KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:36:08 2014 Check: 00 .. Name: ENSP00000345144/1-551 Len: 600 Check: 1641 Weight: 1.00 Name: ENSBTAP00000008733/1-527 Len: 600 Check: 8356 Weight: 1.00 Name: BACU012201/1-577 Len: 600 Check: 5559 Weight: 1.00 Name: bmy_09608T0/1-600 Len: 600 Check: 1030 Weight: 1.00 Name: ENSTTRP00000004013/1-550 Len: 600 Check: 3881 Weight: 1.00 // 1 50 ENSP00000345144/1-551 ---------- MEEELPLFSG DSG------- ---------- KPVQATLSSL ENSBTAP00000008733/1-527 ---------- ---------- ---------- ---------- ---------- BACU012201/1-577 ------MEDH MEEELFLLYG KSG------- ---------- KPVQATVSSL bmy_09608T0/1-600 MRLHRTMEDH MEEELFLLYG KSGKMPVXDE RGGLDVSKVA KPVQATLSSL ENSTTRP00000004013/1-550 ---------- MEEEL-LLYG KSV------- ---------- KPVQATLSSL 51 100 ENSP00000345144/1-551 KMLDVGKWPI FSLCSEEELQ LIRQACVFGS AGNEVLYTTV NDEIFVLGTN ENSBTAP00000008733/1-527 -MLDVGKWPI FSLCSEAELQ LVRQACVFGS ASNELLYTTV NDEIFVLGTN BACU012201/1-577 KMLDVGKWPI FSLCSEEELQ LVRQACVFGS AGNEVLYTTV NDEIFVLGTN bmy_09608T0/1-600 KMLDVGKWPI FSLCSEEELQ LVRQACVFGS AGNEVLYTTV NDEIFVLGTN ENSTTRP00000004013/1-550 KMLDVGKWPI FSLCSEEELQ LVRQACVFGS AGNEVLYTTV NDEIFVLGTN 101 150 ENSP00000345144/1-551 CCGCLGLGDV QSTIEPRRLD SLNGKKIACL SYGSGPHIVL ATTEGEVFTW ENSBTAP00000008733/1-527 CCGCLGLGDV QSTIEPRRLD SLSGKKIACL SYGSGPHIVL ATTEGEVFTW BACU012201/1-577 CCGCLGLGDV QSTIEPRRLE SLSGKKIACL SYGSGPHVVL ATAEGEVFTW bmy_09608T0/1-600 CCGCLGLGDV QSTIEPRRLD SLSGKKIACL SYGSGPHVVL ATAEGEVFTW ENSTTRP00000004013/1-550 CCGCLGLGDV QSTIEPRRLD SLSGKKIACL SYGSGPHVVL ATAEGEVFTW 151 200 ENSP00000345144/1-551 GHNAYSQLGN GTTNHGLVPC HISTNLSNKQ VIEVACGSYH SLVLTSDGEV ENSBTAP00000008733/1-527 GHNAYSQLGN GTTNAGLVPY HISTNLSNKQ VIEVACGSYH SLVLTSDGEV BACU012201/1-577 GHNGYSQLGN GTTNHGLVPC HISTNLSNKQ VIEVACGSYH SLVLTSDGEV bmy_09608T0/1-600 GHNGYSQLGN GTTNHGLVPC HISTNLSNKQ VIEVACGSYH SLVLTSDGEV ENSTTRP00000004013/1-550 GHNGYSQLGN GTTNHGLVPC HISTNLSNKQ VIEVACGSYH SLVLTSDGEV 201 250 ENSP00000345144/1-551 FAWGYNNSGQ VGSGSTVNQP IPRRVTGCLQ NKVVVTIACG QMCCMAVVDT ENSBTAP00000008733/1-527 FAWGYNNSGQ VGSGSTANQP IPRRVTGCLQ SKVVVNIACG QMCSMAVVNT BACU012201/1-577 FAWGYNNSGQ VGSASTANQP IPRRVTGCLQ NKVVVNIACG QMCSMAVVNT bmy_09608T0/1-600 FAWGYNNSGQ VGSASTANQP IPRRVTGCLQ NKVVVNIACG QMCSMAVVNT ENSTTRP00000004013/1-550 FAWGYNNSGQ VGSGSTANQP IPRRVTGCLQ NKVVVNIACG QMCSMAVVNT 251 300 ENSP00000345144/1-551 GEVYVWGYNG NGQLGLGNSG NQPTPCRVAA LQGIRVQRVA CGYAHTLVLT ENSBTAP00000008733/1-527 GEVFVWGYNG NGQLGLGSSG NQPTPCRVAA LQGIRVQRVA CGYAHTLVLT BACU012201/1-577 GEVYVWGYNG