVSWLTFLL bmy_09604T0/1-529 LLKKYNVLCA LYSKLERTCE LIYLSQPSSS ISTEINSMLV LKVSWLTFLL ENSTTRP00000003992/1-922 LLKKYNVLCA LYSKLERTCE LIYLSQPSSS ISTEINSMLV LKVSWLTFLL 201 250 ENSP00000267163/1-928 AKGEVLQMED DLVISFQLML CVLDYFIKLS PPMLLKEPYK TAVIPINGSP ENSBTAP00000008728/1-928 AKGQVLQMED DLVISFQLML CVLDYFIKLS PPALLKDPYK TAVIPINGSP BACU012200/1-857 AKGQVLQMED DLVISFQLML CVLDYFIKLS PPALLKEPYK TAVIPINGSP bmy_09604T0/1-529 AK-------- ---------- ---------- ---------E TAVIPINGSP ENSTTRP00000003992/1-922 AKGQVLQMED DLVISFQLML CVLDYFIKLS PPALLKEPYK TAVIPINGSP 251 300 ENSP00000267163/1-928 RTPRRGQNRS ARIAKQLEND TRIIEVLCKE HECNIDEVKN VYFKNFIPFM ENSBTAP00000008728/1-928 RTPRRGQNRS ARIAKQLEND TRIIEVLCKE HECNIDEVKN VYFKNFIPFM BACU012200/1-857 RTPRRGQNRS ARIAKQLEND TRIIEVLCKE HECNIDEVKN VYFKNFIPFM bmy_09604T0/1-529 RTPRRGQNRS ARIAKQLEND TRIIEVLCKE HECNIDEVKN VYVKNFIPFV ENSTTRP00000003992/1-922 RTPRRGQNRS ARIAKQLEND TRIIEVLCKE HECNIDEVKN VYFKNFIPFM 301 350 ENSP00000267163/1-928 NSLGLVTSNG LPEVENLSKR YEEIYLKNKD LDARLFLDHD KTLQTDSIDS ENSBTAP00000008728/1-928 NSLGIVASNG LPEVENLSKQ YEEIYLKNKD LDARLFLDHD KTLQADPTDS BACU012200/1-857 NSLGIVASNG LPEVESLSKQ YEEIYLKNKD IDARLFLDHD KTLQADPTDS bmy_09604T0/1-529 NSLGIVASNG LPEVESLSKQ YEEIYLKNKD IDARLFLDHD KTLQADPTDS ENSTTRP00000003992/1-922 NSLGIVASNG LPEVESLSKQ YEEIYLKNKD IDARLFLDHD KTLQADPTDS 351 400 ENSP00000267163/1-928 FETQRTPRKS NLDEEVNVIP PHTPVRTVMN TIQQLMMILN SASDQPSENL ENSBTAP00000008728/1-928 FEMQRTPRKS NPDEEVNMIL PQTPVRTVMN TIQQLMMILN SASDQPSENL BACU012200/1-857 FEMQRTPRKS NPDEEVNVIL PQTPVRTVMN TIQQLMMILN SASDQPSENL bmy_09604T0/1-529 FEIQRTPRKS NPDEEVNVIL PQTPVRTVMN TIQQLMMILN SASDQPSENL ENSTTRP00000003992/1-922 FEMQRTPRKS NPDEEVNVIL PQTPVRTVMN TIQQLMMILN SASDQPSENL 401 450 ENSP00000267163/1-928 ISYFNNCTVN PKESILKRVK DIGYIFKEKF AKAVGQGCVE IGSQRYKLGV ENSBTAP00000008728/1-928 ISYFNNCTVN PKDSILKRVK DIGDVFKEKF AKAVGQGCME IGSQRYKLGV BACU012200/1-857 ISYFNNCTVN PKESILKRVK DIGYIFKEKF AKAVGQGCME IGSQRYKLGV bmy_09604T0/1-529 ISYFNNCTVN PKESILKRVK DIGYIFKEKF AKAVGQGCME IGSQRYKLGV ENSTTRP00000003992/1-922 ISYFNNCTVN PKESILKRVK DIGYIFKEKF AKAVGQGCME IGSQRYKLGV 451 500 ENSP00000267163/1-928 RLYYRVMESM LKSEEERLSI QNFSKLLNDN IFHMSLLACA LEVVMATYSR ENSBTAP00000008728/1-928 RLYYRVMESM LKSEEERLSI QNFSKLLNDN IFHMSLLACA LEVVMATYSR BACU012200/1-857 RLYYRVMESM LKSEEERLSI QNFSKLLNDN IFHMSLLACA LEVVMATYSR bmy_09604T0/1-529 RLYYRVMESM LKSEEERLSI QNFSKLLNDN IFHMSLLACA LEVVMATYSR ENSTTRP00000003992/1-922 RLYYRVMESM L--EEERLSI QNFSKLLNDN IFHMSLLACA LEVVMATYSR 501 550 ENSP00000267163/1-928 STSQNLDSGT DLSFPWILNV LNLKAFDFYK VIESFIKAEG NLTREMIKHL ENSBTAP00000008728/1-928 SMSQSLDTGT DLSFPWILNV FNLKAFDFYK VIESFIKAEA NLTREMIKHL BACU012200/1-857 STSQNLDTGT DLSFPWILNV LNLKAFDFYK VIESFIKAEA NLTREMIKHL bmy_09604T0/1-529 STSQNLDTGT DLSFPWILNV LNLKAFDFYK VIESFIKAEA NLTREMIKHL ENSTTRP00000003992/1-922 STSQNLDTGT DLSFPWILNV LNLKAFDFYK VIESFIKA-A NLTREM-KHL 551 600 ENSP00000267163/1-928 ERCEHRIMES LAWLSDSPLF DLIKQSKDRE GPTDHLESAC PLNLPLQNNH ENSBTAP00000008728/1-928 ERCEHRIMES LAWLSDSPLF DLIKQAKDRE GPVDHFEPAC TLNLPLQNNH BACU012200/1-857 