NGQLGLGSSG NQPTPCRVAA LQGIRVQRVA CGYAHTLVLT bmy_09608T0/1-600 GEVYVWGYNG NGQLGLGSSG NQPTPCRVAA LQGIRVQRVA CGYAHTLVLT ENSTTRP00000004013/1-550 GEVYVWGYNG NGQLGLGSSG NQPTPCRVAA LQGIRVQRVA CGYAHTLVLT 301 350 ENSP00000345144/1-551 DEGQVYAWGA NSYGQLGTGN KSNQSYPTPV TVEKDR---- ---------- ENSBTAP00000008733/1-527 DEGQVYAWGA NSYGQLGTGN KSNQSYPTPV VVEKDR---- ---------- BACU012201/1-577 DEGQVYAWGA NSYGQLGTGN KSNQSYPTPV VVEKDRARCR LPTSDAPHLA bmy_09608T0/1-600 DEGQVYAWGA NSYGQLGTGN KSNQSYPTPV VVEKDRVRCH LPTSDAPRLA ENSTTRP00000004013/1-550 DEGQVYAWGA NSYGQLGTGN KSNQSYPTPV VVEKDR---- ---------- 351 400 ENSP00000345144/1-551 --------II EIAACHSTHT SAAKTQGGHV YMWGQCRGQS VILPHLTHFS ENSBTAP00000008733/1-527 --------II EIAACHSAHT SAAKTQGGHV YMWGQCRGQS VTLPHLTHFS BACU012201/1-577 PLVLTVREIT EIAACHSAHT SAAKTQGGHV YMWGQCRGQS VTLPHLTHFF bmy_09608T0/1-600 PLVLTVREIT EIAACHSAHT SAAKTQGGHV YMWGQCRGQS VTLPHLTHFS ENSTTRP00000004013/1-550 --------IT EIAACHSTHT SAAKTQGGHV YMWGQCRGQS VTLPHLTHFS 401 450 ENSP00000345144/1-551 CTDDVFACFA TPAVTWRLLS VEPDDHLTVA ESLKREFDNP DTADLKFLVD ENSBTAP00000008733/1-527 STDDVFACFA TPAVTWRLLS VEPDDHLTVA ESLKREFDNP NTADLKFLVD BACU012201/1-577 STDDVFACFA TPAVTWRLLS VEPDGHLTVA ESLKREFDNP STADLRFLVD bmy_09608T0/1-600 STDDVFACFA TPAVTWRLLS VEPDGHLTVA ESLKREFDNP STADLRFLVD ENSTTRP00000004013/1-550 STDDVFACFA TPAVTWRLLS VEPDGHLTVA ESLKREFDNP STADLRFLVD 451 500 ENSP00000345144/1-551 GKYIYAHKVL LKIRCEHFRS SLEDNEDDIV EMSEFSYPVY RAFLEYLYTD ENSBTAP00000008733/1-527 GKYIYVHKVL LKIRCEHFRS SLEDNEDDIV EMSEFSYPVY RAFLEYLYTD BACU012201/1-577 GKYIYAHKVL LKIRCEHFRS SLEDSEDDIV EMSEFSYPVY RAFLEYLYTD bmy_09608T0/1-600 GKYIYAHKVL LKIRCEHFRS SLEDSEDDIV EMSEFSYPVY RAFLEYLYTD ENSTTRP00000004013/1-550 GKYIYAHKVL LKIRCEHFRS SLEDSEDDIV EMSEFSYPVY RAFLEYLYTD 501 550 ENSP00000345144/1-551 SISLSPEEAV GLLDLATFYR ENRLKKLCQQ TIKQGICEEN AIALLSAAVK ENSBTAP00000008733/1-527 SISLSPEEAV GLLDLATFYR ENRLKKLCQQ TIKQGICEEN AIALLSAAVK BACU012201/1-577 SISLSPEEAV GLLDLATFYR ENRLKKLCQQ TIKQGICEEN AIALLSAAVK bmy_09608T0/1-600 SISLSPEEAV GLLDLATFYR ENRLKKLCQQ TIKQGICEEN AIALLSAAVK ENSTTRP00000004013/1-550 SISLSPEEAV GLLDLATFYR ENRLKKLCQQ TIKQGICEEN AIALLSAAVK 551 600 ENSP00000345144/1-551 YDAQDLEEFC FRFCINHLTV VTQTSGFAEM DHDLLKNFIS KASRVGAFKN ENSBTAP00000008733/1-527 YEAQDLEEFC FRFCINHLTV VTQTSGFAEM DHDLLKNFIS KASRVGAFKN BACU012201/1-577 YDAQDLEEFC FRFCINHLTV VTQTSGFAEM DHDLLKNFIS KASRVGAFKN bmy_09608T0/1-600 YDAQDLEEFC FRFCINHLTV VTQTSGFAEM DHDLLKNFIS KASRVGAFKN ENSTTRP00000004013/1-550 YDAQDLEEFC FRFCINHLTV VTQTSGFAEM DHDLLKNFIS KASRVGAFKN