ERCEHRIMES LAWLSDSPLF DLIKQAKDRE GPADHLEPAC SLSLPLQNNH bmy_09604T0/1-529 ERCEHRIMES LAWLSVSN-- ---------- ---------- ---------- ENSTTRP00000003992/1-922 ERCEHRIMES LAWLSXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 601 650 ENSP00000267163/1-928 TAADMYLSPV RSPKKKGSTT RVNSTANAET QATSAFQTQK PLKSTSLSLF ENSBTAP00000008728/1-928 TAADMYLSPV RSPKKKGPTP RVNSTPNSEA QATSAFQTQK PLKSTSLSLF BACU012200/1-857 TAADMYLSPV RSPKKKGSTT RVNSTANSEA QATSAFQTQK PLKSTSLSLF bmy_09604T0/1-529 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003992/1-922 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 651 700 ENSP00000267163/1-928 YKKVYRLAYL RLNTLCERLL SEHPELEHII WTLFQHTLQN EYELMRDRHL ENSBTAP00000008728/1-928 YKKVYRLAYL RLNTLCARLL SDHPELEHII WTLFQHTLQN EYELMRDRHL BACU012200/1-857 YKKVCRLAYL RLNTLCARLL SDHPELEHII WTLFQHTLQN EYELMRDRHL bmy_09604T0/1-529 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003992/1-922 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 701 750 ENSP00000267163/1-928 DQIMMCSMYG ICKVKNIDLK FKIIVTAYKD LPHAVQETFK RVLIKEEEYD ENSBTAP00000008728/1-928 DQIMMCSMYG ICKVKNIDLK FKIIVTAYKD LPHAVQETFK RVLIREEEYD BACU012200/1-857 DQIMMCSMYG ICKVKNIDLK FKIIVTAYKD LPHAVQETFK RVLIREEEYD bmy_09604T0/1-529 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003992/1-922 XXIMMCSMYG ICKVKNIDLK FKIIVTAYKD LPHAVQETFK RVLIREEEYD 751 800 ENSP00000267163/1-928 SIIVFYNSVF MQRLKTNILQ YASTRPPTLS PIPHIPRSPY KFPSSPLRIP ENSBTAP00000008728/1-928 SIIVFYNSVF MQRLKTNILQ YASTRPPTLS PIPHIPRSPY KFSSSPLRIP BACU012200/1-857 SIIVFYNSVF MQRLKTNILQ YASTRPPTLS PIPHIPRSPY KFSSSPLRVP bmy_09604T0/1-529 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003992/1-922 SIIVFYNSVF MQRLKTNILQ YASTRPPTLS PIPHIPRSPY KFSSSPLRVP 801 850 ENSP00000267163/1-928 GGNIYISPLK SPYKISEGLP TPTKMTPRSR ILVSIGESFG TSEKFQKINQ ENSBTAP00000008728/1-928 GGNIYISPLN NPYKISEGLP TPTKMTPRSR ILVSIGESFG TSEKFQKINQ BACU012200/1-857 GGNIYISPLK NPYKISEGLP MPTKMTPRSR ILVSIGESFG TSEKFQEINQ bmy_09604T0/1-529 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003992/1-922 GGNIYISPLK NPYKISEGLP MPTKMTPRSR ILVSIGESFG TSEKFQKINQ 851 900 ENSP00000267163/1-928 MVCNSDRVLK RSAEGSNPPK PLKKLRFDIE GSDEADGSKH LPGESKFQQK ENSBTAP00000008728/1-928 MVCNSDRVLK RSAEGSNPPK PLKKLRFDIE GSDEADGSKH LPGESKFQQK BACU012200/1-857 MVCNSDRVLK RSAEGSNPPK PLKKLRFDIE GSDEADGSKH LPGESKFQQK bmy_09604T0/1-529 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003992/1-922 MVCNSDRVLK RSAEGSNPPK PLKKLRFDIE GSDEADGSKH LPGESKFQQK 901 950 ENSP00000267163/1-928 LAEMTSTRTR MQKQK----- -----MNDSM DTSNKEEK-- ---------- ENSBTAP00000008728/1-928 LAEMTSTRTR MQKQK----- -----MNESV DTSNREEK-- ---------- BACU012200/1-857 LAEMRLSSEA FLDTQAKILP LYCATLLQKC NSIHHRQKLP YSGCLLPWFL bmy_09604T0/1-529 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003992/1-922 LAEMTSTRTR MQKQK----- -----MNDST DTSNREEK-- ---------- 951 1000 ENSP00000267163/1-928 ---------- --------- ENSBTAP00000008728/1-928 ---------- --------- BACU012200/1-857 FTHPGINLAG LTYYYSSSI bmy_09604T0/1-529 ---------- --------- ENSTTRP00000003992/1-922 ---------- ---------